Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018698

Physical Location & Seq

Genomic Coordinates Reverse (-)

645350 .. 646072

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCTGGACTGACTGCTTATGTAGGTTTTTATGAGGTTTGCTCACCTAAGAAAGGAGAGACGGTCTACATCTCAGCAGTATCTGGAGCAGTCGGTCAACTTGTTGGCCAATTTGCCAAACTCATGGGTTGCTATGTCATTAATGGAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTGAAGAACGAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAACCTAACTTGGATCCAGCTCTAAAAAGGTACTTTCCTGAAGGTATTGATATTTACTTTGAAAATGTTGGGGGAAAGATGCTGTTCCGGGGGCGAATTGCAGTTTGTGGGATGATATCCCAATATAACCTTGAGAAGCCTGAAGGTGTACACAATCTAATGTTAAGATGTAGAATTGAAGGCCTCGAAAGTGTTCCATTGGCCCTGATTGGACTCTTTACAGGTCGCAATGTCGGAAAGCAGGTTGTTGTTGTTTCCCGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

162

Amino Acids

17.8

Weight (kDa)

6.61

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	30 - 102	2.5e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018698)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0007000 Rorug02G0007100 Rorug02G0007200 Rorug02G0007300 Rorug04G0004700 Rorug04G0004800
rosa_samantha	Rh2BG052000 Rh2CG054100 Rh2DG053100 Rh6AG060600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	230, 243
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	3 cut(s)	200, 282, 384
AfaI	GTAC	2 cut(s)	254, 372
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	211, 284, 401
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	230, 243
AlwNI	CAGNNNCTG	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	3 cut(s)	106, 403, 423
AseI	ATTAAT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	6, 311
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	6, 311
BmsI	GCATC	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	108, 405, 425
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BsnI	GGCC	3 cut(s)	108, 405, 425
BsoBI	CYCGRG	1 cut(s)	480
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	3 cut(s)	108, 405, 425
BspCNI	CTCAG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	230, 243
BsrDI	GCAATG	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	48, 73
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	2 cut(s)	4, 309
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	108, 405, 425
BtsCI	GGATG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	253, 371
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	6 cut(s)	108, 206, 242, 361, 405, 425
CviKI_1	RGCY	6 cut(s)	108, 206, 242, 361, 405, 425
CviQI	GTAC	2 cut(s)	253, 371
DdeI	CTNAG	2 cut(s)	48, 73
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	339
Eco57I	CTGAAG	3 cut(s)	200, 282, 384
Eco88I	CYCGRG	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	127
FaiI	YATR	6 cut(s)	21, 33, 125, 135, 216, 348
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	66
FokI	GGATG	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	108, 405, 425
HapII	CCGG	1 cut(s)	310
Hin1II	CATG	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	4 cut(s)	67, 98, 371, 373
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	3 cut(s)	84, 260, 480
Hpy8I	GTNNAC	4 cut(s)	67, 98, 371, 373
HpyAV	CCTTC	3 cut(s)	257, 359, 395
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	48, 73
Hsp92II	CATG	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	86
LweI	GCATC	1 cut(s)	291
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	193, 233
MflI	RGATCY	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	4 cut(s)	110, 211, 318, 396
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	3 cut(s)	28, 196, 416
Mox20I	TGGCCA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	141, 386
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	6, 311
MvaI	CCWGG	1 cut(s)	6
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	414
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PshBI	ATTAAT	1 cut(s)	141
PsiI	TTATAA	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	254, 372
RsaNI	GTAC	2 cut(s)	253, 371
SaqAI	TTAA	2 cut(s)	141, 386
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	2 cut(s)	6, 311
SfaNI	GCATC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	110, 211, 318, 396
SseBI	AGGCCT	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	4, 309
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	408
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	110, 211, 318, 396
TatI	WGTACW	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	141, 386
Tru9I	TTAA	2 cut(s)	141, 386
VspI	ATTAAT	1 cut(s)	141
XagI	CCTNNNNNAGG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.