Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018698

Physical Location & Seq

Genomic Coordinates Forward (+)

4250809 .. 4265446

Gene Structure 14638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG054100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTTTCGCTACTACGCTCGCCAAATCTAGGAGAGGAGAGAGAAATTCGAGACGCTCGCTATCTCCTCCAACGGGCAAATTCGTTCAAATTCAAACCTCTAGTCTCCACTACTTGACGCCGCGGCTCGTCGTCATTCTTCAGTCCTCTTATTCGAGACTTGGACGCCACGCCAAATCAGCAATCGCAATCGCCGAGATATACTATCCTGGCACGCAATGCAGCAAAACGAAGAAGTTATTAGGAGATACTCAACTTTCTAAAAATTTTGCGGTGAAGGAATTTGGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGATTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGAAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTTTGTCTTGTGATGATTATGGGTTTGAAAAGGAGCTTGCCGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGGTTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTATGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

369

Amino Acids

40.0

Weight (kDa)

5.51

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018698)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0007000 Rorug02G0007100 Rorug02G0007200 Rorug02G0007300 Rorug04G0004700 Rorug04G0004800
rosa_samantha	Rh2BG052000 Rh2CG054100 Rh2DG053100 Rh6AG060600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	853
AccII	CGCG	1 cut(s)	124
AciI	CCGC	6 cut(s)	122, 124, 272, 409, 540, 617
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	6 cut(s)	46, 80, 90, 265, 281, 949
AcuI	CTGAAG	5 cut(s)	125, 542, 641, 729, 1074
AcyI	GRCGYC	2 cut(s)	119, 166
AfaI	GTAC	2 cut(s)	357, 384
AfiI	CCNNNNNNNGG	4 cut(s)	30, 74, 559, 886
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	5 cut(s)	524, 556, 612, 755, 797
AluI	AGCT	5 cut(s)	524, 556, 612, 755, 797
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	6 cut(s)	46, 110, 151, 307, 392, 668
AlwI	GGATC	1 cut(s)	400
AlwNI	CAGNNNCTG	2 cut(s)	565, 872
Ama87I	CYCGRG	1 cut(s)	844
AoxI	GGCC	1 cut(s)	768
ApeKI	GCWGC	4 cut(s)	222, 290, 524, 872
ApoI	RAATTY	6 cut(s)	46, 80, 90, 265, 281, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	820, 995
AsuHPI	GGTGA	2 cut(s)	286, 541
AvaI	CYCGRG	1 cut(s)	844
AvaII	GGWCC	2 cut(s)	820, 995
BanI	GGYRCC	1 cut(s)	853
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	234, 277, 511, 859
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	6 cut(s)	46, 110, 151, 307, 392, 668
BfaI	CTAG	5 cut(s)	30, 102, 1008, 1061, 1104
BfmI	CTRYAG	2 cut(s)	722, 897
BisI	GCNGC	8 cut(s)	122, 125, 223, 291, 525, 541, 617, 873
BlpI	GCTNAGC	1 cut(s)	494
BlsI	GCNGC	8 cut(s)	123, 126, 224, 292, 526, 542, 618, 874
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	2 cut(s)	820, 995
BmeT110I	CYCGRG	1 cut(s)	844
BmgT120I	GGNCC	2 cut(s)	820, 995
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	5 cut(s)	469, 730, 859, 1025, 1063
BpmI	CTGGAG	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	494
BsaHI	GRCGYC	2 cut(s)	119, 166
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 74, 559, 886
Bse1I	ACTGG	1 cut(s)	523
Bse3DI	GCAATG	4 cut(s)	224, 329, 489, 942
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	4 cut(s)	30, 74, 559, 886
BseMI	GCAATG	4 cut(s)	224, 329, 489, 942
BseMII	CTCAG	2 cut(s)	508, 876
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	3 cut(s)	51, 57, 518
BseXI	GCAGC	4 cut(s)	234, 277, 511, 859
BseYI	CCCAGC	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	770
BshNI	GGYRCC	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	844
BslFI	GGGAC	2 cut(s)	826, 861
BslI	CCNNNNNNNGG	4 cut(s)	30, 74, 559, 886
BsmAI	GTCTC	6 cut(s)	46, 110, 151, 307, 392, 668
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	826, 861
BsnI	GGCC	1 cut(s)	770
Bso31I	GGTCTC	1 cut(s)	668
BsoBI	CYCGRG	1 cut(s)	844
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	392, 403, 779
Bsp1720I	GCTNAGC	1 cut(s)	494
BspACI	CCGC	6 cut(s)	122, 124, 272, 409, 540, 617
BspANI	GGCC	1 cut(s)	770
BspCNI	CTCAG	2 cut(s)	507, 877
BspFNI	CGCG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	901
BspPI	GGATC	1 cut(s)	400
BspT107I	GGYRCC	1 cut(s)	853
BspTNI	GGTCTC	1 cut(s)	668
BsrDI	GCAATG	4 cut(s)	224, 329, 489, 942
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	3 cut(s)	392, 403, 779
BssNI	GRCGYC	2 cut(s)	119, 166
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	643, 726
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	2 cut(s)	119, 166
BstAPI	GCANNNNNTGC	4 cut(s)	219, 740, 896, 905
BstC8I	GCNNGC	4 cut(s)	21, 59, 215, 614
BstDEI	CTNAG	3 cut(s)	494, 793, 885
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	395, 406, 782
BstMAI	GTCTC	6 cut(s)	46, 110, 151, 307, 392, 668
BstMBI	GATC	3 cut(s)	392, 403, 779
BstMWI	GCNNNNNNNGC	9 cut(s)	179, 219, 299, 562, 622, 740, 794, 896, 905
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	2 cut(s)	722, 897
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	234, 277, 511, 859
BsuRI	GGCC	1 cut(s)	770
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	574
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	4 cut(s)	648, 731, 836, 1080
Cac8I	GCNNGC	4 cut(s)	21, 59, 215, 614
CaiI	CAGNNNCTG	2 cut(s)	565, 872
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	820, 995
Cfr42I	CCGCGG	1 cut(s)	125
CseI	GACGC	4 cut(s)	63, 127, 174, 948
Csp6I	GTAC	2 cut(s)	356, 383
CviAII	CATG	4 cut(s)	317, 418, 499, 766
CviQI	GTAC	2 cut(s)	356, 383
DdeI	CTNAG	3 cut(s)	494, 793, 885
DpnI	GATC	3 cut(s)	394, 405, 781
DpnII	GATC	3 cut(s)	392, 403, 779
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	820, 995
Eco57I	CTGAAG	5 cut(s)	125, 542, 641, 729, 1074
Eco88I	CYCGRG	1 cut(s)	844
EcoO109I	RGGNCCY	1 cut(s)	995
EcoRII	CCWGG	1 cut(s)	208
EcoT22I	ATGCAT	2 cut(s)	767, 1018
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	4 cut(s)	320, 421, 502, 769
FaqI	GGGAC	2 cut(s)	826, 861
FatI	CATG	4 cut(s)	316, 417, 498, 765
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	8 cut(s)	122, 125, 223, 291, 525, 541, 617, 873
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	8 cut(s)	122, 125, 223, 291, 525, 541, 617, 873
FspBI	CTAG	5 cut(s)	30, 102, 1008, 1061, 1104
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	8 cut(s)	122, 125, 223, 291, 525, 541, 617, 873
GsaI	CCCAGC	1 cut(s)	556
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	770
HgaI	GACGC	4 cut(s)	63, 127, 174, 948
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	2 cut(s)	119, 166
Hin1II	CATG	4 cut(s)	320, 421, 502, 769
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	3 cut(s)	572, 704, 1028
HphI	GGTGA	2 cut(s)	286, 541
Hpy166II	GTNNAC	3 cut(s)	549, 719, 836
Hpy188I	TCNGA	6 cut(s)	369, 397, 886, 928, 1021, 1033
Hpy188III	TCNNGA	6 cut(s)	51, 156, 418, 671, 701, 846
Hpy8I	GTNNAC	3 cut(s)	549, 719, 836
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	271, 525, 643, 1008
HpyCH4III	ACNGT	2 cut(s)	643, 726
HpyCH4IV	ACGT	1 cut(s)	1004
HpyCH4V	TGCA	9 cut(s)	222, 446, 482, 765, 802, 899, 935, 947, 1016
HpyF10VI	GCNNNNNNNGC	9 cut(s)	179, 219, 299, 562, 622, 740, 794, 896, 905
HpyF3I	CTNAG	3 cut(s)	494, 793, 885
HpySE526I	ACGT	1 cut(s)	1004
Hsp92I	GRCGYC	2 cut(s)	119, 166
Hsp92II	CATG	4 cut(s)	320, 421, 502, 769
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	403
KspI	CCGCGG	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	392, 403, 779
LmnI	GCTCC	3 cut(s)	298, 521, 609
Lsp1109I	GCAGC	4 cut(s)	234, 277, 511, 859
LweI	GCATC	5 cut(s)	469, 730, 859, 1025, 1063
MaeI	CTAG	5 cut(s)	30, 102, 1008, 1061, 1104
MaeII	ACGT	1 cut(s)	1004
MaeIII	GTNAC	2 cut(s)	432, 1099
MalI	GATC	3 cut(s)	394, 405, 781
MboI	GATC	3 cut(s)	392, 403, 779
MboII	GAAGA	7 cut(s)	131, 244, 322, 353, 388, 675, 1067
MfeI	CAATTG	2 cut(s)	336, 936
MhlI	GDGCHC	1 cut(s)	495
MmeI	TCCRAC	3 cut(s)	95, 320, 970
Mph1103I	ATGCAT	2 cut(s)	767, 1018
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	2 cut(s)	321, 441
MspA1I	CMGCKG	3 cut(s)	124, 409, 619
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	2 cut(s)	336, 936
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	9 cut(s)	179, 219, 299, 562, 622, 740, 794, 896, 905
NdeII	GATC	3 cut(s)	392, 403, 779
NlaIII	CATG	4 cut(s)	320, 421, 502, 769
NlaIV	GGNNCC	1 cut(s)	855
NmeAIII	GCCGAG	1 cut(s)	220
NsiI	ATGCAT	2 cut(s)	767, 1018
NspI	RCATGY	1 cut(s)	320
PagI	TCATGA	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	572, 704, 1028
PkrI	GCNGC	8 cut(s)	123, 126, 224, 292, 526, 542, 618, 874
PpuMI	RGGWCCY	1 cut(s)	995
Psp5II	RGGWCCY	1 cut(s)	995
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	2 cut(s)	820, 995
PspPPI	RGGWCCY	1 cut(s)	995
PstI	CTGCAG	1 cut(s)	901
PstNI	CAGNNNCTG	2 cut(s)	565, 872
RsaI	GTAC	2 cut(s)	357, 384
RsaNI	GTAC	2 cut(s)	356, 383
RseI	CAYNNNNRTG	2 cut(s)	321, 441
SacII	CCGCGG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	8 cut(s)	122, 125, 223, 291, 525, 541, 617, 873
Sau3AI	GATC	3 cut(s)	392, 403, 779
Sau96I	GGNCC	2 cut(s)	820, 995
ScaI	AGTACT	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	9 cut(s)	101, 526, 558, 564, 614, 757, 799, 997, 1007
SfaNI	GCATC	5 cut(s)	469, 730, 859, 1025, 1063
SfcI	CTRYAG	2 cut(s)	722, 897
Sfr303I	CCGCGG	1 cut(s)	125
SgrBI	CCGCGG	1 cut(s)	125
SinI	GGWCC	2 cut(s)	820, 995
SmiMI	CAYNNNNRTG	2 cut(s)	321, 441
SsiI	CCGC	6 cut(s)	122, 124, 272, 409, 540, 617
SspMI	CTAG	5 cut(s)	30, 102, 1008, 1061, 1104
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	643, 726
TaiI	ACGT	1 cut(s)	1007
TaqI	TCGA	4 cut(s)	50, 155, 308, 707
TatI	WGTACW	2 cut(s)	355, 382
TauI	GCSGC	4 cut(s)	124, 127, 543, 619
TfiI	GAWTC	3 cut(s)	572, 704, 1028
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	4 cut(s)	648, 731, 843, 1087
TseI	GCWGC	4 cut(s)	222, 290, 524, 872
TspDTI	ATGAA	2 cut(s)	318, 585
TspRI	CASTG	4 cut(s)	648, 731, 843, 1087
VpaK11BI	GGWCC	2 cut(s)	820, 995
XapI	RAATTY	6 cut(s)	46, 80, 90, 265, 281, 949
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	5 cut(s)	30, 102, 1008, 1061, 1104
ZrmI	AGTACT	1 cut(s)	357
Zsp2I	ATGCAT	2 cut(s)	767, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.