Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009969

Physical Location & Seq

Genomic Coordinates Forward (+)

68255319 .. 68256136

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG469300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCACCAGCATCAAATCAGGTGGGTGGTCATGTGGCGGTGCTAGCCTTTCCCTTCTCGACTCACGCCGCCCCGCTGTTGAACATCGTCTGCCGCCTCGCCGCCGCCGCCCCAAACACCCTCTTCTCATTCTTCAACACCAAGCAATCCAATAGCTCGATCCTAGCAAGCAACACGTCCATACTACGTAACAGTAACGTAAGGGTGTGTGAGGTGGCGGATGGTGTGCCGGAGGGGTATGTTTTTGTGGGTAAGCCTCAGGAGGACATAGAGTTGTTCATGAAGGCTGCCCCGGACAACTTCAGGCGGTGCTTAGAGGCGTCCGTGGCGGAGACCGGGAGGAAGGTCACCTGCTTGGTCACTGACGCTTTCTTTTGGTTCGGGGCTCACATGGCCGATGACTTGGGTGGACTGCCTTGGGTACCGTTTTGGACCGCCGGGCCAGCTTCACTCTCCGCTCATGTACACACCGATCTCATCAGGAACACAACTATCTCATCATGTGTGTACCAAAACAAGCAGACACAAGTACATATATACATATCTATTGATCGACCCAAAATGATTATATTACTAGCTGACTTGTTTCGATCATGCATATGTTCAAATAAACAGGTATGGGTGGTCACGATGGAAAAGAAACCATCACTGTCATTGCAGGAATGTCCAAAGTACGACCCCAGGATTTGCCAGAGGGAATCATCTTTGGAAAGTTGGACTCCCTCTTTTCACGGATGCTACACCAGATGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0016137 GO:0016138 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0016999 GO:0017000 GO:0017144 GO:0033302 GO:0033303 GO:0033329 GO:0033330 GO:0033485 GO:0035251 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046527 GO:0047213 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0052636 GO:0071704 GO:0080043 GO:0080044 GO:0080059 GO:0080167 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00942 ko00944 ko01100 ko01110 map00942 map00944 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

251

Amino Acids

27.85

Weight (kDa)

7.56

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30530 AT5G17030 AT5G17040 AT5G17040 AT5G17050
fragaria_vesca	FvH4_7g33840
malus_domestica	MD01G1234400.v1.1 MD07G1306900.v1.1
prunus_persica	Prupe.2G324700_v2.0.a1
pyrus_communis	pycom07g27990
rosa_chinensis	RchiOBHm_Chr1g0383951
rosa_laevigata	RLG00000026084
rosa_multiflora	Rmu_sc0005139.1_g000025 Rmu_sc0033299.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277110
rosa_rugosa	Rorug01G0443800
rosa_samantha	Rh1AG469300 Rh1BG427000 Rh1CG439800 Rh1DG459800
rosa_wichuraiana	Rw1G040310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	359
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	2 cut(s)	4, 421
AccBSI	CCGCTC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	5 cut(s)	423, 465, 509, 531, 674
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	82, 136, 606
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	680
AluBI	AGCT	3 cut(s)	156, 446, 578
AluI	AGCT	3 cut(s)	156, 446, 578
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	2 cut(s)	393, 440
ApeKI	GCWGC	1 cut(s)	287
Asp718I	GGTACC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	432, 440
AsuC2I	CCSGG	3 cut(s)	293, 337, 439
AsuHPI	GGTGA	1 cut(s)	340
AsuNHI	GCTAGC	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	432
AxyI	CCTNAGG	1 cut(s)	258
BanI	GGYRCC	2 cut(s)	4, 421
BanII	GRGCYC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	4 cut(s)	215, 625, 652, 741
BciT130I	CCWGG	1 cut(s)	682
BcnI	CCSGG	3 cut(s)	293, 337, 439
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	3 cut(s)	44, 164, 575
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	6 cut(s)	69, 94, 102, 105, 108, 288
BlsI	GCNGC	6 cut(s)	70, 95, 103, 106, 109, 289
Bme1390I	CCNGG	4 cut(s)	293, 337, 439, 682
Bme18I	GGWCC	1 cut(s)	432
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	432, 440
BmiI	GGNNCC	2 cut(s)	6, 423
BmrFI	CCNGG	4 cut(s)	293, 337, 439, 682
BmsI	GCATC	2 cut(s)	20, 725
BmtI	GCTAGC	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	293, 337, 439
BsaAI	YACGTR	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	4 cut(s)	291, 324, 416, 680
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	653
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	4 cut(s)	291, 324, 416, 680
BseGI	GGATG	2 cut(s)	226, 740
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	2 cut(s)	395, 442
BshNI	GGYRCC	2 cut(s)	4, 421
BsiSI	CCGG	4 cut(s)	230, 293, 336, 438
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	395, 442
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	159, 472, 550, 590
BspANI	GGCC	2 cut(s)	395, 442
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	6, 423
BspMI	ACCTGC	1 cut(s)	359
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	154
BspT107I	GGYRCC	2 cut(s)	4, 421
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	653
BsrGI	TGTACA	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	291, 324, 416, 680
BssMI	GATC	4 cut(s)	159, 472, 550, 590
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	3 cut(s)	194, 426, 651
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	45, 169, 444
BstDEI	CTNAG	2 cut(s)	258, 313
BstDSI	CCRYGG	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	226, 740
BstKTI	GATC	4 cut(s)	162, 475, 553, 593
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	4 cut(s)	159, 472, 550, 590
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 107, 326, 392, 443
BstNI	CCWGG	1 cut(s)	682
BstPI	GGTNACC	1 cut(s)	346
BstSCI	CCNGG	4 cut(s)	291, 335, 437, 680
BstSNI	TACGTA	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	395, 442
BtgI	CCRYGG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	226, 740
BtsIMutI	CAGTG	2 cut(s)	360, 647
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	45, 169, 444
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	432, 440
CseI	GACGC	2 cut(s)	309, 374
Csp6I	GTAC	5 cut(s)	422, 464, 508, 530, 673
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	6 cut(s)	32, 280, 391, 461, 501, 594
CviJI	RGCY	9 cut(s)	47, 156, 256, 287, 386, 395, 442, 446, 578
CviKI_1	RGCY	9 cut(s)	47, 156, 256, 287, 386, 395, 442, 446, 578
CviQI	GTAC	5 cut(s)	422, 464, 508, 530, 673
DdeI	CTNAG	2 cut(s)	258, 313
DpnI	GATC	4 cut(s)	161, 474, 552, 592
DpnII	GATC	4 cut(s)	159, 472, 550, 590
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	2 cut(s)	233, 344
Eco105I	TACGTA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	286
Eco81I	CCTNAGG	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	680
EcoT14I	CCWWGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	599
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	6 cut(s)	35, 283, 394, 464, 504, 597
FatI	CATG	6 cut(s)	31, 279, 390, 460, 500, 593
FauI	CCCGC	1 cut(s)	81
FauNDI	CATATG	1 cut(s)	599
Fnu4HI	GCNGC	6 cut(s)	69, 94, 102, 105, 108, 288
FokI	GGATG	2 cut(s)	233, 747
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	6 cut(s)	69, 94, 102, 105, 108, 288
FspBI	CTAG	3 cut(s)	44, 164, 575
GluI	GCNGC	6 cut(s)	69, 94, 102, 105, 108, 288
HaeIII	GGCC	2 cut(s)	395, 442
HapII	CCGG	4 cut(s)	230, 293, 336, 438
HgaI	GACGC	2 cut(s)	309, 374
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	6 cut(s)	35, 283, 394, 464, 504, 597
HinfI	GANTC	3 cut(s)	61, 698, 718
HpaII	CCGG	4 cut(s)	230, 293, 336, 438
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	3 cut(s)	410, 466, 508
Hpy188III	TCNNGA	5 cut(s)	58, 260, 280, 481, 628
Hpy8I	GTNNAC	3 cut(s)	410, 466, 508
HpyAV	CCTTC	3 cut(s)	64, 277, 337
HpyCH4III	ACNGT	3 cut(s)	194, 426, 651
HpyCH4IV	ACGT	3 cut(s)	176, 187, 198
HpyCH4V	TGCA	2 cut(s)	597, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 107, 326, 392, 443
HpyF3I	CTNAG	2 cut(s)	258, 313
HpySE526I	ACGT	3 cut(s)	176, 187, 198
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	6 cut(s)	35, 283, 394, 464, 504, 597
KpnI	GGTACC	1 cut(s)	425
Kzo9I	GATC	4 cut(s)	159, 472, 550, 590
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	20, 725
MaeI	CTAG	3 cut(s)	44, 164, 575
MaeII	ACGT	3 cut(s)	176, 187, 198
MaeIII	GTNAC	5 cut(s)	188, 194, 346, 358, 625
MalI	GATC	4 cut(s)	161, 474, 552, 592
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	4 cut(s)	159, 472, 550, 590
MboII	GAAGA	2 cut(s)	115, 124
MhlI	GDGCHC	1 cut(s)	388
MlyI	GAGTC	2 cut(s)	55, 712
MmeI	TCCRAC	1 cut(s)	695
Mph1103I	ATGCAT	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	598
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	4 cut(s)	230, 293, 336, 438
MspR9I	CCNGG	4 cut(s)	293, 337, 439, 682
MvaI	CCWGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	5 cut(s)	44, 107, 326, 392, 443
NciI	CCSGG	3 cut(s)	293, 337, 439
NdeI	CATATG	1 cut(s)	599
NdeII	GATC	4 cut(s)	159, 472, 550, 590
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	6 cut(s)	35, 283, 394, 464, 504, 597
NlaIV	GGNNCC	2 cut(s)	6, 423
NmuCI	GTSAC	3 cut(s)	346, 358, 625
NsiI	ATGCAT	1 cut(s)	599
PagI	TCATGA	1 cut(s)	279
PaqCI	CACCTGC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	698
PkrI	GCNGC	6 cut(s)	70, 95, 103, 106, 109, 289
PleI	GAGTC	2 cut(s)	55, 712
PpsI	GAGTC	2 cut(s)	55, 712
Ppu21I	YACGTR	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	680
PspEI	GGTNACC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	2 cut(s)	6, 423
PspPI	GGNCC	2 cut(s)	432, 440
RsaI	GTAC	5 cut(s)	423, 465, 509, 531, 674
RsaNI	GTAC	5 cut(s)	422, 464, 508, 530, 673
RseI	CAYNNNNRTG	1 cut(s)	598
SatI	GCNGC	6 cut(s)	69, 94, 102, 105, 108, 288
Sau3AI	GATC	4 cut(s)	159, 472, 550, 590
Sau96I	GGNCC	2 cut(s)	432, 440
SchI	GAGTC	2 cut(s)	55, 712
ScrFI	CCNGG	4 cut(s)	293, 337, 439, 682
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	2 cut(s)	20, 725
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	598
SnaBI	TACGTA	1 cut(s)	188
SspMI	CTAG	3 cut(s)	44, 164, 575
StyD4I	CCNGG	4 cut(s)	291, 335, 437, 680
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	3 cut(s)	194, 426, 651
TaiI	ACGT	3 cut(s)	179, 190, 201
TaqI	TCGA	4 cut(s)	59, 158, 553, 589
TatI	WGTACW	2 cut(s)	463, 529
TauI	GCSGC	5 cut(s)	71, 96, 104, 107, 110
TfiI	GAWTC	1 cut(s)	698
TscAI	CASTG	2 cut(s)	367, 654
TseFI	GTSAC	3 cut(s)	346, 358, 625
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	3 cut(s)	346, 358, 625
TspDTI	ATGAA	2 cut(s)	268, 296
TspGWI	ACGGA	2 cut(s)	313, 747
TspRI	CASTG	2 cut(s)	367, 654
VpaK11BI	GGWCC	1 cut(s)	432
XspI	CTAG	3 cut(s)	44, 164, 575
Zsp2I	ATGCAT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.