Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015592

Physical Location & Seq

Genomic Coordinates Reverse (-)

912440 .. 914470

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0004800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGTTAACAGAGTTGGAGAGGTTACCGGAGGAGTGCATGGCCCATGTTCTTTCCCTCACGTCCCCCAAAGACGCGTGCCGATCAGCCGCCGTCTCCTCTGCCTTTCGCTCCGCCGCGCAATCCCAAACTCTTTGGGAACGTTTCTTACCCCATGACTATCGTCAAATCATCTCTCGATCCGTTTCTCCTCCTCTGCCATCAATCTCCTCTCTCTCTAACAAGGACCTCTACTTCCGTCTCTGCGACTCCCCCATCTTCCTCGACGATGGCAATTTCAGTTTCTCATTGGATAAATTGAGTGGTAAAAAATGTTGGATGCTGGGAGCCAGACTGTTGAGCATTACATGGGCAGACACTCCAGAATACTGGGAATGGAATTCTCTACCCGAATCCAGGTTCTCCGAAGTGGCTGAGCTCAGACTTGTATGGTGGCTTGAGATTAAGGGAAACATAGACACTAAAATTTTGTCCCCCGGAACAACCTACGCAGCTTACCTTGTATATCAGTTTCCAGAAGAATCACAATGGGGGTTTCAGGGAATGCCTATGACGGTGCGTGTCACCAATGAACAAAATGAAGTTGTAGCTGAGCATGATGTGTTCCTAGCAGACCCGCCAGAAGACATGCCTCCACAAGCTCGAAGCAGAGGAGATGGATGGATGGAGATCGAGTTGGGTGAAATTTTCAACCAAGAAGATGATGCTACTGTGGAGTTTCGTTTGAGGGAAACTGAGAGTGGCGTGCCAAAGGGCGGCCTTATTGTGGAAGGGTTACAAGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

29.76

Weight (kDa)

4.55

Isoelectric Point (pI)

65.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	6 - 49	5.4e-09	F-box-like
F-box	PF00646	6 - 47	2.4e-07	F-box domain
PP2	PF14299	103 - 261	4.7e-49	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06230 FvH4_4g06230 FvH4_4g06230
malus_domestica	MD16G1239400.v1.1
prunus_persica	Prupe.1G065500_v2.0.a1
pyrus_communis	pycom16g20030
rosa_chinensis	RchiOBHm_Chr4g0397951
rosa_laevigata	RLG00000009394
rosa_multiflora	Rmu_sc0000361.1_g000052 Rmu_sc0001074.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342850
rosa_rugosa	Rorug04G0004800
rosa_samantha	Rh4AG081100 Rh4DG074600
rosa_wichuraiana	Rw0G020270 Rw4G006760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	77, 119
AciI	CCGC	5 cut(s)	90, 114, 117, 617, 756
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	3 cut(s)	379, 465, 684
AfiI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	691
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	4 cut(s)	418, 494, 590, 641
AluI	AGCT	4 cut(s)	418, 494, 590, 641
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	100, 245
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	2 cut(s)	42, 757
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	3 cut(s)	379, 465, 684
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	43, 226
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	556, 692
AvaII	GGWCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	6 cut(s)	208, 263, 263, 650, 654, 658
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	100, 245
BfaI	CTAG	1 cut(s)	608
BisI	GCNGC	4 cut(s)	90, 117, 492, 757
BlpI	GCTNAGC	2 cut(s)	414, 591
BlsI	GCNGC	4 cut(s)	91, 118, 493, 758
Bme1390I	CCNGG	2 cut(s)	397, 477
Bme18I	GGWCC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	43, 226
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	397, 477
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	309, 694
BmuI	ACTGGG	1 cut(s)	379
BoxI	GACNNNNGTC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	345
Bpu1102I	GCTNAGC	2 cut(s)	414, 591
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 755, 766
Bse1I	ACTGG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	3 cut(s)	324, 665, 669
BseJI	GATNNNNATC	1 cut(s)	668
BseLI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
BseMII	CTCAG	4 cut(s)	405, 433, 582, 726
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	6 cut(s)	47, 88, 180, 183, 199, 666
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	322
Bsh1236I	CGCG	2 cut(s)	77, 119
BshFI	GGCC	2 cut(s)	44, 759
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	2 cut(s)	29, 477
BslFI	GGGAC	2 cut(s)	49, 457
BslI	CCNNNNNNNGG	3 cut(s)	396, 755, 766
BsmAI	GTCTC	2 cut(s)	100, 245
BsmBI	CGTCTC	2 cut(s)	100, 245
BsmFI	GGGAC	2 cut(s)	49, 457
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	44, 759
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	83, 179, 669
Bsp1720I	GCTNAGC	2 cut(s)	414, 591
BspACI	CCGC	5 cut(s)	90, 114, 117, 617, 756
BspANI	GGCC	2 cut(s)	44, 759
BspCNI	CTCAG	4 cut(s)	406, 432, 583, 727
BspFNI	CGCG	2 cut(s)	77, 119
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	3 cut(s)	83, 179, 669
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	3 cut(s)	336, 556, 712
BstC8I	GCNNGC	2 cut(s)	79, 746
BstDEI	CTNAG	4 cut(s)	414, 419, 591, 735
BstEII	GGTNACC	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	324, 665, 669
BstFNI	CGCG	2 cut(s)	77, 119
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	86, 182, 672
BstMAI	GTCTC	2 cut(s)	100, 245
BstMBI	GATC	3 cut(s)	83, 179, 669
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	631
BstPAI	GACNNNNGTC	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	395, 475
BstUI	CGCG	2 cut(s)	77, 119
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	44, 759
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	324, 665, 669
Cac8I	GCNNGC	2 cut(s)	79, 746
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	43, 226
CseI	GACGC	1 cut(s)	83
CviAII	CATG	6 cut(s)	40, 47, 155, 348, 596, 628
DdeI	CTNAG	4 cut(s)	414, 419, 591, 735
DpnI	GATC	3 cut(s)	85, 181, 671
DpnII	GATC	3 cut(s)	83, 179, 669
EciI	GGCGGA	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	418
Eco91I	GGTNACC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	420
Esp3I	CGTCTC	2 cut(s)	100, 245
FaeI	CATG	6 cut(s)	43, 50, 158, 351, 599, 631
FaqI	GGGAC	2 cut(s)	49, 457
FatI	CATG	6 cut(s)	39, 46, 154, 347, 595, 627
FauI	CCCGC	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	90, 117, 492, 757
FokI	GGATG	3 cut(s)	331, 672, 676
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	4 cut(s)	90, 117, 492, 757
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	90, 117, 492, 757
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	44, 759
HapII	CCGG	2 cut(s)	29, 477
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	6 cut(s)	43, 50, 158, 351, 599, 631
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	248, 392, 521
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	29, 477
HphI	GGTGA	2 cut(s)	556, 692
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	406, 422
Hpy188III	TCNNGA	3 cut(s)	177, 362, 515
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	764
HpyCH4III	ACNGT	3 cut(s)	336, 556, 712
HpyCH4IV	ACGT	2 cut(s)	62, 142
HpyCH4V	TGCA	1 cut(s)	39
HpyF3I	CTNAG	4 cut(s)	414, 419, 591, 735
HpySE526I	ACGT	2 cut(s)	62, 142
Hsp92II	CATG	6 cut(s)	43, 50, 158, 351, 599, 631
HspAI	GCGC	1 cut(s)	119
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	83, 179, 669
LmnI	GCTCC	2 cut(s)	116, 326
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	2 cut(s)	309, 694
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	62, 142
MaeIII	GTNAC	3 cut(s)	24, 562, 774
MalI	GATC	3 cut(s)	85, 181, 671
MboI	GATC	3 cut(s)	83, 179, 669
MboII	GAAGA	4 cut(s)	250, 530, 635, 710
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	5 cut(s)	274, 296, 379, 465, 684
MluI	ACGCGT	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	296
MseI	TTAA	2 cut(s)	8, 444
MspI	CCGG	2 cut(s)	29, 477
MspR9I	CCNGG	2 cut(s)	397, 477
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	77, 119
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	83, 179, 669
NlaIII	CATG	6 cut(s)	43, 50, 158, 351, 599, 631
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	631
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	392, 521
PkrI	GCNGC	4 cut(s)	91, 118, 493, 758
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	395
PspEI	GGTNACC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	43, 226
PspPPI	RGGWCCY	1 cut(s)	226
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	8, 444
SatI	GCNGC	4 cut(s)	90, 117, 492, 757
Sau3AI	GATC	3 cut(s)	83, 179, 669
Sau96I	GGNCC	2 cut(s)	43, 226
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	397, 477
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	309, 694
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	274, 296, 379, 465, 684
SsiI	CCGC	5 cut(s)	90, 114, 117, 617, 756
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	395, 475
TaaI	ACNGT	3 cut(s)	336, 556, 712
TaiI	ACGT	2 cut(s)	65, 145
TaqI	TCGA	4 cut(s)	178, 264, 643, 672
TasI	AATT	5 cut(s)	274, 296, 379, 465, 684
TauI	GCSGC	3 cut(s)	92, 119, 759
TfiI	GAWTC	2 cut(s)	392, 521
Tru1I	TTAA	2 cut(s)	8, 444
Tru9I	TTAA	2 cut(s)	8, 444
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	585, 594, 774
TspGWI	ACGGA	2 cut(s)	172, 227
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	3 cut(s)	379, 465, 684
XceI	RCATGY	1 cut(s)	631
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.