Rorug01G0472000

PB1 domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
56272410 .. 56283604
11195 bp
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UTR
Exon/CDS
Intron
Rorug01G0472000.1

Sequence Viewer

Length: 7245 bp
ATGGATGAAAGGATAGACAAAGTGTTTTTTGAGACGAAACGGCACATTACTAGACCGTGTTCTCCTAATTATCCTCCTCAACAGGCAAATGATGGTGGTAAAGGGAACATTCGATCACTGCTTTCCTTTCGAGGTATCAGTCAACTCAGAGAAAAATGGAACGAATACAAGCAACCAAAAAAAATGAGAAGATTGACATCCTTGTTTATCTCTCCAAGAGGTGAGCATGTAGCTGTGGTTGCTGGAAATCAGATAACAATTTTGAAGAAGGAGGATGACTACTCAGAGCCATGTGGGACTTTTACAAGCGGCAGCCCTGCTTCATTTACAACAGGAACCTGGTCAGAAAGTCATGATGTTCTTGGTGTGTCTGATGATACCGATACATTATATTTTATCAAAGCAAATGGTTCAGAGATAGTGAGAATCAGCAGGAGGCAATTAAAAGTATCTCTACCAGTGATAAGCTTGGTTGTGCTGGATGATTCTGATGTACAGAAATCTTGTTTGTGTAGTTTCATTATCATTACATCTGATGGTTCCCTCCAGCATATTGAGATTAGTCAGGATCCAAGTTCCTCTATCTATTCTGCACAGACCTCACATAATGGACTAACTGTAAAGGGACAGTCCGCTCATATCGTTTTGTGTGTTGACTATCATCCAGAGCTTTCTTTGCTTGCTGGTGTCACATTAACATCAGGGTCTTGTTATATTTCTCTTTGGCGTAGAAGTGGGATAATTGATCTGGAGCAGTTGTTTACTATTCAGTTTGATGGTTTTTATTTCAAACCAATAGCTCTTGGAAGTCAGCTAGCATATCCAAAGGTTCTAATCTCACCACAAGCCAAATTTGTGGCTACTTTAGATCTGACAGGAAGGTTGCACGTATTTAAGATGGATAAAGAAAGGTTTTCACTTTCAAAATTTACATGCAGAGAGAGATACGAGTCACAAGTGACAAATAATTTGTCAAGTGGAGAAGGGAAAGAGTTAATTGATATTGTTGACTTTACATGGTGGTCCGACCACATCCTTACTTTTGCAAAGCGGAGTGGCCTTGTGACCATGCTTGACCTTCTAAGTGGGTTAGAAGTAGAGGAGAATGGAACTGTATATTCTAAGCCTGTTTTAGAAAGAATAAAGTTGTTTCAAGGAAATCTGTTTCTTTTGGAAACTTTGACTTCTGATGAGAGATCTAGTTCTGATGAAACTAAAGATTCACATACGATGGAGTGGATAACTATGGACAGCCTTGACCAAATTGACATTTCCAGGTTGAACTGGAGCCTCGTATCATTTTCTGAGAGATCCGTTGTTGAAATGTATAATATTTTACTTCGAAATAAAAAGTATCAAGCTGCCTTGGAATTTGCTGATCGTCATGGGCTGGACAAAGATGAAGTTATAAAATCACAATGGTTACACTCCAACCAAGGAGCAAATGAAATAAGTACATTCTTGTCAAAGGTTAAGGATAAACATTTTGTACTCTCTGAATGTGTTGAAGAGGTTGGACCAGCAGAAGATTCTGTGAGGGCTTTGCTTGTACATGGGCTGCACATAACTAACCAGTATAGGTTTTCTGAACCAGAAAATACTGAAGGTAGCCAAATTTGGGATTTCCGCATGGCTAGACTTAAGTTATTGCAATACAGTGACAGGTTGGAGACATATCTCGGGATAAATATGGGCAGGTTTTCTGTGCAGGAATATAGCAAATTTCGAGTCATGCCTATAAAAGAAGCTGCCGTAACACTTGCTGAGAGTGGGAAAATCGGAGCTTTAAACCTTCTGTTCAAGCGTCATCCTTATTCATTGGCTCCTTATGTATTGGAGATTTTAGGTTCTATCCCTGAAACAATTCCTGTGCAAACATATGGTCAACTTCTTCCTGGGAGGTGCCCTCCTACAAATATAGCAATGAGGGAAGTGGATTGGGTTGAATGTGAGAAAATGATAAGTTTTATCAACAAGACAACCAGGGATCATGAGATCAATATCCAAATCCAGACTGAGCCTATAGTCAAGCAGTGCCTAGGATCTGTTTGGCCATCCATTAATGAACTTTCAATGTGGTACAAGAAGAGAGCTAGGGATATTGACACTCTTAGTGGGCAGCTAGACAATTGTATCTCTTTGCTTGAGTTCGCTCATCACAAAGGTGTTCATGAGTTGCAGCAGTTCCATGAGGATGTCTCTTACCTGCACAAACTTATTTATTCTGATGAGAGTGGTGGTGAAGTAAATTTGAGTCTTGTCATGTGGGAAGAATTATCTGATTATGATAAATTTAAAGCGATGCTTAAAGGAGTTAAAGAAGAGAATATGATTGCAAGATTCCATGATATGGCAGTTCCATTTATGCGAGATAGGTTTCATTATACAACCTCTGTTTCTCAAGGTTGGTTGACAGATGACCATCATGCTGCAGATGGTAATAAGGACGAGTCATTTCTGGTTCGATGGCTGAAGGAAGCTGCTTATGAGAACAAATTGGACATTTGCTTGCTGGTAATAGAGGAAGGGTGCAAAGATTTCCAAAGTAGCAGCCTATTCAACGATGAGGTTGAAGCTATAGATTGTGCACTGCAGTGCATTTATCTGTGCACATCTACAGATAAATGGAGTACAATGGCAGCTATATTGTCAAAACTTCCACAAATGCAAGGTAGTGAAATATCTTTTGAGAGTCTGGAGAGAAGATTGAAACTGGCGGAAGGCCATATTGATGTTGGGAGACTCCTTGCATTTTATCAGGTACCAAAGTCGGTGAACTTTTTCTTAGAGTCTCATGCAGATGGAAAAGGTGTAAAGCAAATTCTTCGCCTTATAATTTCAAAGTTTATACGTCGGCAGCCTGGTCGTTCAGATACTGATTGGGCAACCATGTGGCGGGATATGCAATGCATTAGGGAAAAAGCATTTCCTTTTCTGGACTTGGAGTATATGTTAATGGAATTTTGCAGAGGACTGCTGAAAGCTGGGAAGTTTTCTCTTGCCAGGAATTATTTAAAGGGTACAAGTTCAGTTGCTTTGGCATCAGACAAGGCTGAGAACCTTGTCATTCAAGCTGCAAGGGAGTATTTTTTCTCAGCTTCAAGCCTTTCTTGTCCCGAAATCTGGAAGGCTAAGGAATGCCTCAATATATTTCCAAGCAGTGGAAACGTTAAAGTAGAGTCGGATATTATTGATGCACTTACATTTAGACTTCCCAGTCTAGGAGTGACTCTCTTACCCATGCAATTCAGGCAAATAAAAGATCCAATGGAGATTATCAAAATGGCAATCACAAGTCAAACTGGTGCATATATACATGTTGATGAACTCATTGAAATTGCCAAACTACTTGGATTGAGCTCTCCAGACAACATATCTTCTGTTCAGGAAGCTATTGCCAGAGAAGCTGCGGTTGCTGGTGATCTGCAATTGGCACTTGATCTCTGTCTTGTTTTGGCTAAGAAAGGACATGGTCATATTTGGGATTTATCTGCTGCAATAGCAAGGGGTCCTGCGCTTGAAAACATGGATATAAATTCTCGAAAGCAGCTACTGGGTTTTGCTTTAAGTAATTGTGATGAGGAATCAGTTAGTGAGTTGCTCTATGCATGGAAAGATCTAGATTTGCAAGGTCAGTGTGAAACATTAATGATGTTGAGTGAGACAAAATGTCCAGATTTCTCAATTCAAGGCTCCTCGATCATTACAGATTCAGCCCACAGTATACAAGATATAATCAAGCTAAAAGGTTGCTTGGAAATGGTTGAGGGAGCTAGTTGTGATGACCAAGAAGTTCATATTAGTAACATTAAGAATTCACTTTCTGCTGTTACTAAAAACCCGCCTATTGATAATGGTACCAATTTGGAATCACTTTTGAGAGAAAATGGAAAAGTTTTGTCTTTTGCTGCCATACAGCTTCCTTGGTTGCTTGAACTAAGCAGGAAAACAGAACACTGTAAGAAGCGAAATACTAATGTGATTCCTGGAAAGCAGTATGTCAGTGTAAGAACACAGGCTTTGGTAACCATTCTCTCCTGGTTGGCAAGACATGGTTTAGCTCCTACAGACAATGTGGTTGCCTCTCTTGCAAAATCTATTATTGAACCACCTGTTACTGAAGAGGAATATATAGCCAGCTGCTCCTTTCTCTTGAATCTGGTGGATCCATTGAATGGGGTTGAAGTGATAGAAGAGCAGCTTAGAACAAGGAAGGATTACCAAGAAATATCTAGCATCATGAATGTGGGGATGACATATAGCTTATTATATAGTTCTGCAATTGAGTGTGAAAGTCCTATGCAAAGGAGGGAGCTGCTATTGAGGAAGTTTAAAGAGAAGCACACACAATCTAGTACTGATGAATTTGACAAATTTGACAAGGTAAAGTCTACCTTTTGGAGAGAATGGAAGCTGAAATTAGAAGACCAAAAGCGCGTTGCAGATCACTGTAGAGCATTAGAGAAAATAATTCCTGGTGTTGACACAACACGCTTTTTGTCTCGAGACTTTAATTACATTGGGAGTGTTGTTCTTCCCCTGATCGATTCTGTAAAGTTAGAGAAAAAGCACATTTTAAAGGACATTCTGAAATTAGCTGATGGCTATGGCTTGAATCGTGCAGAGGTCTTTTTACGATATCTAAGTTCTGTCCTTGTCTCTGAGGTATGGACAAATGATGATATCACAGCTGAAATTTCTGAATTTAGAGGAGAAATTGTTGACCAAGCTGTTGAAACCATCAAAGCTATCTCCTCTGCTGTGTACCCTGCAGTCGATGGATGCAACAAGTTGCGCCTTGCTTACCTGTTTGGTCTCCTTTCTGACTGCTACTTGCGACTGGAAGAAACCGGTAAAAAATTACCAATAATACATCCTGATCAAGCACATGTCTCTGGTTTTGGATTATCTCGTTTTTACAGGTTGGTGGAGCAAGAGTGCGTAAGAGTTGCCTTTATTGTGAACCTGAACTTTAAAAATATTGCTGGATTAGGTGGTTTGAACTTTAAGTGCTTAAGCTCTGAAGTCTACATGCATGTCTATGATAGTAGCTTGGAAGCTTTGTCAAAGATGATACAGACTTTTACCAGCATATATTCTGATCCGTTGCCAGAGGGTCTCATAACATGGCAGGATGTCTACAAACATTATATATGGAGTTTGCTGACAGCTTTAGAGACTAAAGCTGGAACAGCTTCCATCATCAAAAGCACTGAAACTCTTCAAGGTTTTGTATGTCAACTTGAGCAGAGCTATGAATATTGCAGAAGGTATATCAGACTCTTGGCACGTGTAGATTCTTTGAACATTATGAAGCGGTATTTCACAATAATCCTACCTCTTTTTGGTTCTTATGGGGGTCTACCAGATAACTCGGCATTGCAAGAATGTCTTATAATTCTCTTGAACTTTTGGATAAGATTGATTGATGAGATGAAGGAGATTGCATCCCATGAGGATGCTAGACCAAGCCTCAAGCTCAATCTAGATTGCTTATTGCATTGTCTAAAAGTTTGTATGAGGTTGGTAATGGAGGACAGTGTCTCCCCTAGTCAGGGGTGGGGCACACTTGTCAGCTTTATCAAGCATGGTTTAATTGGTCAATCTGCTTCTGAACTTTATTTATTCTGTAGAGCGATGATTTTTTCTGGTTGTGGATTTGGACCTGTGGCTGAAGTATTTTCTGAAGCAGTAATTCGGGGTCCAACTGGTTTCACGTTGGTGGGAGACAGAGAAATCCAGGAACTCCCCCATCTCTACTTGAATATCTTGGAACATATTTTACAGGATGTGGTCATTAGTGAATCCCAGGAATACCAGAATTTATACCAGCTTTTGTCCTCTTTGAGTAAATTAGAAGGAGATTTGGAGGATTTGGATAAGGTCAGGAATATAATTTGGGAAAGAATGGCTGAGTTCTCTGATAACCCGCAGCTTCCCGGTTCCATTCGAGTGTTTGCTTTAGAGCTGATGCAATACCTGACAGGAAAAAATATAAAGGGTTTCTCTGCTGGGATACAATCTAGTGTTATACCGTGGGAAGGATGGGATGAGGTGCACTTTACAAATAAAAAAAGTGAAACTACTGCCAATCAGGGTTTGGCAGATCATAATGATAGATCGAACAGGTTTACAAGTACATTAGTTGCCCTCAAATCATCTCAGCTTGTGGCAAATATCTCACCCACCATGGAAATTACCCCAGATGATCTCTTGAATCTGGAGACAGCTGTTTCTTGCTTCCTAAAGTTGTGTGATGTTGCTCAAAATTATTCCCATGTTGAATCTCTGCTTGCTGTGTTGGGAGAATGGGAAGGATTTTTCTTGGTGAGGGACGATAAGGAAGCCTCTGTAGAAGTATCTGATGCTGGAAATGACTGGACTGAAGATAACTGGGACGAAGGATGGGAGAGTTTCCAGGAAGTAGGGCCTTCTGAGAAAGAAAACGAGAGTTCTATTTCCATTAACCCACTGCATGTGTGTTGGTTGGCGATCTTCAAGAAACTCATAACGCTCTCCCATTTTAAAGTTGTCCTAAGACTGATTGACCGGTCCTTAATTAAATCTGGTGGGATATTGCTTGATGAAGAAGGTGCAAAGAGCTTGAGCCAGATCGTTCTTGAAATAGATTGCTTCATGGCTTTGAAGTTGGTGCTATTACTGCCTTTCAAACCACTACAGTTGCAGTGTTTGGCTGCTGTTGAGGACAAGTTGAAGCAAGGAGGCATCTCTGACACGATTGGTGGAGACATCGAGTTTTTAATGCTTGTATTATTCTCTGGTGTCGTGTCCTCCATCATTTCTAATTCTTCCTATGGTAACACTTTCTCTTATATCTGCTATTTGGTTGGGAACTTATCCCACAAGTGTCAAGCAGCTCAGTTACAAAATCAGAGGCAGAAAGGAAACAGTGCATTGGGAGAAGATGAGAGATCCTTATTGCTCTTTCGAAGAGTACTCTTCCCCTGTTTTATTTCAGAGCTTGTGAAGGGAGATCAGCAGCTTCTAGCAGGACTCGTTGTTACGAAATTTATGCACACAAATGCATCACTTAGCCTTGTTAATATTGCCGAGGCAAGTCTCGGAAGATTTCTGGAGGTGCAGCTTAATGTTCTACATGACAAATCCACTCCGGATGAGACGCATTCACAAGATGCATTGCAGAACACTATTTCCAGTTTGAGAGGCAAGATGGAAAATCTGATCCGACATGCATCGTCATTGCTTTCAACTAACGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2414

Amino Acids

272.1

Weight (kDa)

5.44

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_KNTC1_1st PF24520 446 - 667 6.8e-10 KNTC1 first ARM-repeats domain
Sec39 PF08314 584 - 891 1.8e-12 Secretory pathway protein Sec39
Sec39 PF08314 938 - 1120 2e-14 Secretory pathway protein Sec39
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1409, 2834, 5396
AasI GACNNNNNNGTC 1 cut(s) 3216
Acc36I ACCTGC 2 cut(s) 1686, 2214
Acc65I GGTACC 2 cut(s) 2761, 3857
AccB1I GGYRCC 3 cut(s) 1902, 2761, 3857
AccB7I CCANNNNNTGG 3 cut(s) 2350, 3161, 4175
AccBSI CCGCTC 1 cut(s) 635
AccI GTMKAC 5 cut(s) 3724, 4391, 5028, 5139, 5362
AccII CGCG 1 cut(s) 4437
AccIII TCCGGA 1 cut(s) 7132
AclI AACGTT 2 cut(s) 3168, 7236
AcoI YGGCCR 1 cut(s) 2051
AcuI CTGAAG 7 cut(s) 1623, 2492, 4140, 5043, 5694, 5706, 6405
AcvI CACGTG 1 cut(s) 5291
AflII CTTAAG 2 cut(s) 1640, 5014
AflIII ACRYGT 3 cut(s) 3316, 4888, 5290
AgeI ACCGGT 2 cut(s) 4850, 6549
AhdI GACNNNNNGTC 1 cut(s) 3669
AleI CACNNNNGTG 3 cut(s) 2163, 2593, 5720
AloI GAACNNNNNNTCC 2 cut(s) 7157, 7189
Alw21I GWGCWC 4 cut(s) 2590, 2612, 3362, 6060
Alw44I GTGCAC 3 cut(s) 2586, 2608, 6056
AlwNI CAGNNNCTG 2 cut(s) 2876, 3553
Ama87I CYCGRG 2 cut(s) 1679, 4503
Aor13HI TCCGGA 1 cut(s) 7132
AoxI GGCC 4 cut(s) 1057, 2051, 2722, 6428
ApaLI GTGCAC 3 cut(s) 2586, 2608, 6056
ArsI GACNNNNNNTTYG 8 cut(s) 952, 956, 984, 988, 1713, 1745, 1867, 1899
AseI ATTAAT 2 cut(s) 2061, 3647
AsiGI ACCGGT 2 cut(s) 4850, 6549
Asp700I GAANNNNTTC 4 cut(s) 1863, 2780, 5194, 5220
Asp718I GGTACC 2 cut(s) 2761, 3857
AspA2I CCTAGG 1 cut(s) 2038
AspLEI GCGC 3 cut(s) 3517, 4437, 4797
AspS9I GGNCC 7 cut(s) 1023, 1517, 3509, 5663, 5702, 6428, 6552
AsuC2I CCSGG 1 cut(s) 5940
AsuHPI GGTGA 7 cut(s) 233, 831, 2252, 2785, 3431, 6174, 6340
AsuII TTCGAA 2 cut(s) 1342, 6949
AsuNHI GCTAGC 1 cut(s) 814
AvaI CYCGRG 2 cut(s) 1679, 4503
AvaII GGWCC 6 cut(s) 1023, 1517, 3509, 5663, 5702, 6552
AvrII CCTAGG 1 cut(s) 2038
BaeGI GKGCMC 5 cut(s) 1907, 2590, 2612, 5567, 6060
BaeI ACNNNNGTAYC 4 cut(s) 2116, 2149, 2753, 2786
BalI TGGCCA 1 cut(s) 2053
BamHI GGATCC 2 cut(s) 568, 4165
BanI GGYRCC 3 cut(s) 1902, 2761, 3857
BanII GRGCYC 1 cut(s) 3362
BbrPI CACGTG 1 cut(s) 5291
BbsI GAAGAC 1 cut(s) 4431
Bbv12I GWGCWC 4 cut(s) 2590, 2612, 3362, 6060
BceAI ACGGC 2 cut(s) 56, 1736
BcgI CGANNNNNNTGC 6 cut(s) 2807, 2841, 2846, 2880, 7015, 7049
BciVI GTATCC 1 cut(s) 6009
BclI TGATCA 1 cut(s) 4879
BcnI CCSGG 1 cut(s) 5940
BfrI CTTAAG 2 cut(s) 1640, 5014
BfuAI ACCTGC 2 cut(s) 1686, 2214
BfuI GTATCC 1 cut(s) 6009
BglII AGATCT 3 cut(s) 868, 1196, 3616
BlnI CCTAGG 1 cut(s) 2038
BmcAI AGTACT 2 cut(s) 4357, 6957
Bme18I GGWCC 6 cut(s) 1023, 1517, 3509, 5663, 5702, 6552
BmeRI GACNNNNNGTC 1 cut(s) 3669
BmeT110I CYCGRG 2 cut(s) 1679, 4503
BmgT120I GGNCC 7 cut(s) 1023, 1517, 3509, 5663, 5702, 6428, 6552
BmrI ACTGGG 3 cut(s) 3210, 3563, 6403
BmtI GCTAGC 1 cut(s) 818
BmuI ACTGGG 3 cut(s) 3210, 3563, 6403
BpiI GAAGAC 1 cut(s) 4431
BplI GAGNNNNNCTC 6 cut(s) 1891, 1923, 2183, 2215, 3216, 3248
BpmI CTGGAG 7 cut(s) 530, 770, 1306, 2717, 3348, 6242, 7115
Bpu10I CCTNAGC 1 cut(s) 3132
Bpu14I TTCGAA 2 cut(s) 1342, 6949
BpuEI CTTGAG 5 cut(s) 2165, 2385, 5264, 5459, 6625
BpuMI CCSGG 1 cut(s) 5940
Bsa29I ATCGAT 1 cut(s) 4545
BsaAI YACGTR 2 cut(s) 889, 5291
BsaBI GATNNNNATC 3 cut(s) 196, 2000, 2421
BsaI GGTCTC 2 cut(s) 4820, 5123
BsaWI WCCGGW 3 cut(s) 4850, 6549, 7132
Bse118I RCCGGY 2 cut(s) 4850, 6549
Bse3DI GCAATG 5 cut(s) 1929, 2912, 5378, 7157, 7220
Bse8I GATNNNNATC 3 cut(s) 196, 2000, 2421
BseAI TCCGGA 1 cut(s) 7132
BseCI ATCGAT 1 cut(s) 4545
BseJI GATNNNNATC 3 cut(s) 196, 2000, 2421
BseMI GCAATG 5 cut(s) 1929, 2912, 5378, 7157, 7220
BseRI GAGGAG 5 cut(s) 66, 1115, 3685, 4725, 4744
BseSI GKGCMC 5 cut(s) 1907, 2590, 2612, 5567, 6060
BseYI CCCAGC 2 cut(s) 2984, 6011
BsgI GTGCAG 6 cut(s) 576, 1544, 1727, 2192, 4641, 7121
Bsh1236I CGCG 1 cut(s) 4437
BshFI GGCC 4 cut(s) 1059, 2053, 2724, 6430
BshNI GGYRCC 3 cut(s) 1902, 2761, 3857
BshTI ACCGGT 2 cut(s) 4850, 6549
BshVI ATCGAT 1 cut(s) 4545
BsiHKAI GWGCWC 4 cut(s) 2590, 2612, 3362, 6060
BsiHKCI CYCGRG 2 cut(s) 1679, 4503
BsiSI CCGG 4 cut(s) 4851, 5940, 6550, 7133
BslFI GGGAC 5 cut(s) 310, 639, 3099, 6347, 6410
BsmBI CGTCTC 2 cut(s) 26, 7133
BsmFI GGGAC 5 cut(s) 310, 639, 3099, 6347, 6410
BsmI GAATGC 2 cut(s) 3143, 7144
BsnI GGCC 4 cut(s) 1059, 2053, 2724, 6430
Bso31I GGTCTC 2 cut(s) 4820, 5123
BsoBI CYCGRG 2 cut(s) 1679, 4503
Bsp119I TTCGAA 2 cut(s) 1342, 6949
Bsp1286I GDGCHC 6 cut(s) 1907, 2590, 2612, 3362, 5567, 6060
Bsp13I TCCGGA 1 cut(s) 7132
Bsp1407I TGTACA 2 cut(s) 493, 1549
Bsp19I CCATGG 1 cut(s) 6189
BspANI GGCC 4 cut(s) 1059, 2053, 2724, 6430
BspDI ATCGAT 1 cut(s) 4545
BspEI TCCGGA 1 cut(s) 7132
BspFNI CGCG 1 cut(s) 4437
BspHI TCATGA 4 cut(s) 352, 1990, 2170, 4239
BspMAI CTGCAG 3 cut(s) 2434, 2595, 4774
BspMI ACCTGC 2 cut(s) 1686, 2214
BspOI GCTAGC 1 cut(s) 818
BspQI GCTCTTC 1 cut(s) 4188
BspT104I TTCGAA 2 cut(s) 1342, 6949
BspT107I GGYRCC 3 cut(s) 1902, 2761, 3857
BspTI CTTAAG 2 cut(s) 1640, 5014
BspTNI GGTCTC 2 cut(s) 4820, 5123
BsrBI CCGCTC 1 cut(s) 635
BsrDI GCAATG 5 cut(s) 1929, 2912, 5378, 7157, 7220
BsrFI RCCGGY 2 cut(s) 4850, 6549
BsrGI TGTACA 2 cut(s) 493, 1549
BssAI RCCGGY 2 cut(s) 4850, 6549
BssNAI GTATAC 1 cut(s) 3725
BssT1I CCWWGG 5 cut(s) 1365, 1435, 2038, 3923, 6189
Bst1107I GTATAC 1 cut(s) 3725
Bst6I CTCTTC 8 cut(s) 1503, 2081, 2316, 4116, 4188, 5226, 6946, 6965
BstAFI CTTAAG 2 cut(s) 1640, 5014
BstAUI TGTACA 2 cut(s) 493, 1549
BstBAI YACGTR 2 cut(s) 889, 5291
BstBI TTCGAA 2 cut(s) 1342, 6949
BstC8I GCNNGC 5 cut(s) 681, 816, 2510, 4138, 6294
BstDSI CCRYGG 2 cut(s) 6035, 6189
BstEII GGTNACC 1 cut(s) 4024
BstFNI CGCG 1 cut(s) 4437
BstHHI GCGC 3 cut(s) 3517, 4437, 4797
BstNSI RCATGY 8 cut(s) 230, 936, 3320, 4892, 5035, 5039, 6479, 7214
BstPI GGTNACC 1 cut(s) 4024
BstSLI GKGCMC 5 cut(s) 1907, 2590, 2612, 5567, 6060
BstUI CGCG 1 cut(s) 4437
BstV2I GAAGAC 1 cut(s) 4431
BstX2I RGATCY 9 cut(s) 568, 868, 1196, 1310, 2042, 3262, 3616, 4165, 6932
BstXI CCANNNNNNTGG 1 cut(s) 856
BstYI RGATCY 9 cut(s) 568, 868, 1196, 1310, 2042, 3262, 3616, 4165, 6932
BstZ17I GTATAC 1 cut(s) 3725
Bsu15I ATCGAT 1 cut(s) 4545
BsuI GTATCC 1 cut(s) 6009
BsuRI GGCC 4 cut(s) 1059, 2053, 2724, 6430
BsuTUI ATCGAT 1 cut(s) 4545
BtgI CCRYGG 2 cut(s) 6035, 6189
BtgZI GCGATG 2 cut(s) 2315, 5651
BtsI GCAGTG 7 cut(s) 116, 2039, 2588, 2600, 3166, 6470, 6692
BveI ACCTGC 2 cut(s) 1686, 2214
Cac8I GCNNGC 5 cut(s) 681, 816, 2510, 4138, 6294
CaiI CAGNNNCTG 2 cut(s) 2876, 3553
CciI TCATGA 4 cut(s) 352, 1990, 2170, 4239
CfoI GCGC 3 cut(s) 3517, 4437, 4797
Cfr10I RCCGGY 2 cut(s) 4850, 6549
Cfr13I GGNCC 7 cut(s) 1023, 1517, 3509, 5663, 5702, 6428, 6552
ClaI ATCGAT 1 cut(s) 4545
CseI GACGC 2 cut(s) 1793, 7150
CsiI ACCWGGT 1 cut(s) 338
CspAI ACCGGT 2 cut(s) 4850, 6549
CspCI CAANNNNNGTGG 2 cut(s) 6663, 6698
DraI TTTAAA 7 cut(s) 1788, 2296, 3015, 4333, 4578, 4975, 6526
DrdI GACNNNNNNGTC 1 cut(s) 3216
DriI GACNNNNNGTC 1 cut(s) 3669
DseDI GACNNNNNNGTC 1 cut(s) 3216
EaeI YGGCCR 1 cut(s) 2051
Eam1104I CTCTTC 8 cut(s) 1503, 2081, 2316, 4116, 4188, 5226, 6946, 6965
Eam1105I GACNNNNNGTC 1 cut(s) 3669
EarI CTCTTC 8 cut(s) 1503, 2081, 2316, 4116, 4188, 5226, 6946, 6965
EciI GGCGGA 1 cut(s) 2732
Ecl136II GAGCTC 1 cut(s) 3360
Eco130I CCWWGG 5 cut(s) 1365, 1435, 2038, 3923, 6189
Eco24I GRGCYC 1 cut(s) 3362
Eco31I GGTCTC 2 cut(s) 4820, 5123
Eco32I GATATC 2 cut(s) 4640, 4684
Eco47I GGWCC 6 cut(s) 1023, 1517, 3509, 5663, 5702, 6552
Eco53kI GAGCTC 1 cut(s) 3360
Eco57I CTGAAG 7 cut(s) 1623, 2492, 4140, 5043, 5694, 5706, 6405
Eco72I CACGTG 1 cut(s) 5291
Eco88I CYCGRG 2 cut(s) 1679, 4503
Eco91I GGTNACC 1 cut(s) 4024
EcoICRI GAGCTC 1 cut(s) 3360
EcoO109I RGGNCCY 2 cut(s) 3509, 6428
EcoO65I GGTNACC 1 cut(s) 4024
EcoRI GAATTC 1 cut(s) 3814
EcoRV GATATC 2 cut(s) 4640, 4684
EcoT14I CCWWGG 5 cut(s) 1365, 1435, 2038, 3923, 6189
EcoT22I ATGCAT 6 cut(s) 2912, 3610, 5037, 7048, 7159, 7216
EcoT38I GRGCYC 1 cut(s) 3362
ErhI CCWWGG 5 cut(s) 1365, 1435, 2038, 3923, 6189
Esp3I CGTCTC 2 cut(s) 26, 7133
FaqI GGGAC 5 cut(s) 310, 639, 3099, 6347, 6410
FauI CCCGC 3 cut(s) 2889, 3849, 5937
FauNDI CATATG 1 cut(s) 1879
FbaI TGATCA 1 cut(s) 4879
FblI GTMKAC 5 cut(s) 3724, 4391, 5028, 5139, 5362
FriOI GRGCYC 1 cut(s) 3362
GlaI GCGC 3 cut(s) 3516, 4436, 4796
GsaI CCCAGC 2 cut(s) 2988, 6015
GsuI CTGGAG 7 cut(s) 530, 770, 1306, 2717, 3348, 6242, 7115
HaeIII GGCC 4 cut(s) 1059, 2053, 2724, 6430
HapII CCGG 4 cut(s) 4851, 5940, 6550, 7133
HgaI GACGC 2 cut(s) 1793, 7150
HhaI GCGC 3 cut(s) 3517, 4437, 4797
Hin6I GCGC 3 cut(s) 3515, 4435, 4795
HinP1I GCGC 3 cut(s) 3515, 4435, 4795
HincII GTYRAC 8 cut(s) 143, 655, 1009, 1886, 2412, 4483, 4723, 5240
HindII GTYRAC 8 cut(s) 143, 655, 1009, 1886, 2412, 4483, 4723, 5240
HindIII AAGCTT 2 cut(s) 466, 5058
HpaII CCGG 4 cut(s) 4851, 5940, 6550, 7133
HphI GGTGA 7 cut(s) 233, 831, 2252, 2785, 3431, 6174, 6340
Hpy99I CGWCG 1 cut(s) 2856
HpyCH4IV ACGT 6 cut(s) 888, 2851, 3168, 5290, 5717, 7236
HpySE526I ACGT 6 cut(s) 888, 2851, 3168, 5290, 5717, 7236
HspAI GCGC 3 cut(s) 3515, 4435, 4795
Kpn2I TCCGGA 1 cut(s) 7132
KpnI GGTACC 2 cut(s) 2765, 3861
Ksp22I TGATCA 1 cut(s) 4879
LguI GCTCTTC 1 cut(s) 4188
MabI ACCWGGT 1 cut(s) 338
MaeII ACGT 6 cut(s) 888, 2851, 3168, 5290, 5717, 7236
MbiI CCGCTC 1 cut(s) 635
MfeI CAATTG 3 cut(s) 2128, 3428, 4281
MflI RGATCY 9 cut(s) 568, 868, 1196, 1310, 2042, 3262, 3616, 4165, 6932
MhlI GDGCHC 6 cut(s) 1907, 2590, 2612, 3362, 5567, 6060
MlsI TGGCCA 1 cut(s) 2053
MluNI TGGCCA 1 cut(s) 2053
MmeI TCCRAC 7 cut(s) 1050, 1455, 1495, 1647, 3162, 5729, 7231
Mox20I TGGCCA 1 cut(s) 2053
Mph1103I ATGCAT 6 cut(s) 2912, 3610, 5037, 7048, 7159, 7216
MroI TCCGGA 1 cut(s) 7132
MroXI GAANNNNTTC 4 cut(s) 1863, 2780, 5194, 5220
MscI TGGCCA 1 cut(s) 2053
Msp20I TGGCCA 1 cut(s) 2053
MspA1I CMGCKG 3 cut(s) 4140, 4691, 6230
MspCI CTTAAG 2 cut(s) 1640, 5014
MspI CCGG 4 cut(s) 4851, 5940, 6550, 7133
MunI CAATTG 3 cut(s) 2128, 3428, 4281
Mva1269I GAATGC 2 cut(s) 3143, 7144
MvnI CGCG 1 cut(s) 4437
NciI CCSGG 1 cut(s) 5940
NcoI CCATGG 1 cut(s) 6189
NdeI CATATG 1 cut(s) 1879
NheI GCTAGC 1 cut(s) 814
NmeAIII GCCGAG 2 cut(s) 5354, 7096
NmuCI GTSAC 6 cut(s) 688, 951, 958, 1063, 1658, 3226
NsiI ATGCAT 6 cut(s) 2912, 3610, 5037, 7048, 7159, 7216
NspI RCATGY 8 cut(s) 230, 936, 3320, 4892, 5035, 5039, 6479, 7214
NspV TTCGAA 2 cut(s) 1342, 6949
OliI CACNNNNGTG 3 cut(s) 2163, 2593, 5720
PacI TTAATTAA 1 cut(s) 6561
PaeR7I CTCGAG 1 cut(s) 4503
PagI TCATGA 4 cut(s) 352, 1990, 2170, 4239
PciI ACATGT 2 cut(s) 3316, 4888
PciSI GCTCTTC 1 cut(s) 4188
PctI GAATGC 2 cut(s) 3143, 7144
PdmI GAANNNNTTC 4 cut(s) 1863, 2780, 5194, 5220
PflFI GACNNNGTC 2 cut(s) 3471, 5540
PflMI CCANNNNNTGG 3 cut(s) 2350, 3161, 4175
PfoI TCCNGGA 3 cut(s) 3985, 5739, 6417
PinAI ACCGGT 2 cut(s) 4850, 6549
PmaCI CACGTG 1 cut(s) 5291
PmlI CACGTG 1 cut(s) 5291
Ppu21I YACGTR 2 cut(s) 889, 5291
PpuMI RGGWCCY 1 cut(s) 3509
PscI ACATGT 2 cut(s) 3316, 4888
PshBI ATTAAT 2 cut(s) 2061, 3647
PsiI TTATAA 3 cut(s) 1409, 2834, 5396
Psp124BI GAGCTC 1 cut(s) 3362
Psp1406I AACGTT 2 cut(s) 3168, 7236
Psp5II RGGWCCY 1 cut(s) 3509
PspCI CACGTG 1 cut(s) 5291
PspEI GGTNACC 1 cut(s) 4024
PspFI CCCAGC 2 cut(s) 2984, 6011
PspPI GGNCC 7 cut(s) 1023, 1517, 3509, 5663, 5702, 6428, 6552
PspPPI RGGWCCY 1 cut(s) 3509
PsrI GAACNNNNNNTAC 2 cut(s) 5766, 5798
PstI CTGCAG 3 cut(s) 2434, 2595, 4774
PstNI CAGNNNCTG 2 cut(s) 2876, 3553
PsuI RGATCY 9 cut(s) 568, 868, 1196, 1310, 2042, 3262, 3616, 4165, 6932
PsyI GACNNNGTC 2 cut(s) 3471, 5540
PvuII CAGCTG 3 cut(s) 4140, 4691, 6230
SacI GAGCTC 1 cut(s) 3362
SapI GCTCTTC 1 cut(s) 4188
Sau96I GGNCC 7 cut(s) 1023, 1517, 3509, 5663, 5702, 6428, 6552
ScaI AGTACT 2 cut(s) 4357, 6957
SduI GDGCHC 6 cut(s) 1907, 2590, 2612, 3362, 5567, 6060
SexAI ACCWGGT 1 cut(s) 338
Sfr274I CTCGAG 1 cut(s) 4503
SfuI TTCGAA 2 cut(s) 1342, 6949
SinI GGWCC 6 cut(s) 1023, 1517, 3509, 5663, 5702, 6552
SlaI CTCGAG 1 cut(s) 4503
SmlI CTYRAG 8 cut(s) 1640, 2144, 2400, 4503, 5014, 5243, 5474, 6604
SmoI CTYRAG 8 cut(s) 1640, 2144, 2400, 4503, 5014, 5243, 5474, 6604
SspI AATATT 4 cut(s) 1333, 4981, 5261, 7066
SstI GAGCTC 1 cut(s) 3362
StyI CCWWGG 5 cut(s) 1365, 1435, 2038, 3923, 6189
TaiI ACGT 6 cut(s) 891, 2854, 3171, 5293, 5720, 7239
TatI WGTACW 8 cut(s) 493, 1454, 1489, 1549, 2630, 4355, 6137, 6955
TauI GCSGC 1 cut(s) 312
TseFI GTSAC 6 cut(s) 688, 951, 958, 1063, 1658, 3226
Tsp45I GTSAC 6 cut(s) 688, 951, 958, 1063, 1658, 3226
TspGWI ACGGA 2 cut(s) 1303, 5094
Tth111I GACNNNGTC 2 cut(s) 3471, 5540
Van91I CCANNNNNTGG 3 cut(s) 2350, 3161, 4175
Vha464I CTTAAG 2 cut(s) 1640, 5014
VneI GTGCAC 3 cut(s) 2586, 2608, 6056
VpaK11BI GGWCC 6 cut(s) 1023, 1517, 3509, 5663, 5702, 6552
VspI ATTAAT 2 cut(s) 2061, 3647
XbaI TCTAGA 2 cut(s) 3619, 5485
XceI RCATGY 8 cut(s) 230, 936, 3320, 4892, 5035, 5039, 6479, 7214
XcmI CCANNNNNNNNNTGG 2 cut(s) 2732, 6097
XhoI CTCGAG 1 cut(s) 4503
XmaJI CCTAGG 1 cut(s) 2038
XmiI GTMKAC 5 cut(s) 3724, 4391, 5028, 5139, 5362
XmnI GAANNNNTTC 4 cut(s) 1863, 2780, 5194, 5220
ZrmI AGTACT 2 cut(s) 4357, 6957
Zsp2I ATGCAT 6 cut(s) 2912, 3610, 5037, 7048, 7159, 7216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.