Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009969

Physical Location & Seq

Genomic Coordinates Forward (+)

66385839 .. 66386665

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG459800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCACCAGCATCAAATCAGGTGGGTGGTCATGTGGCGGTGCTAGCCTTTCCCTTCTCGACTCACGCCGCCCCGCTGTTGAACATCGTCTGCCGCCTCGCCGCCGCCGCCCCAAACACCCTCTTCTCATTCTTCAACACCAAGCAATCCAATAGCTCGATCCTAGCAAGCAACACGTCATCCATACTACGTAACAGTAACGTAAGGGTGTGTGAGGTGGCGGATGGTGTGCCGGAGGGGTATGTTTTTGTGGGTAAGCCTCAGGAGGACATAGAGTTGTTCATGAAGGCTGCCCCGGACAACTTCAGGCGGTGCTTAGAGGCGTCCGTGGCGGAGACCGGGAGGGAGGTCAGCTGCTTGGTCACTGACGCTTTCTTTTGGTTCGGGGCTCACATGGCCGATGACTTGGGAGGACTGCCTTGGGTACCGTTTTGGACCGCCGGGCCAGCTTCACTCTCCGCTCATGTACACACCGATCTCATCAGGAACACAACTACTGACTTGTCTCGATCATTCATATGTTCAAATAAACAGGTATGGGTGGTCACGATGGAAAAGAAACCATCACTGCAGTCACTGCAGGAATGTCCAAAGTACGACCCCAGGATTTGCCAGAGGGAATCATCTTTGGAAAGTTGGACTCCCTCTTTTCACGGATGCTACACCAGATGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0016137 GO:0016138 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0016999 GO:0017000 GO:0017144 GO:0033302 GO:0033303 GO:0033329 GO:0033330 GO:0033485 GO:0035251 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046527 GO:0047213 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0052636 GO:0071704 GO:0080043 GO:0080044 GO:0080059 GO:0080167 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00942 ko00944 ko01100 ko01110 map00942 map00944 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

225

Amino Acids

24.78

Weight (kDa)

6.06

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30530 AT5G17030 AT5G17040 AT5G17040 AT5G17050
fragaria_vesca	FvH4_7g33840
malus_domestica	MD01G1234400.v1.1 MD07G1306900.v1.1
prunus_persica	Prupe.2G324700_v2.0.a1
pyrus_communis	pycom07g27990
rosa_chinensis	RchiOBHm_Chr1g0383951
rosa_laevigata	RLG00000026084
rosa_multiflora	Rmu_sc0005139.1_g000025 Rmu_sc0033299.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277110
rosa_rugosa	Rorug01G0443800
rosa_samantha	Rh1AG469300 Rh1BG427000 Rh1CG439800 Rh1DG459800
rosa_wichuraiana	Rw1G040310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	4, 424
AccBSI	CCGCTC	1 cut(s)	461
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	3 cut(s)	426, 468, 596
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	82, 136, 525
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	602
AluBI	AGCT	3 cut(s)	156, 354, 449
AluI	AGCT	3 cut(s)	156, 354, 449
Alw26I	GTCTC	2 cut(s)	329, 510
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	577
AoxI	GGCC	2 cut(s)	396, 443
ApeKI	GCWGC	2 cut(s)	290, 354
Asp718I	GGTACC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	435, 443
AsuC2I	CCSGG	3 cut(s)	296, 340, 442
AsuNHI	GCTAGC	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	435
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	4, 424
BanII	GRGCYC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	277, 341
BccI	CCATC	4 cut(s)	218, 544, 571, 663
BciT130I	CCWGG	1 cut(s)	604
BcnI	CCSGG	3 cut(s)	296, 340, 442
BcoDI	GTCTC	2 cut(s)	329, 510
BfaI	CTAG	2 cut(s)	44, 164
BfmI	CTRYAG	2 cut(s)	569, 578
BisI	GCNGC	7 cut(s)	69, 94, 102, 105, 108, 291, 355
BlsI	GCNGC	7 cut(s)	70, 95, 103, 106, 109, 292, 356
Bme1390I	CCNGG	4 cut(s)	296, 340, 442, 604
Bme18I	GGWCC	1 cut(s)	435
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	435, 443
BmiI	GGNNCC	2 cut(s)	6, 426
BmrFI	CCNGG	4 cut(s)	296, 340, 442, 604
BmsI	GCATC	2 cut(s)	20, 647
BmtI	GCTAGC	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	296, 340, 442
BsaAI	YACGTR	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	4 cut(s)	294, 327, 419, 602
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	604
BseDI	CCNNGG	4 cut(s)	294, 327, 419, 602
BseGI	GGATG	3 cut(s)	179, 229, 662
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	277, 341
BshFI	GGCC	2 cut(s)	398, 445
BshNI	GGYRCC	2 cut(s)	4, 424
BsiSI	CCGG	4 cut(s)	233, 296, 339, 441
BsmAI	GTCTC	2 cut(s)	329, 510
BsnI	GGCC	2 cut(s)	398, 445
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp1407I	TGTACA	1 cut(s)	466
Bsp143I	GATC	3 cut(s)	159, 475, 509
BspANI	GGCC	2 cut(s)	398, 445
BspCNI	CTCAG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	6, 426
BspMAI	CTGCAG	2 cut(s)	573, 582
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	154
BspT107I	GGYRCC	2 cut(s)	4, 424
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	294, 327, 419, 602
BssMI	GATC	3 cut(s)	159, 475, 509
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	604
Bst4CI	ACNGT	2 cut(s)	197, 429
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstAUI	TGTACA	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	45, 169, 447
BstDEI	CTNAG	2 cut(s)	261, 316
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	179, 229, 662
BstKTI	GATC	3 cut(s)	162, 478, 512
BstMAI	GTCTC	2 cut(s)	329, 510
BstMBI	GATC	3 cut(s)	159, 475, 509
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 107, 329, 395, 446, 577
BstNI	CCWGG	1 cut(s)	604
BstSCI	CCNGG	4 cut(s)	294, 338, 440, 602
BstSFI	CTRYAG	2 cut(s)	569, 578
BstSNI	TACGTA	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	277, 341
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	398, 445
BtgI	CCRYGG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	179, 229, 662
BtsI	GCAGTG	2 cut(s)	566, 575
BtsIMutI	CAGTG	3 cut(s)	363, 566, 575
Cac8I	GCNNGC	3 cut(s)	45, 169, 447
CaiI	CAGNNNCTG	1 cut(s)	577
CciI	TCATGA	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	435, 443
CseI	GACGC	2 cut(s)	312, 377
Csp6I	GTAC	3 cut(s)	425, 467, 595
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	4 cut(s)	32, 283, 394, 464
CviJI	RGCY	9 cut(s)	47, 156, 259, 290, 354, 389, 398, 445, 449
CviKI_1	RGCY	9 cut(s)	47, 156, 259, 290, 354, 389, 398, 445, 449
CviQI	GTAC	3 cut(s)	425, 467, 595
DdeI	CTNAG	2 cut(s)	261, 316
DpnI	GATC	3 cut(s)	161, 477, 511
DpnII	GATC	3 cut(s)	159, 475, 509
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	2 cut(s)	236, 347
Eco105I	TACGTA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	4 cut(s)	35, 286, 397, 467
FatI	CATG	4 cut(s)	31, 282, 393, 463
FauI	CCCGC	1 cut(s)	81
FauNDI	CATATG	1 cut(s)	518
Fnu4HI	GCNGC	7 cut(s)	69, 94, 102, 105, 108, 291, 355
FokI	GGATG	3 cut(s)	166, 236, 669
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	7 cut(s)	69, 94, 102, 105, 108, 291, 355
FspBI	CTAG	2 cut(s)	44, 164
GluI	GCNGC	7 cut(s)	69, 94, 102, 105, 108, 291, 355
HaeIII	GGCC	2 cut(s)	398, 445
HapII	CCGG	4 cut(s)	233, 296, 339, 441
HgaI	GACGC	2 cut(s)	312, 377
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	35, 286, 397, 467
HinfI	GANTC	3 cut(s)	61, 620, 640
HpaII	CCGG	4 cut(s)	233, 296, 339, 441
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188III	TCNNGA	6 cut(s)	58, 263, 283, 484, 507, 547
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	64, 280
HpyCH4III	ACNGT	2 cut(s)	197, 429
HpyCH4IV	ACGT	3 cut(s)	176, 190, 201
HpyCH4V	TGCA	2 cut(s)	571, 580
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 107, 329, 395, 446, 577
HpyF3I	CTNAG	2 cut(s)	261, 316
HpySE526I	ACGT	3 cut(s)	176, 190, 201
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	4 cut(s)	35, 286, 397, 467
KpnI	GGTACC	1 cut(s)	428
Kzo9I	GATC	3 cut(s)	159, 475, 509
Lsp1109I	GCAGC	2 cut(s)	277, 341
LweI	GCATC	2 cut(s)	20, 647
MaeI	CTAG	2 cut(s)	44, 164
MaeII	ACGT	3 cut(s)	176, 190, 201
MaeIII	GTNAC	5 cut(s)	191, 197, 361, 544, 573
MalI	GATC	3 cut(s)	161, 477, 511
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	3 cut(s)	159, 475, 509
MboII	GAAGA	2 cut(s)	115, 124
MhlI	GDGCHC	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	55, 634
MmeI	TCCRAC	1 cut(s)	617
MslI	CAYNNNNRTG	1 cut(s)	517
MspA1I	CMGCKG	2 cut(s)	76, 354
MspI	CCGG	4 cut(s)	233, 296, 339, 441
MspR9I	CCNGG	4 cut(s)	296, 340, 442, 604
MvaI	CCWGG	1 cut(s)	604
MwoI	GCNNNNNNNGC	6 cut(s)	44, 107, 329, 395, 446, 577
NciI	CCSGG	3 cut(s)	296, 340, 442
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	3 cut(s)	159, 475, 509
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	35, 286, 397, 467
NlaIV	GGNNCC	2 cut(s)	6, 426
NmuCI	GTSAC	3 cut(s)	361, 544, 573
PagI	TCATGA	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	7 cut(s)	70, 95, 103, 106, 109, 292, 356
PleI	GAGTC	2 cut(s)	55, 634
PpsI	GAGTC	2 cut(s)	55, 634
Ppu21I	YACGTR	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	602
PspN4I	GGNNCC	2 cut(s)	6, 426
PspPI	GGNCC	2 cut(s)	435, 443
PstI	CTGCAG	2 cut(s)	573, 582
PstNI	CAGNNNCTG	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	354
RsaI	GTAC	3 cut(s)	426, 468, 596
RsaNI	GTAC	3 cut(s)	425, 467, 595
RseI	CAYNNNNRTG	1 cut(s)	517
SatI	GCNGC	7 cut(s)	69, 94, 102, 105, 108, 291, 355
Sau3AI	GATC	3 cut(s)	159, 475, 509
Sau96I	GGNCC	2 cut(s)	435, 443
SchI	GAGTC	2 cut(s)	55, 634
ScrFI	CCNGG	4 cut(s)	296, 340, 442, 604
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	20, 647
SfcI	CTRYAG	2 cut(s)	569, 578
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	517
SnaBI	TACGTA	1 cut(s)	191
SspMI	CTAG	2 cut(s)	44, 164
StyD4I	CCNGG	4 cut(s)	294, 338, 440, 602
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	197, 429
TaiI	ACGT	3 cut(s)	179, 193, 204
TaqI	TCGA	3 cut(s)	59, 158, 508
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	5 cut(s)	71, 96, 104, 107, 110
TfiI	GAWTC	1 cut(s)	620
TscAI	CASTG	3 cut(s)	370, 573, 582
TseFI	GTSAC	3 cut(s)	361, 544, 573
TseI	GCWGC	2 cut(s)	290, 354
Tsp45I	GTSAC	3 cut(s)	361, 544, 573
TspDTI	ATGAA	3 cut(s)	271, 299, 505
TspGWI	ACGGA	2 cut(s)	316, 669
TspRI	CASTG	3 cut(s)	370, 573, 582
VpaK11BI	GGWCC	1 cut(s)	435
XspI	CTAG	2 cut(s)	44, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.