Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009969

Physical Location & Seq

Genomic Coordinates Reverse (-)

54035417 .. 54037595

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0443800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCCCTTATATCTCATAGTAATTATGACCCCGGACCCCCTATTCTTCACTTCCCACTAAAATTTAAAGTAGGGTTCGTGTCCATTTTTTCAGATTCAAAGTCCAACATTTACGGAGCCTATTCAGAGCGGTACACCAGCACTATAAAAGGAGTTCTTCCCACTTATGCATCTTCACAACCCAAAATACAAGTTCCAGCCTATAGGTCAAGTACAGAGCTTCTGCCATTACCAGAAACCCTAGCTTTCTCTTCTGTGATTGCATCATTGGATCAGCTAGCTGCGGTTATGGCTTCTAACTTCTGCTTCACGACCCTTGCAATCCTCGCTCTTGCCCTTGCTGTTTGCGTGCAAGGCACTCTAGGGGGAGTGACATGTGAGAATCTAGACGAAAGCACTTGTGCGTTCGCAGTGTCATCATCGGCCAAACGCTGTGTGCTTGAGAAGCACGTAAAGAGGAGCGGAGAGGAAGCATACACATGCCGCACATCAGAGATTGAAGCAGATAAACTGAAGGACTGGATCGAGAGCGAGCAGTGCATTAAATCTTGCGGCCTGGACCGCAAGTCTTATGGAATCTCATCCGACTCTCTCCTCGAGTCTCGCTTTGCACAGAAGCTTTGCTCTCCTCAGTGCTACGGCAGCTGCCCCAACATTGTTGACCTTTACTTCAACCTCGCAGCTGGTGAAGGGGTGTTCCTTCCAAAATTATGTGAAGCACAAGGAGCAAATGCTCGTAGGGATTTGTCCGAGCTGCGAAGCTCTGGATATGTTGCGCCAGGACCAGTAAAATCGGTTAACTTGGTAGCAGAGGCACCAGTAAACTACATGAACTTGGAAGCTGAACACTACGTTGCTCCAGCACAGACACCATGTGCCGATGCTCCAGCACTGACACCAGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0016137 GO:0016138 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0016999 GO:0017000 GO:0017144 GO:0033302 GO:0033303 GO:0033329 GO:0033330 GO:0033485 GO:0035251 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046527 GO:0047213 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0052636 GO:0071704 GO:0080043 GO:0080044 GO:0080059 GO:0080167 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00942 ko00944 ko01100 ko01110 map00942 map00944 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

302

Amino Acids

32.47

Weight (kDa)

5.49

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAR1	PF06521	124 - 270	4.1e-74	PAR1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30530 AT5G17030 AT5G17040 AT5G17040 AT5G17050
fragaria_vesca	FvH4_7g33840
malus_domestica	MD01G1234400.v1.1 MD07G1306900.v1.1
prunus_persica	Prupe.2G324700_v2.0.a1
pyrus_communis	pycom07g27990
rosa_chinensis	RchiOBHm_Chr1g0383951
rosa_laevigata	RLG00000026084
rosa_multiflora	Rmu_sc0005139.1_g000025 Rmu_sc0033299.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277110
rosa_rugosa	Rorug01G0443800
rosa_samantha	Rh1AG469300 Rh1BG427000 Rh1CG439800 Rh1DG459800
rosa_wichuraiana	Rw1G040310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	814
AccBSI	CCGCTC	2 cut(s)	130, 462
AciI	CCGC	6 cut(s)	130, 284, 462, 484, 552, 562
AclWI	GGATC	2 cut(s)	279, 530
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	533
AdeI	CACNNNGTG	1 cut(s)	875
AfaI	GTAC	2 cut(s)	134, 214
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	99, 500, 673
AhdI	GACNNNNNGTC	1 cut(s)	565
AjnI	CCWGG	3 cut(s)	555, 778, 898
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	279, 530
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	3 cut(s)	3, 423, 553
ApeKI	GCWGC	5 cut(s)	281, 642, 645, 680, 754
ApoI	RAATTY	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	4 cut(s)	4, 35, 559, 782
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	698
AsuNHI	GCTAGC	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	3 cut(s)	35, 559, 782
BanI	GGYRCC	1 cut(s)	814
BbvI	GCAGC	5 cut(s)	268, 632, 654, 692, 741
BceAI	ACGGC	1 cut(s)	655
BciT130I	CCWGG	3 cut(s)	557, 780, 900
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	4 cut(s)	242, 278, 362, 386
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	7 cut(s)	282, 484, 553, 643, 646, 681, 755
BlsI	GCNGC	7 cut(s)	283, 485, 554, 644, 647, 682, 756
Bme1390I	CCNGG	4 cut(s)	33, 557, 780, 900
Bme18I	GGWCC	3 cut(s)	35, 559, 782
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	4 cut(s)	4, 35, 559, 782
BmiI	GGNNCC	3 cut(s)	37, 118, 816
BmrFI	CCNGG	4 cut(s)	33, 557, 780, 900
BmsI	GCATC	3 cut(s)	179, 272, 871
BmtI	GCTAGC	1 cut(s)	281
BpmI	CTGGAG	2 cut(s)	843, 870
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	524, 785, 818
BseBI	CCWGG	3 cut(s)	557, 780, 900
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	3 cut(s)	524, 785, 818
BseRI	GAGGAG	3 cut(s)	472, 584, 618
BseXI	GCAGC	5 cut(s)	268, 632, 654, 692, 741
BshFI	GGCC	3 cut(s)	5, 425, 555
BshNI	GGYRCC	1 cut(s)	814
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	606
BsnI	GGCC	3 cut(s)	5, 425, 555
BsoBI	CYCGRG	1 cut(s)	596
Bsp143I	GATC	2 cut(s)	271, 522
BspACI	CCGC	6 cut(s)	130, 284, 462, 484, 552, 562
BspANI	GGCC	3 cut(s)	5, 425, 555
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	37, 118, 816
BspOI	GCTAGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	279, 530
BspT107I	GGYRCC	1 cut(s)	814
BsrBI	CCGCTC	2 cut(s)	130, 462
BsrI	ACTGG	3 cut(s)	524, 785, 818
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	271, 522
Bst2UI	CCWGG	3 cut(s)	557, 780, 900
Bst6I	CTCTTC	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	3 cut(s)	279, 350, 533
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	2 cut(s)	274, 525
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	2 cut(s)	271, 522
BstMWI	GCNNNNNNNGC	8 cut(s)	290, 326, 354, 445, 537, 561, 642, 725
BstNI	CCWGG	3 cut(s)	557, 780, 900
BstNSI	RCATGY	2 cut(s)	378, 483
BstSCI	CCNGG	4 cut(s)	31, 555, 778, 898
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	5 cut(s)	268, 632, 654, 692, 741
BsuRI	GGCC	3 cut(s)	5, 425, 555
BtsCI	GGATG	1 cut(s)	581
BtsI	GCAGTG	2 cut(s)	417, 542
BtsIMutI	CAGTG	4 cut(s)	417, 542, 638, 890
Cac8I	GCNNGC	3 cut(s)	279, 350, 533
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	4 cut(s)	4, 35, 559, 782
CsiI	ACCWGGT	1 cut(s)	898
Csp6I	GTAC	2 cut(s)	133, 213
CviAII	CATG	4 cut(s)	375, 480, 829, 873
CviQI	GTAC	2 cut(s)	133, 213
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	2 cut(s)	273, 524
DpnII	GATC	2 cut(s)	271, 522
DraI	TTTAAA	1 cut(s)	67
DraIII	CACNNNGTG	1 cut(s)	875
DriI	GACNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	256
Eam1105I	GACNNNNNGTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	35, 559, 782
Eco57I	CTGAAG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	596
EcoRII	CCWGG	3 cut(s)	555, 778, 898
EcoT22I	ATGCAT	1 cut(s)	172
FaeI	CATG	4 cut(s)	378, 483, 832, 876
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	4 cut(s)	374, 479, 828, 872
Fnu4HI	GCNGC	7 cut(s)	282, 484, 553, 643, 646, 681, 755
FokI	GGATG	1 cut(s)	568
Fsp4HI	GCNGC	7 cut(s)	282, 484, 553, 643, 646, 681, 755
FspBI	CTAG	4 cut(s)	242, 278, 362, 386
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	7 cut(s)	282, 484, 553, 643, 646, 681, 755
GsuI	CTGGAG	2 cut(s)	843, 870
HaeIII	GGCC	3 cut(s)	5, 425, 555
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	4 cut(s)	378, 483, 832, 876
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	2 cut(s)	661, 799
HindII	GTYRAC	2 cut(s)	661, 799
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	5 cut(s)	95, 382, 576, 587, 599
HpaI	GTTAAC	1 cut(s)	799
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	4 cut(s)	135, 661, 799, 823
Hpy188I	TCNGA	5 cut(s)	94, 127, 493, 586, 751
Hpy188III	TCNNGA	4 cut(s)	310, 386, 526, 765
Hpy8I	GTNNAC	4 cut(s)	135, 661, 799, 823
HpyAV	CCTTC	3 cut(s)	508, 683, 710
HpyCH4IV	ACGT	2 cut(s)	450, 852
HpyCH4V	TGCA	6 cut(s)	170, 263, 320, 352, 540, 611
HpyF10VI	GCNNNNNNNGC	8 cut(s)	290, 326, 354, 445, 537, 561, 642, 725
HpyF3I	CTNAG	1 cut(s)	630
HpySE526I	ACGT	2 cut(s)	450, 852
Hsp92II	CATG	4 cut(s)	378, 483, 832, 876
HspAI	GCGC	1 cut(s)	776
KspAI	GTTAAC	1 cut(s)	799
Kzo9I	GATC	2 cut(s)	271, 522
LmnI	GCTCC	5 cut(s)	116, 459, 725, 862, 889
Lsp1109I	GCAGC	5 cut(s)	268, 632, 654, 692, 741
LweI	GCATC	3 cut(s)	179, 272, 871
MabI	ACCWGGT	1 cut(s)	898
MaeI	CTAG	4 cut(s)	242, 278, 362, 386
MaeII	ACGT	2 cut(s)	450, 852
MaeIII	GTNAC	2 cut(s)	370, 902
MalI	GATC	2 cut(s)	273, 524
MbiI	CCGCTC	2 cut(s)	130, 462
MboI	GATC	2 cut(s)	271, 522
MboII	GAAGA	4 cut(s)	38, 149, 165, 243
MluCI	AATT	3 cut(s)	22, 62, 707
MlyI	GAGTC	2 cut(s)	581, 608
MmeI	TCCRAC	2 cut(s)	129, 609
MnlI	CCTC	7 cut(s)	335, 450, 460, 605, 639, 686, 805
Mph1103I	ATGCAT	1 cut(s)	172
MseI	TTAA	3 cut(s)	66, 543, 798
MslI	CAYNNNNRTG	1 cut(s)	478
MspA1I	CMGCKG	2 cut(s)	645, 683
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	4 cut(s)	33, 557, 780, 900
MvaI	CCWGG	3 cut(s)	557, 780, 900
MwoI	GCNNNNNNNGC	8 cut(s)	290, 326, 354, 445, 537, 561, 642, 725
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	271, 522
NheI	GCTAGC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	378, 483, 832, 876
NlaIV	GGNNCC	3 cut(s)	37, 118, 816
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	2 cut(s)	378, 483
PaeR7I	CTCGAG	1 cut(s)	596
PciI	ACATGT	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	95, 382, 576
PkrI	GCNGC	7 cut(s)	283, 485, 554, 644, 647, 682, 756
PleI	GAGTC	2 cut(s)	581, 607
PpsI	GAGTC	2 cut(s)	581, 607
Ppu21I	YACGTR	1 cut(s)	451
PscI	ACATGT	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	555, 778, 898
PspGI	CCWGG	3 cut(s)	555, 778, 898
PspN4I	GGNNCC	3 cut(s)	37, 118, 816
PspPI	GGNCC	4 cut(s)	4, 35, 559, 782
PspXI	VCTCGAGB	1 cut(s)	596
PvuII	CAGCTG	2 cut(s)	645, 683
RsaI	GTAC	2 cut(s)	134, 214
RsaNI	GTAC	2 cut(s)	133, 213
RseI	CAYNNNNRTG	1 cut(s)	478
SaqAI	TTAA	3 cut(s)	66, 543, 798
SatI	GCNGC	7 cut(s)	282, 484, 553, 643, 646, 681, 755
Sau3AI	GATC	2 cut(s)	271, 522
Sau96I	GGNCC	4 cut(s)	4, 35, 559, 782
SchI	GAGTC	2 cut(s)	581, 608
ScrFI	CCNGG	4 cut(s)	33, 557, 780, 900
SexAI	ACCWGGT	1 cut(s)	898
SfaNI	GCATC	3 cut(s)	179, 272, 871
SfcI	CTRYAG	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	596
SinI	GGWCC	3 cut(s)	35, 559, 782
SlaI	CTCGAG	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	478
SmlI	CTYRAG	2 cut(s)	440, 596
SmoI	CTYRAG	2 cut(s)	440, 596
Sse9I	AATT	3 cut(s)	22, 62, 707
SsiI	CCGC	6 cut(s)	130, 284, 462, 484, 552, 562
SspMI	CTAG	4 cut(s)	242, 278, 362, 386
StyD4I	CCNGG	4 cut(s)	31, 555, 778, 898
TaiI	ACGT	2 cut(s)	453, 855
TaqI	TCGA	2 cut(s)	525, 597
TasI	AATT	3 cut(s)	22, 62, 707
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	2 cut(s)	486, 555
TfiI	GAWTC	3 cut(s)	95, 382, 576
Tru1I	TTAA	3 cut(s)	66, 543, 798
Tru9I	TTAA	3 cut(s)	66, 543, 798
TscAI	CASTG	4 cut(s)	417, 542, 638, 897
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	5 cut(s)	281, 642, 645, 680, 754
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	845
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	4 cut(s)	417, 542, 638, 897
VpaK11BI	GGWCC	3 cut(s)	35, 559, 782
XapI	RAATTY	1 cut(s)	62
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	2 cut(s)	378, 483
XhoI	CTCGAG	1 cut(s)	596
XspI	CTAG	4 cut(s)	242, 278, 362, 386
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.