Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018698

Physical Location & Seq

Genomic Coordinates Forward (+)

3682724 .. 3699795

Gene Structure 17072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCTATGTCTCCACTACTTGACGCCGCGGCTCGTCGTCATTCTTCAGTCCTCTTATTCGAGACTTGGACGCCACGCCAAATCAGCAATCGCAATCGCCGAGATATACTATCCTGGCACGCAATGCAGCAAAACGAAGAAGTTATTAGGAGATACTCAACTTTCTAAAAATTTTGCGGTGAAGGAATTTGGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGATTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGAAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTCTCTCTGCGATCCATTGAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAAAGAAGGTCTTGAACGAGCTCATGGAAAGGAATCTTCTCGTGTTAGACTCCTTCAGGCGGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGTTGTTCACCCAGCTTCAGGTTTGAAAAGGAGCTTGCCGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGGTTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTATGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

374

Amino Acids

40.74

Weight (kDa)

5.4

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018698)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0007000 Rorug02G0007100 Rorug02G0007200 Rorug02G0007300 Rorug04G0004700 Rorug04G0004800
rosa_samantha	Rh2BG052000 Rh2CG054100 Rh2DG053100 Rh6AG060600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	868
AccII	CGCG	1 cut(s)	28
AciI	CCGC	7 cut(s)	26, 28, 176, 313, 541, 576, 632
AclWI	GGATC	2 cut(s)	304, 423
AcsI	RAATTY	4 cut(s)	169, 185, 464, 964
AcuI	CTGAAG	6 cut(s)	29, 520, 594, 656, 744, 1089
AcyI	GRCGYC	2 cut(s)	23, 70
AfaI	GTAC	2 cut(s)	261, 288
AfiI	CCNNNNNNNGG	3 cut(s)	540, 611, 901
AgsI	TTSAA	9 cut(s)	245, 253, 266, 496, 619, 719, 767, 1017, 1112
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	6 cut(s)	502, 560, 608, 627, 770, 812
AluI	AGCT	6 cut(s)	502, 560, 608, 627, 770, 812
Alw21I	GWGCWC	2 cut(s)	399, 504
Alw26I	GTCTC	6 cut(s)	14, 55, 211, 296, 431, 683
AlwI	GGATC	2 cut(s)	304, 423
AlwNI	CAGNNNCTG	1 cut(s)	887
Ama87I	CYCGRG	1 cut(s)	859
AoxI	GGCC	1 cut(s)	783
ApeKI	GCWGC	4 cut(s)	126, 194, 560, 887
ApoI	RAATTY	4 cut(s)	169, 185, 464, 964
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	835, 1010
AsuHPI	GGTGA	3 cut(s)	190, 576, 593
AvaI	CYCGRG	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	835, 1010
BanI	GGYRCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	521
Bbv12I	GWGCWC	2 cut(s)	399, 504
BbvI	GCAGC	4 cut(s)	138, 181, 547, 874
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	6 cut(s)	14, 55, 211, 296, 431, 683
BfaI	CTAG	3 cut(s)	1023, 1076, 1119
BfmI	CTRYAG	2 cut(s)	737, 912
BisI	GCNGC	8 cut(s)	26, 29, 127, 195, 561, 577, 632, 888
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	8 cut(s)	27, 30, 128, 196, 562, 578, 633, 889
BmcAI	AGTACT	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	2 cut(s)	835, 1010
BmeT110I	CYCGRG	1 cut(s)	859
BmgT120I	GGNCC	2 cut(s)	835, 1010
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	5 cut(s)	373, 745, 874, 1040, 1078
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpmI	CTGGAG	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	493
BsaHI	GRCGYC	2 cut(s)	23, 70
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	26, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	540, 611, 901
Bse1I	ACTGG	2 cut(s)	451, 559
Bse3DI	GCAATG	4 cut(s)	128, 233, 393, 957
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	26, 587
BseLI	CCNNNNNNNGG	3 cut(s)	540, 611, 901
BseMI	GCAATG	4 cut(s)	128, 233, 393, 957
BseMII	CTCAG	3 cut(s)	412, 467, 891
BseNI	ACTGG	2 cut(s)	451, 559
BseRI	GAGGAG	2 cut(s)	422, 425
BseXI	GCAGC	4 cut(s)	138, 181, 547, 874
BseYI	CCCAGC	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	785
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	2 cut(s)	399, 504
BsiHKCI	CYCGRG	1 cut(s)	859
BslFI	GGGAC	2 cut(s)	841, 876
BslI	CCNNNNNNNGG	3 cut(s)	540, 611, 901
BsmAI	GTCTC	6 cut(s)	14, 55, 211, 296, 431, 683
BsmFI	GGGAC	2 cut(s)	841, 876
BsnI	GGCC	1 cut(s)	785
Bso31I	GGTCTC	1 cut(s)	683
BsoBI	CYCGRG	1 cut(s)	859
Bsp1286I	GDGCHC	2 cut(s)	399, 504
Bsp143I	GATC	4 cut(s)	296, 307, 428, 794
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	7 cut(s)	26, 28, 176, 313, 541, 576, 632
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	3 cut(s)	411, 466, 892
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	2 cut(s)	304, 423
BspT107I	GGYRCC	1 cut(s)	868
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	4 cut(s)	128, 233, 393, 957
BsrI	ACTGG	2 cut(s)	451, 559
BssECI	CCNNGG	2 cut(s)	26, 587
BssMI	GATC	4 cut(s)	296, 307, 428, 794
BssNI	GRCGYC	2 cut(s)	23, 70
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	588, 658, 741
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	2 cut(s)	23, 70
BstAPI	GCANNNNNTGC	4 cut(s)	123, 755, 911, 920
BstC8I	GCNNGC	2 cut(s)	119, 629
BstDEI	CTNAG	4 cut(s)	398, 453, 808, 900
BstDSI	CCRYGG	2 cut(s)	26, 587
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	4 cut(s)	299, 310, 431, 797
BstMAI	GTCTC	6 cut(s)	14, 55, 211, 296, 431, 683
BstMBI	GATC	4 cut(s)	296, 307, 428, 794
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 123, 203, 637, 755, 809, 911, 920
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	2 cut(s)	737, 912
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	138, 181, 547, 874
BsuRI	GGCC	1 cut(s)	785
BtgI	CCRYGG	2 cut(s)	26, 587
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	5 cut(s)	461, 663, 746, 851, 1095
Cac8I	GCNNGC	2 cut(s)	119, 629
CaiI	CAGNNNCTG	1 cut(s)	887
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	835, 1010
Cfr42I	CCGCGG	1 cut(s)	29
CseI	GACGC	3 cut(s)	31, 78, 963
Csp6I	GTAC	2 cut(s)	260, 287
CviAII	CATG	5 cut(s)	221, 322, 403, 505, 781
CviQI	GTAC	2 cut(s)	260, 287
DdeI	CTNAG	4 cut(s)	398, 453, 808, 900
DpnI	GATC	4 cut(s)	298, 309, 430, 796
DpnII	GATC	4 cut(s)	296, 307, 428, 794
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	556
Ecl136II	GAGCTC	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	2 cut(s)	835, 1010
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	6 cut(s)	29, 520, 594, 656, 744, 1089
Eco88I	CYCGRG	1 cut(s)	859
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	112
EcoT22I	ATGCAT	2 cut(s)	782, 1033
EcoT38I	GRGCYC	1 cut(s)	504
FaeI	CATG	5 cut(s)	224, 325, 406, 508, 784
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	2 cut(s)	841, 876
FatI	CATG	5 cut(s)	220, 321, 402, 504, 780
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	8 cut(s)	26, 29, 127, 195, 561, 577, 632, 888
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	8 cut(s)	26, 29, 127, 195, 561, 577, 632, 888
FspBI	CTAG	3 cut(s)	1023, 1076, 1119
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	8 cut(s)	26, 29, 127, 195, 561, 577, 632, 888
GsaI	CCCAGC	1 cut(s)	608
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	785
HgaI	GACGC	3 cut(s)	31, 78, 963
HhaI	GCGC	1 cut(s)	208
Hin1I	GRCGYC	2 cut(s)	23, 70
Hin1II	CATG	5 cut(s)	224, 325, 406, 508, 784
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	4 cut(s)	514, 530, 719, 1043
HphI	GGTGA	3 cut(s)	190, 576, 593
Hpy166II	GTNNAC	3 cut(s)	601, 734, 851
Hpy188I	TCNGA	6 cut(s)	273, 301, 901, 943, 1036, 1048
Hpy188III	TCNNGA	6 cut(s)	60, 322, 493, 686, 716, 861
Hpy8I	GTNNAC	3 cut(s)	601, 734, 851
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	6 cut(s)	175, 481, 544, 561, 658, 1023
HpyCH4III	ACNGT	3 cut(s)	588, 658, 741
HpyCH4IV	ACGT	1 cut(s)	1019
HpyCH4V	TGCA	9 cut(s)	126, 350, 386, 780, 817, 914, 950, 962, 1031
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 123, 203, 637, 755, 809, 911, 920
HpyF3I	CTNAG	4 cut(s)	398, 453, 808, 900
HpySE526I	ACGT	1 cut(s)	1019
Hsp92I	GRCGYC	2 cut(s)	23, 70
Hsp92II	CATG	5 cut(s)	224, 325, 406, 508, 784
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	307
KspI	CCGCGG	1 cut(s)	29
Kzo9I	GATC	4 cut(s)	296, 307, 428, 794
LmnI	GCTCC	3 cut(s)	202, 557, 624
Lsp1109I	GCAGC	4 cut(s)	138, 181, 547, 874
LweI	GCATC	5 cut(s)	373, 745, 874, 1040, 1078
MaeI	CTAG	3 cut(s)	1023, 1076, 1119
MaeII	ACGT	1 cut(s)	1019
MaeIII	GTNAC	2 cut(s)	336, 1114
MalI	GATC	4 cut(s)	298, 309, 430, 796
MboI	GATC	4 cut(s)	296, 307, 428, 794
MboII	GAAGA	8 cut(s)	35, 148, 226, 257, 292, 509, 690, 1082
MfeI	CAATTG	2 cut(s)	240, 951
MhlI	GDGCHC	2 cut(s)	399, 504
MluCI	AATT	9 cut(s)	169, 185, 240, 373, 464, 694, 906, 951, 964
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	224, 985
MnlI	CCTC	9 cut(s)	61, 400, 403, 406, 640, 717, 818, 895, 1001
Mph1103I	ATGCAT	2 cut(s)	782, 1033
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	2 cut(s)	225, 345
MspA1I	CMGCKG	3 cut(s)	28, 313, 634
MspR9I	CCNGG	1 cut(s)	114
MunI	CAATTG	2 cut(s)	240, 951
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	8 cut(s)	83, 123, 203, 637, 755, 809, 911, 920
NdeII	GATC	4 cut(s)	296, 307, 428, 794
NlaIII	CATG	5 cut(s)	224, 325, 406, 508, 784
NlaIV	GGNNCC	1 cut(s)	870
NmeAIII	GCCGAG	1 cut(s)	124
NsiI	ATGCAT	2 cut(s)	782, 1033
NspI	RCATGY	1 cut(s)	224
PagI	TCATGA	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	514, 719, 1043
PkrI	GCNGC	8 cut(s)	27, 30, 128, 196, 562, 578, 633, 889
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
PpuMI	RGGWCCY	1 cut(s)	1010
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	1010
Psp6I	CCWGG	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	870
PspPI	GGNCC	2 cut(s)	835, 1010
PspPPI	RGGWCCY	1 cut(s)	1010
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	887
RsaI	GTAC	2 cut(s)	261, 288
RsaNI	GTAC	2 cut(s)	260, 287
RseI	CAYNNNNRTG	2 cut(s)	225, 345
SacI	GAGCTC	1 cut(s)	504
SacII	CCGCGG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	8 cut(s)	26, 29, 127, 195, 561, 577, 632, 888
Sau3AI	GATC	4 cut(s)	296, 307, 428, 794
Sau96I	GGNCC	2 cut(s)	835, 1010
ScaI	AGTACT	1 cut(s)	261
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	2 cut(s)	399, 504
SfaNI	GCATC	5 cut(s)	373, 745, 874, 1040, 1078
SfcI	CTRYAG	2 cut(s)	737, 912
Sfr303I	CCGCGG	1 cut(s)	29
SgrBI	CCGCGG	1 cut(s)	29
SinI	GGWCC	2 cut(s)	835, 1010
SmiMI	CAYNNNNRTG	2 cut(s)	225, 345
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
Sse9I	AATT	9 cut(s)	169, 185, 240, 373, 464, 694, 906, 951, 964
SsiI	CCGC	7 cut(s)	26, 28, 176, 313, 541, 576, 632
SspMI	CTAG	3 cut(s)	1023, 1076, 1119
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	3 cut(s)	588, 658, 741
TaiI	ACGT	1 cut(s)	1022
TaqI	TCGA	3 cut(s)	59, 212, 722
TasI	AATT	9 cut(s)	169, 185, 240, 373, 464, 694, 906, 951, 964
TatI	WGTACW	2 cut(s)	259, 286
TauI	GCSGC	4 cut(s)	28, 31, 579, 634
TfiI	GAWTC	3 cut(s)	514, 719, 1043
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	5 cut(s)	461, 663, 746, 858, 1102
TseI	GCWGC	4 cut(s)	126, 194, 560, 887
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	5 cut(s)	461, 663, 746, 858, 1102
VpaK11BI	GGWCC	2 cut(s)	835, 1010
XapI	RAATTY	4 cut(s)	169, 185, 464, 964
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	3 cut(s)	1023, 1076, 1119
ZrmI	AGTACT	1 cut(s)	261
Zsp2I	ATGCAT	2 cut(s)	782, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.