Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002101

Physical Location & Seq

Genomic Coordinates Reverse (-)

48386780 .. 48388139

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0369500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGATGGCGGTCAATGTTCAAAAGACAAACAGCAAGATGAGCAGTCCTTTGTTCTATGAATTGAAGAAGCAAGCCTCTTCCTTCTTAAAAGAGAAGATCAGAACTGCGCGTCTGGCGCTGACTGATGTAACACCTGCAGAGCTAATGACAGAAGAAGCTACAAATGAAAATTCATGGCCACCAGACACACGTACCATTGGGGTAATATCCAGGGCTGCCTTTGACGTTGATGATTACTGGAGGATTGTGGAGATTCTGCATAGGAGGTTGTCGAACTTTGATAGAAAGAATTGGCGAGGCTCTTACAAGGCTCTAATTCTATTGGAATACCTTCTAAGCCATGGACCATTGAGACTTGCTGAGGAGTTTGAGGTTGATATCGATGTTATCAAGCAGATGGGAAGGTTTCAGCACATTGATGAAAAAGGATTTAACTGGGGCATGAGTGTGAGGAAGTTATCTGATAGAGTGCTCAAGCTTCTTGGAGACACTGTGTTTCTTAAAGAAGAGAGAGCCAGAGCTCGCAATATAACTCGTGGAATACAAGGGTTCGGGAGCTTCAGTCAGCAGCATTCTCTCACAGATTCAAGCTTCAAGGAGCTATCTCGTAAAACGTATGAGAGGTGTAATTCACACTACACTGATAATCAGAGTCAGGAAGATAAGTCATTTGACTTGAAGGAGAATTTCTTGGTGAAGAAACAACCGGAAATTGGTGATCAAGACATTATCTCATCGAAACCTGAAATGAATCTCTACATAGGGGATCACCCATTTTGCAAGAATGAGCATCAGAAGGAAGAATCCCTTCTTTCTTCCGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

275

Amino Acids

31.95

Weight (kDa)

6.68

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENTH	PF01417	44 - 164	7.5e-31	ENTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40540 AT2G40540 AT2G40540 AT2G40540 AT2G40540
fragaria_vesca	FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830
malus_domestica	MD01G1165900.v1.1 MD07G1232700.v1.1
prunus_persica	Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1
pyrus_communis	pycom01g17950 pycom07g21040
rosa_chinensis	RchiOBHm_Chr1g0372091
rosa_laevigata	RLG00000026924
rosa_multiflora	Rmu_sc0001755.1_g000029
rosa_roxburghii	Rroxscaffold_4G00285270
rosa_rugosa	Rorug01G0369200 Rorug01G0369300 Rorug01G0369400 Rorug01G0369500 Rorug01G0369600 Rorug01G0369600
rosa_samantha	Rh1AG377900 Rh1BG341300 Rh1CG354600 Rh1DG372400
rosa_wichuraiana	Rw1G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	142
AccII	CGCG	1 cut(s)	109
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	774
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	169, 685
AcuI	CTGAAG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	20, 64, 588, 595, 679
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	7 cut(s)	142, 158, 478, 521, 558, 591, 601
AluI	AGCT	7 cut(s)	142, 158, 478, 521, 558, 591, 601
Alw21I	GWGCWC	2 cut(s)	474, 523
Alw26I	GTCTC	2 cut(s)	346, 480
AlwI	GGATC	1 cut(s)	774
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	215, 568
ApoI	RAATTY	2 cut(s)	169, 685
Asp700I	GAANNNNTTC	2 cut(s)	330, 807
AspLEI	GCGC	2 cut(s)	109, 118
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	3 cut(s)	706, 728, 761
AvaII	GGWCC	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BalI	TGGCCA	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	523
BauI	CACGAG	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	474, 523
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	202, 580
BccI	CCATC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	211
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	346, 480
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	216, 569
BlsI	GCNGC	2 cut(s)	217, 570
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	259
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	210, 340
BsaWI	WCCGGW	1 cut(s)	706
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 507, 547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse1I	ACTGG	2 cut(s)	242, 440
BseBI	CCWGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	210, 340
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	242, 440
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	202, 580
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	474, 523
BsiSI	CCGG	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	2 cut(s)	346, 480
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	474, 523
Bsp143I	GATC	3 cut(s)	96, 718, 766
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	242, 440
BssECI	CCNNGG	2 cut(s)	210, 340
BssMI	GATC	3 cut(s)	96, 718, 766
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	2 cut(s)	82, 501
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	72, 523
BstDEI	CTNAG	2 cut(s)	335, 360
BstDSI	CCRYGG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	109, 118
BstKTI	GATC	3 cut(s)	99, 721, 769
BstMAI	GTCTC	2 cut(s)	346, 480
BstMBI	GATC	3 cut(s)	96, 718, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 113, 115
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	202, 580
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	489, 639
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	72, 523
CfoI	GCGC	2 cut(s)	109, 118
Cfr13I	GGNCC	1 cut(s)	344
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	3 cut(s)	174, 341, 442
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	335, 360
DpnI	GATC	3 cut(s)	98, 720, 768
DpnII	GATC	3 cut(s)	96, 718, 766
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	82, 501
EarI	CTCTTC	2 cut(s)	82, 501
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	523
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	3 cut(s)	177, 344, 445
FaiI	YATR	8 cut(s)	57, 175, 261, 342, 443, 530, 618, 761
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FatI	CATG	3 cut(s)	173, 340, 441
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	2 cut(s)	216, 569
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	216, 569
GlaI	GCGC	2 cut(s)	108, 117
GluI	GCNGC	2 cut(s)	216, 569
GsuI	CTGGAG	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	707
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	2 cut(s)	109, 118
Hin1II	CATG	3 cut(s)	177, 344, 445
Hin6I	GCGC	2 cut(s)	107, 116
HinP1I	GCGC	2 cut(s)	107, 116
HindIII	AAGCTT	2 cut(s)	476, 589
HinfI	GANTC	5 cut(s)	253, 584, 652, 751, 803
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	3 cut(s)	706, 728, 761
Hpy188I	TCNGA	4 cut(s)	101, 463, 651, 795
Hpy188III	TCNNGA	3 cut(s)	553, 656, 722
HpyAV	CCTTC	6 cut(s)	91, 341, 396, 673, 790, 818
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	3 cut(s)	190, 225, 614
HpyCH4V	TGCA	3 cut(s)	137, 259, 780
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 113, 115
HpyF3I	CTNAG	2 cut(s)	335, 360
HpySE526I	ACGT	3 cut(s)	190, 225, 614
Hsp92II	CATG	3 cut(s)	177, 344, 445
HspAI	GCGC	2 cut(s)	107, 116
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	3 cut(s)	96, 718, 766
LmnI	GCTCC	2 cut(s)	555, 598
Lsp1109I	GCAGC	2 cut(s)	202, 580
LweI	GCATC	1 cut(s)	799
MaeII	ACGT	3 cut(s)	190, 225, 614
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	98, 720, 768
MboI	GATC	3 cut(s)	96, 718, 766
MboII	GAAGA	9 cut(s)	69, 76, 106, 164, 518, 671, 709, 807, 812
MhlI	GDGCHC	2 cut(s)	474, 523
MlsI	TGGCCA	1 cut(s)	178
MluCI	AATT	7 cut(s)	59, 169, 289, 315, 628, 685, 711
MluNI	TGGCCA	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	8 cut(s)	85, 234, 258, 290, 355, 364, 444, 615
Mox20I	TGGCCA	1 cut(s)	178
MroXI	GAANNNNTTC	2 cut(s)	330, 807
MscI	TGGCCA	1 cut(s)	178
MseI	TTAA	3 cut(s)	86, 432, 501
MslI	CAYNNNNRTG	2 cut(s)	417, 446
Msp20I	TGGCCA	1 cut(s)	178
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	39, 113, 115
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	3 cut(s)	96, 718, 766
NlaIII	CATG	3 cut(s)	177, 344, 445
PaqCI	CACCTGC	1 cut(s)	142
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	2 cut(s)	330, 807
PfeI	GAWTC	4 cut(s)	253, 584, 751, 803
PkrI	GCNGC	2 cut(s)	217, 570
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Ppu21I	YACGTR	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	2 cut(s)	417, 446
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	86, 432, 501
SatI	GCNGC	2 cut(s)	216, 569
Sau3AI	GATC	3 cut(s)	96, 718, 766
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	474, 523
SfaNI	GCATC	1 cut(s)	799
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	2 cut(s)	417, 446
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	7 cut(s)	59, 169, 289, 315, 628, 685, 711
SsiI	CCGC	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	3 cut(s)	193, 228, 617
TaqI	TCGA	3 cut(s)	272, 381, 737
TasI	AATT	7 cut(s)	59, 169, 289, 315, 628, 685, 711
TfiI	GAWTC	4 cut(s)	253, 584, 751, 803
Tru1I	TTAA	3 cut(s)	86, 432, 501
Tru9I	TTAA	3 cut(s)	86, 432, 501
TscAI	CASTG	2 cut(s)	496, 646
TseI	GCWGC	2 cut(s)	215, 568
TspDTI	ATGAA	5 cut(s)	72, 162, 180, 435, 764
TspGWI	ACGGA	1 cut(s)	808
TspRI	CASTG	2 cut(s)	496, 646
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	169, 685
XmnI	GAANNNNTTC	2 cut(s)	330, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.