Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002101

Physical Location & Seq

Genomic Coordinates Forward (+)

48383815 .. 48386550

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAGAAAGTGAGGACATTCAGCCGCTCGTGTGTGATAATGGAACGGGAATGGTCAAGGCCGGGTTTGCTGGAGATGATGCTCCGCGAGCTGTCTTCCCTAGCATTGTAGGGCGTCCTCGTCACACTGGTGTCATGGTTGGCATGGGGCAGAAAGATGCTTATGTGGGTGACGAGGCTCAATCCAAGCGTGGTATCTTGACTTTGAAATATCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTTCTAACTGAGGCCCCACTGAATCCCAAGGCTAATCGTGAGAAGATGACCCAGATAATGTTCGAGACCTTTAACACTCCTGCTATGTATGTGGCCATTCAAGCTGTTCTTTCCCTGTATGCAAGTGGGCGTACAACTGGTATTGTGCTTGACTCTGGTGATGGTGTCAGCCATACAGTCCCCATATATGAGGGATATGCCCTCCCTCATGCCATCCTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATAGCTTGATGAAAATTCTTACTGAGCGTGGATATTCTTTCACTACCACTGCTGAGCGTGAAATTGTCAGGGACATGAAGGAAAAACTTGCTTACATTGCCCTTGACTATGAGCAGGAGCTTGAGACTTCCAAAACCAGCTCCTCAGTTGAGAAGAGCTATGAGTTACCAGATGGGCAGGTCATTACCATTGGTGCAGAGCGTTTCAGATGCCCAGAAGTCCTTTTCCAACCCTCAATGATCGGAATGGAAGCAGCTGGCATTCACGAGACCACTTACAACTCGATCATGAAGTGTGACGTTGATATCAGGAAAGACCTTTACGGAAATATTGTACTTTCTGGTGGTTCAACTATGTTTCCAGGCATTGCTGATAGGATGAGCAAGGAAATTTCTGCTCTAGCCCCAAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCACTCAGTACCTTCCAGCAGATGTGGATTGCAAAAGCGGAGTATGATGAGTCTGGGCCGTCCATAGTTCATAGGAAATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

377

Amino Acids

41.72

Weight (kDa)

5.31

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 377	2.6e-146	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40540 AT2G40540 AT2G40540 AT2G40540 AT2G40540
fragaria_vesca	FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830 FvH4_7g25830
malus_domestica	MD01G1165900.v1.1 MD07G1232700.v1.1
prunus_persica	Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1 Prupe.2G263200_v2.0.a1
pyrus_communis	pycom01g17950 pycom07g21040
rosa_chinensis	RchiOBHm_Chr1g0372091
rosa_laevigata	RLG00000026924
rosa_multiflora	Rmu_sc0001755.1_g000029
rosa_roxburghii	Rroxscaffold_4G00285270
rosa_rugosa	Rorug01G0369200 Rorug01G0369300 Rorug01G0369400 Rorug01G0369500 Rorug01G0369600 Rorug01G0369600
rosa_samantha	Rh1AG377900 Rh1BG341300 Rh1CG354600 Rh1DG372400
rosa_wichuraiana	Rw1G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	997
AccBSI	CCGCTC	1 cut(s)	28
AccII	CGCG	1 cut(s)	88
AciI	CCGC	3 cut(s)	26, 86, 1085
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	2 cut(s)	579, 954
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	4 cut(s)	448, 900, 1016, 1057
AgsI	TTSAA	3 cut(s)	208, 416, 915
AjnI	CCWGG	1 cut(s)	925
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	8 cut(s)	92, 286, 419, 570, 685, 705, 723, 821
AluI	AGCT	8 cut(s)	92, 286, 419, 570, 685, 705, 723, 821
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	374, 683, 827
AlwNI	CAGNNNCTG	1 cut(s)	1023
AoxI	GGCC	4 cut(s)	60, 327, 408, 1103
ApeKI	GCWGC	2 cut(s)	818, 975
ApoI	RAATTY	2 cut(s)	579, 954
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspS9I	GGNCC	2 cut(s)	328, 1103
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	182, 485
BalI	TGGCCA	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	997
BauI	CACGAG	2 cut(s)	29, 830
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	830, 987
BccI	CCATC	4 cut(s)	470, 536, 731, 1046
BceAI	ACGGC	1 cut(s)	1090
BciT130I	CCWGG	1 cut(s)	927
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	374, 683, 827
BfaI	CTAG	2 cut(s)	102, 965
BfuAI	ACCTGC	1 cut(s)	733
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	3 cut(s)	26, 819, 976
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	3 cut(s)	27, 820, 977
Bme1390I	CCNGG	2 cut(s)	64, 927
BmgT120I	GGNCC	2 cut(s)	328, 1103
BmiI	GGNNCC	3 cut(s)	330, 999, 1036
BmrFI	CCNGG	2 cut(s)	64, 927
BmrI	ACTGGG	2 cut(s)	250, 305
BmsI	GCATC	4 cut(s)	70, 148, 274, 764
BmuI	ACTGGG	2 cut(s)	250, 305
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	115
BsaI	GGTCTC	2 cut(s)	374, 827
BsaJI	CCNNGG	1 cut(s)	342
Bse1I	ACTGG	4 cut(s)	133, 245, 311, 457
Bse3DI	GCAATG	2 cut(s)	660, 930
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	250, 528, 948
BseMI	GCAATG	2 cut(s)	660, 930
BseMII	CTCAG	6 cut(s)	315, 579, 609, 723, 996, 1066
BseNI	ACTGG	4 cut(s)	133, 245, 311, 457
BseRI	GAGGAG	1 cut(s)	697
BseXI	GCAGC	2 cut(s)	830, 987
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	62, 329, 410, 1105
BshNI	GGYRCC	1 cut(s)	997
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	479, 650
BsmAI	GTCTC	3 cut(s)	374, 683, 827
BsmFI	GGGAC	2 cut(s)	479, 650
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	4 cut(s)	62, 329, 410, 1105
Bso31I	GGTCTC	2 cut(s)	374, 827
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	258, 804, 849, 984
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	3 cut(s)	26, 86, 1085
BspANI	GGCC	4 cut(s)	62, 329, 410, 1105
BspCNI	CTCAG	6 cut(s)	316, 580, 610, 722, 997, 1065
BspFNI	CGCG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	3 cut(s)	330, 999, 1036
BspMI	ACCTGC	1 cut(s)	733
BspQI	GCTCTTC	2 cut(s)	297, 713
BspT107I	GGYRCC	1 cut(s)	997
BspTNI	GGTCTC	2 cut(s)	374, 827
BsrBI	CCGCTC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	660, 930
BsrI	ACTGG	4 cut(s)	133, 245, 311, 457
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	4 cut(s)	258, 804, 849, 984
BssNI	GRCGYC	1 cut(s)	115
BssSI	CACGAG	2 cut(s)	29, 830
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	2 cut(s)	29, 830
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	2 cut(s)	493, 1019
Bst6I	CTCTTC	2 cut(s)	297, 713
BstACI	GRCGYC	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	90, 823
BstDEI	CTNAG	6 cut(s)	324, 588, 618, 709, 1005, 1052
BstF5I	GGATG	3 cut(s)	250, 528, 948
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	4 cut(s)	261, 807, 852, 987
BstMAI	GTCTC	3 cut(s)	374, 683, 827
BstMBI	GATC	4 cut(s)	258, 804, 849, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	2 cut(s)	62, 925
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	830, 987
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	62, 329, 410, 1105
BtsCI	GGATG	3 cut(s)	250, 528, 948
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	5 cut(s)	126, 332, 561, 612, 1024
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	2 cut(s)	90, 823
CaiI	CAGNNNCTG	1 cut(s)	1023
CciI	TCATGA	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	328, 1103
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	4 cut(s)	447, 899, 1015, 1056
CviAII	CATG	8 cut(s)	136, 145, 224, 250, 524, 640, 853, 979
CviQI	GTAC	4 cut(s)	447, 899, 1015, 1056
DdeI	CTNAG	6 cut(s)	324, 588, 618, 709, 1005, 1052
DpnI	GATC	4 cut(s)	260, 806, 851, 986
DpnII	GATC	4 cut(s)	258, 804, 849, 984
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	2 cut(s)	297, 713
EarI	CTCTTC	2 cut(s)	297, 713
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	2 cut(s)	374, 827
Eco32I	GATATC	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	925
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 982
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	2 cut(s)	479, 650
FatI	CATG	8 cut(s)	135, 144, 223, 249, 523, 639, 852, 978
Fnu4HI	GCNGC	3 cut(s)	26, 819, 976
FokI	GGATG	3 cut(s)	257, 515, 955
Fsp4HI	GCNGC	3 cut(s)	26, 819, 976
FspBI	CTAG	2 cut(s)	102, 965
GluI	GCNGC	3 cut(s)	26, 819, 976
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	4 cut(s)	62, 329, 410, 1105
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 982
HinfI	GANTC	3 cut(s)	337, 467, 1097
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	182, 485
Hpy188I	TCNGA	2 cut(s)	773, 809
Hpy188III	TCNNGA	9 cut(s)	199, 353, 379, 539, 554, 830, 853, 874, 1024
HpyAV	CCTTC	4 cut(s)	283, 542, 637, 1069
HpyCH4III	ACNGT	2 cut(s)	493, 1019
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	3 cut(s)	437, 761, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
HpyF3I	CTNAG	6 cut(s)	324, 588, 618, 709, 1005, 1052
HpySE526I	ACGT	1 cut(s)	864
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 982
Kzo9I	GATC	4 cut(s)	258, 804, 849, 984
LguI	GCTCTTC	2 cut(s)	297, 713
LmnI	GCTCC	4 cut(s)	88, 682, 710, 1040
Lsp1109I	GCAGC	2 cut(s)	830, 987
LweI	GCATC	4 cut(s)	70, 148, 274, 764
MaeI	CTAG	2 cut(s)	102, 965
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	5 cut(s)	122, 170, 554, 729, 860
MalI	GATC	4 cut(s)	260, 806, 851, 986
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	4 cut(s)	258, 804, 849, 984
MboII	GAAGA	7 cut(s)	88, 268, 308, 314, 370, 730, 994
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	4 cut(s)	216, 579, 627, 954
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	2 cut(s)	461, 1106
MmeI	TCCRAC	1 cut(s)	817
Mox20I	TGGCCA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	1127
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	64, 927
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	927
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	4 cut(s)	258, 804, 849, 984
NlaIII	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 982
NlaIV	GGNNCC	3 cut(s)	330, 999, 1036
NmuCI	GTSAC	4 cut(s)	122, 170, 554, 860
OliI	CACNNNNGTG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	852
PciSI	GCTCTTC	2 cut(s)	297, 713
PctI	GAATGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	27, 820, 977
PleI	GAGTC	2 cut(s)	461, 1105
PpsI	GAGTC	2 cut(s)	461, 1105
Psp6I	CCWGG	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	3 cut(s)	330, 999, 1036
PspPI	GGNCC	2 cut(s)	328, 1103
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	4 cut(s)	448, 900, 1016, 1057
RsaNI	GTAC	4 cut(s)	447, 899, 1015, 1056
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	2 cut(s)	297, 713
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	26, 819, 976
Sau3AI	GATC	4 cut(s)	258, 804, 849, 984
Sau96I	GGNCC	2 cut(s)	328, 1103
SchI	GAGTC	2 cut(s)	461, 1106
ScrFI	CCNGG	2 cut(s)	64, 927
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	4 cut(s)	70, 148, 274, 764
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	4 cut(s)	216, 579, 627, 954
SsiI	CCGC	3 cut(s)	26, 86, 1085
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	2 cut(s)	102, 965
StyD4I	CCNGG	2 cut(s)	62, 925
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	493, 1019
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	2 cut(s)	378, 848
TasI	AATT	4 cut(s)	216, 579, 627, 954
TatI	WGTACW	2 cut(s)	898, 1014
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	5 cut(s)	133, 339, 568, 619, 1024
TseFI	GTSAC	4 cut(s)	122, 170, 554, 860
TseI	GCWGC	2 cut(s)	818, 975
Tsp45I	GTSAC	4 cut(s)	122, 170, 554, 860
TspDTI	ATGAA	5 cut(s)	590, 656, 869, 995, 1106
TspGWI	ACGGA	1 cut(s)	903
TspRI	CASTG	5 cut(s)	133, 339, 568, 619, 1024
XapI	RAATTY	2 cut(s)	579, 954
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	2 cut(s)	102, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.