Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009969

Physical Location & Seq

Genomic Coordinates Forward (+)

69343515 .. 69344637

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG439800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCACCAGCATCAAATCAGGTGGGTGGTCATGTGGCGGTGCTAGCCTTTCCCTTCTCGACTCACGCCGCCCCGCTGTTGAACATCGTCCGCCGCCTCGCCGCCGCCACCCCAAACACCCTCTTCTCATTCTTCAACACCAAGCAATCCAATAGCTCGATCCTAGCAAGCAACACGTCCATACTACGTAACAGTAACGTAAGGGTGTGTGAGGTGGCGGATGGTGTGCCGGAGGGGTATGTTTTTGTGGGTAAGCCTCAGGAGGACATAGAGTTGTTCATGAAGGCTGCCCCGGACAACTTCAGGCGGTGCTTAGAGGCGTCCGTGGCGGAGACCGGGAGGAAGGTCAGCTGCTTGGTCACTGACGCTTTCTTTTGGTTCGGGGCTCACATGGCCGATGACTTGGGTGGACTGCCTTGGGTACCGTTTTGGACCGCCGGGCCAGCTTCACTCTCCGCTCATGTACACACCGATCTCATCAGGAACACAACTAGTATGGGTGGTCACGATGGAAAAGAAAGCATCACTGTCATTGCAGGAATGTCCAAAGTACGACCCCAGGATTTGCCAGAGGGAATCATCTTTGGAAAGTTGGACTCCCTCTTTTCACGGATGCTACACCAGATGGGACTAATGCTACCACTTGCAACAGCAGTTTTCATCAACTCCTTCGAAGAACTAGACCCTGTGATCACAAATGATTTGAAGTCCAAATTCAAGAGGTACCTCAACGTGGGACCCTTCGACCTACTAGAGTCACCAGCACCAGCAGCCCCCACCACACTGCAGACTGGGGACGTTGTTGTCGGAGATGGCTGCTTATCGTGGCTTGACAAACAGAAGGCGGCGTCTGTAGTGTATGTGAGTTTTGGATCAGTAACAAGACCATCGCCGGAGGAGCTTATGGCGCTAGCCGAGGCGTTGGAAGCCAGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0016137 GO:0016138 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0016999 GO:0017000 GO:0017144 GO:0033302 GO:0033303 GO:0033329 GO:0033330 GO:0033485 GO:0035251 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0046527 GO:0047213 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0052636 GO:0071704 GO:0080043 GO:0080044 GO:0080059 GO:0080167 GO:1901038 GO:1901135 GO:1901137 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659 GO:1901804 GO:1901806

KEGG Pathways

Metabolic & Signaling

ko00942 ko00944 ko01100 ko01110 map00942 map00944 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

312

Amino Acids

33.53

Weight (kDa)

5.5

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30530 AT5G17030 AT5G17040 AT5G17040 AT5G17050
fragaria_vesca	FvH4_7g33840
malus_domestica	MD01G1234400.v1.1 MD07G1306900.v1.1
prunus_persica	Prupe.2G324700_v2.0.a1
pyrus_communis	pycom07g27990
rosa_chinensis	RchiOBHm_Chr1g0383951
rosa_laevigata	RLG00000026084
rosa_multiflora	Rmu_sc0005139.1_g000025 Rmu_sc0033299.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277110
rosa_rugosa	Rorug01G0443800
rosa_samantha	Rh1AG469300 Rh1BG427000 Rh1CG439800 Rh1DG459800
rosa_wichuraiana	Rw1G040310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	803
Acc65I	GGTACC	2 cut(s)	421, 723
AccB1I	GGYRCC	3 cut(s)	4, 421, 723
AccBSI	CCGCTC	1 cut(s)	458
AclWI	GGATC	2 cut(s)	154, 880
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	1 cut(s)	286
AcyI	GRCGYC	2 cut(s)	320, 848
AfaI	GTAC	5 cut(s)	423, 465, 552, 725, 934
AfiI	CCNNNNNNNGG	1 cut(s)	733
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	4 cut(s)	82, 136, 706, 718
AhlI	ACTAGT	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	4 cut(s)	156, 351, 446, 901
AluI	AGCT	4 cut(s)	156, 351, 446, 901
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	154, 880
AoxI	GGCC	2 cut(s)	393, 440
ApeKI	GCWGC	4 cut(s)	287, 351, 770, 816
ApoI	RAATTY	1 cut(s)	713
Asp718I	GGTACC	2 cut(s)	421, 723
AspLEI	GCGC	1 cut(s)	910
AspS9I	GGNCC	3 cut(s)	432, 440, 737
AsuC2I	CCSGG	3 cut(s)	293, 337, 439
AsuHPI	GGTGA	1 cut(s)	750
AsuII	TTCGAA	1 cut(s)	672
AsuNHI	GCTAGC	2 cut(s)	43, 910
AvaII	GGWCC	2 cut(s)	432, 737
AxyI	CCTNAGG	1 cut(s)	258
BanI	GGYRCC	3 cut(s)	4, 421, 723
BanII	GRGCYC	1 cut(s)	388
BbvI	GCAGC	4 cut(s)	274, 338, 782, 803
BccI	CCATC	5 cut(s)	215, 503, 619, 806, 895
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	3 cut(s)	293, 337, 439
BcoDI	GTCTC	1 cut(s)	326
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	6 cut(s)	44, 164, 492, 680, 752, 911
BfmI	CTRYAG	2 cut(s)	785, 852
BfoI	RGCGCY	1 cut(s)	911
BisI	GCNGC	9 cut(s)	69, 94, 102, 105, 288, 352, 771, 817, 846
BlsI	GCNGC	9 cut(s)	70, 95, 103, 106, 289, 353, 772, 818, 847
Bme1390I	CCNGG	4 cut(s)	293, 337, 439, 560
Bme18I	GGWCC	2 cut(s)	432, 737
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	3 cut(s)	432, 440, 737
BmiI	GGNNCC	5 cut(s)	6, 423, 725, 738, 739
BmrFI	CCNGG	4 cut(s)	293, 337, 439, 560
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	3 cut(s)	20, 531, 603
BmtI	GCTAGC	2 cut(s)	47, 914
BmuI	ACTGGG	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	672
BpuMI	CCSGG	3 cut(s)	293, 337, 439
BsaAI	YACGTR	2 cut(s)	188, 936
BsaHI	GRCGYC	2 cut(s)	320, 848
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	5 cut(s)	291, 324, 416, 558, 915
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	2 cut(s)	796, 930
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	5 cut(s)	291, 324, 416, 558, 915
BseGI	GGATG	2 cut(s)	226, 618
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	796, 930
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	4 cut(s)	274, 338, 782, 803
BshFI	GGCC	2 cut(s)	395, 442
BshNI	GGYRCC	3 cut(s)	4, 421, 723
BsiSI	CCGG	5 cut(s)	230, 293, 336, 438, 893
BslFI	GGGAC	3 cut(s)	642, 750, 809
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	3 cut(s)	642, 750, 809
BsnI	GGCC	2 cut(s)	395, 442
Bso31I	GGTCTC	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	672
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	159, 472, 690, 872
BspANI	GGCC	2 cut(s)	395, 442
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	5 cut(s)	6, 423, 725, 738, 739
BspMAI	CTGCAG	1 cut(s)	789
BspOI	GCTAGC	2 cut(s)	47, 914
BspPI	GGATC	2 cut(s)	154, 880
BspT104I	TTCGAA	1 cut(s)	672
BspT107I	GGYRCC	3 cut(s)	4, 421, 723
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	531
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	796, 930
BssECI	CCNNGG	5 cut(s)	291, 324, 416, 558, 915
BssMI	GATC	4 cut(s)	159, 472, 690, 872
BssNI	GRCGYC	2 cut(s)	320, 848
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	3 cut(s)	194, 426, 529
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	2 cut(s)	320, 848
BstAUI	TGTACA	1 cut(s)	463
BstBAI	YACGTR	2 cut(s)	188, 936
BstBI	TTCGAA	1 cut(s)	672
BstC8I	GCNNGC	4 cut(s)	45, 169, 444, 912
BstDEI	CTNAG	2 cut(s)	258, 313
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	226, 618
BstH2I	RGCGCY	1 cut(s)	911
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	4 cut(s)	162, 475, 693, 875
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	4 cut(s)	159, 472, 690, 872
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 326, 392, 443, 770, 898, 907, 926
BstNI	CCWGG	1 cut(s)	560
BstSCI	CCNGG	4 cut(s)	291, 335, 437, 558
BstSFI	CTRYAG	2 cut(s)	785, 852
BstSNI	TACGTA	2 cut(s)	188, 936
BstV1I	GCAGC	4 cut(s)	274, 338, 782, 803
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	395, 442
BtgI	CCRYGG	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	873
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	226, 618
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	360, 525, 782
Cac8I	GCNNGC	4 cut(s)	45, 169, 444, 912
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	910
Cfr13I	GGNCC	3 cut(s)	432, 440, 737
CseI	GACGC	3 cut(s)	309, 374, 837
Csp6I	GTAC	5 cut(s)	422, 464, 551, 724, 933
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	4 cut(s)	32, 280, 391, 461
CviQI	GTAC	5 cut(s)	422, 464, 551, 724, 933
DdeI	CTNAG	2 cut(s)	258, 313
DpnI	GATC	4 cut(s)	161, 474, 692, 874
DpnII	GATC	4 cut(s)	159, 472, 690, 872
DrdI	GACNNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	803
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	3 cut(s)	80, 233, 344
Eco105I	TACGTA	2 cut(s)	188, 936
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	432, 737
Eco57I	CTGAAG	1 cut(s)	286
Eco81I	CCTNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	4 cut(s)	35, 283, 394, 464
FaqI	GGGAC	3 cut(s)	642, 750, 809
FatI	CATG	4 cut(s)	31, 279, 390, 460
FauI	CCCGC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	9 cut(s)	69, 94, 102, 105, 288, 352, 771, 817, 846
FokI	GGATG	2 cut(s)	233, 625
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	9 cut(s)	69, 94, 102, 105, 288, 352, 771, 817, 846
FspBI	CTAG	6 cut(s)	44, 164, 492, 680, 752, 911
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	9 cut(s)	69, 94, 102, 105, 288, 352, 771, 817, 846
HaeII	RGCGCY	1 cut(s)	911
HaeIII	GGCC	2 cut(s)	395, 442
HapII	CCGG	5 cut(s)	230, 293, 336, 438, 893
HgaI	GACGC	3 cut(s)	309, 374, 837
HhaI	GCGC	1 cut(s)	910
Hin1I	GRCGYC	2 cut(s)	320, 848
Hin1II	CATG	4 cut(s)	35, 283, 394, 464
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HinfI	GANTC	4 cut(s)	61, 576, 596, 755
HpaII	CCGG	5 cut(s)	230, 293, 336, 438, 893
HphI	GGTGA	1 cut(s)	750
Hpy166II	GTNNAC	2 cut(s)	410, 466
Hpy188I	TCNGA	1 cut(s)	809
Hpy188III	TCNNGA	6 cut(s)	58, 260, 280, 481, 506, 718
Hpy8I	GTNNAC	2 cut(s)	410, 466
HpyAV	CCTTC	6 cut(s)	64, 277, 337, 679, 751, 835
HpyCH4III	ACNGT	3 cut(s)	194, 426, 529
HpyCH4IV	ACGT	6 cut(s)	176, 187, 198, 732, 798, 935
HpyCH4V	TGCA	3 cut(s)	536, 647, 787
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 326, 392, 443, 770, 898, 907, 926
HpyF3I	CTNAG	2 cut(s)	258, 313
HpySE526I	ACGT	6 cut(s)	176, 187, 198, 732, 798, 935
Hsp92I	GRCGYC	2 cut(s)	320, 848
Hsp92II	CATG	4 cut(s)	35, 283, 394, 464
HspAI	GCGC	1 cut(s)	908
KflI	GGGWCCC	1 cut(s)	737
KpnI	GGTACC	2 cut(s)	425, 727
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	159, 472, 690, 872
LmnI	GCTCC	1 cut(s)	898
Lsp1109I	GCAGC	4 cut(s)	274, 338, 782, 803
LweI	GCATC	3 cut(s)	20, 531, 603
MaeI	CTAG	6 cut(s)	44, 164, 492, 680, 752, 911
MaeII	ACGT	6 cut(s)	176, 187, 198, 732, 798, 935
MaeIII	GTNAC	6 cut(s)	188, 194, 358, 503, 756, 877
MalI	GATC	4 cut(s)	161, 474, 692, 874
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	4 cut(s)	159, 472, 690, 872
MboII	GAAGA	3 cut(s)	115, 124, 686
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	713
MlyI	GAGTC	3 cut(s)	55, 590, 764
MmeI	TCCRAC	3 cut(s)	573, 787, 903
MspA1I	CMGCKG	2 cut(s)	76, 351
MspI	CCGG	5 cut(s)	230, 293, 336, 438, 893
MspR9I	CCNGG	4 cut(s)	293, 337, 439, 560
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	8 cut(s)	44, 326, 392, 443, 770, 898, 907, 926
NciI	CCSGG	3 cut(s)	293, 337, 439
NdeII	GATC	4 cut(s)	159, 472, 690, 872
NheI	GCTAGC	2 cut(s)	43, 910
NlaIII	CATG	4 cut(s)	35, 283, 394, 464
NlaIV	GGNNCC	5 cut(s)	6, 423, 725, 738, 739
NmuCI	GTSAC	3 cut(s)	358, 503, 756
NspV	TTCGAA	1 cut(s)	672
PagI	TCATGA	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	576
PkrI	GCNGC	9 cut(s)	70, 95, 103, 106, 289, 353, 772, 818, 847
PleI	GAGTC	3 cut(s)	55, 590, 763
PpsI	GAGTC	3 cut(s)	55, 590, 763
Ppu21I	YACGTR	2 cut(s)	188, 936
PpuMI	RGGWCCY	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	5 cut(s)	6, 423, 725, 738, 739
PspPI	GGNCC	3 cut(s)	432, 440, 737
PspPPI	RGGWCCY	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	789
PvuII	CAGCTG	1 cut(s)	351
RsaI	GTAC	5 cut(s)	423, 465, 552, 725, 934
RsaNI	GTAC	5 cut(s)	422, 464, 551, 724, 933
SatI	GCNGC	9 cut(s)	69, 94, 102, 105, 288, 352, 771, 817, 846
Sau3AI	GATC	4 cut(s)	159, 472, 690, 872
Sau96I	GGNCC	3 cut(s)	432, 440, 737
SchI	GAGTC	3 cut(s)	55, 590, 764
ScrFI	CCNGG	4 cut(s)	293, 337, 439, 560
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	3 cut(s)	20, 531, 603
SfcI	CTRYAG	2 cut(s)	785, 852
SfuI	TTCGAA	1 cut(s)	672
SinI	GGWCC	2 cut(s)	432, 737
SnaBI	TACGTA	2 cut(s)	188, 936
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	1 cut(s)	713
SspMI	CTAG	6 cut(s)	44, 164, 492, 680, 752, 911
StyD4I	CCNGG	4 cut(s)	291, 335, 437, 558
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	3 cut(s)	194, 426, 529
TaiI	ACGT	6 cut(s)	179, 190, 201, 735, 801, 938
TaqI	TCGA	4 cut(s)	59, 158, 672, 744
TasI	AATT	1 cut(s)	713
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	5 cut(s)	71, 96, 104, 107, 848
TfiI	GAWTC	1 cut(s)	576
TscAI	CASTG	3 cut(s)	367, 532, 789
TseFI	GTSAC	3 cut(s)	358, 503, 756
TseI	GCWGC	4 cut(s)	287, 351, 770, 816
Tsp45I	GTSAC	3 cut(s)	358, 503, 756
TspDTI	ATGAA	3 cut(s)	268, 296, 649
TspGWI	ACGGA	2 cut(s)	313, 625
TspRI	CASTG	3 cut(s)	367, 532, 789
VpaK11BI	GGWCC	2 cut(s)	432, 737
XapI	RAATTY	1 cut(s)	713
XspI	CTAG	6 cut(s)	44, 164, 492, 680, 752, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.