Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018698

Physical Location & Seq

Genomic Coordinates Reverse (-)

646107 .. 646539

Gene Structure 433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCAACTGACCACTAGTACAGCCACACTGAAGCTCCCACAAGGTTCCACTGGTGTTCTGGTCAAGAACCTCTGCTTGTCCTGCGATCCTTATACTAAAGTCCATATGACCAAGGCTAGCTCTGATACTCCTTCTTATATCAAAACCTTCACTCCTGGTTCGCCTATGACTGGATTTGGAGTGGCTAAAGTCTTGGAATCTGGGGATGCAAACTTTAAGCTAGGCGACTTGGTTTGGGGAATCACTGGCTGGGAAGAATATAGTCTCATAAATGCAACAGATCGAATCTCTGTTCAAGATTCACAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

103

Amino Acids

11.09

Weight (kDa)

6.02

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	15 - 94	2.4e-19	N-terminal domain of oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018698)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0007000 Rorug02G0007100 Rorug02G0007200 Rorug02G0007300 Rorug04G0004700 Rorug04G0004800
rosa_samantha	Rh2BG052000 Rh2CG054100 Rh2DG053100 Rh6AG060600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	34, 120, 220
AluI	AGCT	3 cut(s)	34, 120, 220
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	269
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 117, 221
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	55, 175, 250
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	55, 175, 250
BseYI	CCCAGC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	85, 280
BspLI	GGNNCC	1 cut(s)	46
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	55, 175, 250
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	85, 280
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	88, 283
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	85, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	4 cut(s)	26, 48, 243, 307
Cac8I	GCNNGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	18
CviJI	RGCY	7 cut(s)	23, 34, 116, 120, 185, 220, 249
CviKI_1	RGCY	7 cut(s)	23, 34, 116, 120, 185, 220, 249
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	2 cut(s)	87, 282
DpnII	GATC	2 cut(s)	85, 280
Eco130I	CCWWGG	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	7 cut(s)	93, 105, 107, 138, 167, 261, 269
FauNDI	CATATG	1 cut(s)	105
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	3 cut(s)	15, 117, 221
GsaI	CCCAGC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	197, 240, 285, 299
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	64, 296
HpyAV	CCTTC	2 cut(s)	141, 157
HpyCH4V	TGCA	3 cut(s)	4, 209, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	85, 280
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	9 cut(s)	36, 44, 94, 141, 156, 168, 186, 231, 235
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	15, 117, 221
MalI	GATC	2 cut(s)	87, 282
MboI	GATC	2 cut(s)	85, 280
MboII	GAAGA	1 cut(s)	266
MnlI	CCTC	1 cut(s)	80
MseI	TTAA	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	2 cut(s)	85, 280
NheI	GCTAGC	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	46
PfeI	GAWTC	4 cut(s)	197, 240, 285, 299
Psp6I	CCWGG	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	85, 280
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	6 cut(s)	36, 46, 72, 122, 149, 222
SfaNI	GCATC	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	14
SspMI	CTAG	3 cut(s)	15, 117, 221
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	111
TaqI	TCGA	1 cut(s)	283
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	4 cut(s)	197, 240, 285, 299
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	3 cut(s)	33, 55, 250
TspRI	CASTG	3 cut(s)	33, 55, 250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	3 cut(s)	15, 117, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.