Rroxscaffold_5G00342850

Arginine

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
12019536 .. 12022839
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342850.1

Sequence Viewer

Length: 1470 bp
ATGTTCAGTGTTTCTGTGTTCTCAGCTTCCTCAGGCCTCAGTTTTCATTTGGGTTATAGAAATAACTGGACTTTTGGAAGACCAAGTGCTTCTCTCTCAGAGGAAAGTAGCTATTTAGAGCCTAGAAAGAAGGAAGAGAAAACAAGTGGGAGAGTGACGGCCTGGTCTGCCACCGAGGATAAGATTTTACTTTCTAGCTCTCTGACAACTTCTCAGCAACAGAACCCGACTCCACTTGTTACCGCCTTAAAGGCTTCAGCTGAACAAAATGCTGCTACCTTTCACTTTCCTGGGCACAACAGAGGTCGAGCTGCACCTGATTCTATAACTGAACTTATTGGTCTAAAACCTTTTCTTCATGACTTACCTGAGCTTCCAGAACTTGACAACCTCTTTTCTCCGGAAGGCCCAATTTTAGATGCACAACAACAGGCAGCCAAACTCTTTGGCTCATTGGAGACATGGTTCCTTGTAGGAGGTACAACATGTGGAATTCAAGCAGCCATTATGGCTACTTGTTCCCCTGGAGATATTTTAGTTCTCCCTCGGAATTCCCATATATCAGCTGTATCTGCTTTAATATTGTCTGGTGCGGTGGAGACGGCTATCAAGGAAGTAGAGAAAGAAGGGCAAAAGGCAGCCGCTGTTTTCATCACTTCCCCAACATATCATGGTATGTGCAGCAACTTGAGCGAGATAACCCAATTGTGCCATTCTCATGGGATTCCTGTAATTGTTGATGAGGCCCATGGGGCACATTTGGGATTTCATCCCCATATGCCGAATTCAGCCATGCAGCAAGGTGCTGATATAGCTGTCCAATCCACTCACAAGGTTCTTTGCTCGCTCACACAATCATCGATGTTGCACTTATCAGGTAGACTTGTAGATAGGGAAAAGATTTCTAGATGCCTTCAAACACTTCAAAGCACTAGTCCTAGTTATCTTCTTTTGGCATCATTAGATGCTGCTAGAGCTCAAATTAGATTTCGACAGCTTGGCTTGTCTGGTTATGAAGCTGATGAAATTCTGTATGAGGATCATGATATCATTTGTGAACTTGTTGAGACCCAATGCATTACTTTTGTAATTACCCTTGGAACTTGCAGAGAGCATGTTCAGAAGCTTGTATCAGGCATAAAGCATCTAGCAGCCACTTTTGCATCGACCTGTGCTGATAAAAGGAAGGTGGACGGCAATAATCTTGCACCGTTTGCAGATATTAAAACTAGCTTGATTCCTAGAGATGCATTTTTTAGTGGTAAAAGGAGAGTGAGTATCGAAAAGAGCTTGGGCGAAGTTTGTGGTGAGCTTATATGTCCATATCCACCTGGGATTCCAGTATTGATTCCTGGGGAGATTATCACAAAGAAAGCTTTGGATTATCTGCTACATGTTAGAAACAAGGGTGCTGTCATCACTGGAGCTTCTGATTCCCCACTTTCTTCCATAATTGTCTGCAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

489

Amino Acids

52.75

Weight (kDa)

6.31

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OKR_DC_1 PF01276 77 - 199 7.5e-27 Orn/Lys/Arg decarboxylase, major domain
OKR_DC_1 PF01276 201 - 328 1.6e-29 Orn/Lys/Arg decarboxylase, major domain
OKR_DC_1_C PF03711 423 - 468 1.6e-08 Orn/Lys/Arg decarboxylase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015592)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 880
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 3 cut(s) 243, 593, 642
AclWI GGATC 1 cut(s) 1047
AcsI RAATTY 4 cut(s) 492, 550, 784, 1026
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 481
AflIII ACRYGT 2 cut(s) 485, 1393
AgsI TTSAA 3 cut(s) 497, 917, 926
AhlI ACTAGT 1 cut(s) 932
AjnI CCWGG 5 cut(s) 161, 289, 523, 1330, 1351
AloI GAACNNNNNNTCC 2 cut(s) 449, 481
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 3 cut(s) 452, 593, 1061
AlwI GGATC 1 cut(s) 1047
AlwNI CAGNNNCTG 1 cut(s) 644
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 4 cut(s) 34, 159, 406, 744
ApeKI GCWGC 9 cut(s) 272, 311, 434, 500, 638, 681, 796, 968, 1151
ApoI RAATTY 4 cut(s) 492, 550, 784, 1026
ArsI GACNNNNNNTTYG 2 cut(s) 919, 951
AspS9I GGNCC 2 cut(s) 407, 745
AsuHPI GGTGA 1 cut(s) 1319
AxyI CCTNAGG 1 cut(s) 31
BaeGI GKGCMC 2 cut(s) 297, 757
BanII GRGCYC 1 cut(s) 979
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 9 cut(s) 259, 298, 446, 512, 650, 693, 808, 955, 1163
BceAI ACGGC 3 cut(s) 174, 618, 1210
BciT130I CCWGG 5 cut(s) 163, 291, 525, 1332, 1353
BcoDI GTCTC 3 cut(s) 452, 593, 1061
BcuI ACTAGT 1 cut(s) 932
BfaI CTAG 9 cut(s) 123, 195, 906, 933, 939, 972, 1148, 1230, 1242
BglI GCCNNNNNGGC 3 cut(s) 251, 509, 752
Bme1390I CCNGG 5 cut(s) 163, 291, 525, 1332, 1353
BmgT120I GGNCC 2 cut(s) 407, 745
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 5 cut(s) 163, 291, 525, 1332, 1353
BmsI GCATC 7 cut(s) 409, 899, 955, 965, 1153, 1172, 1237
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 546, 1443
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 709
Bsa29I ATCGAT 1 cut(s) 860
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 8 cut(s) 174, 290, 523, 545, 748, 1096, 1331, 1352
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 4 cut(s) 449, 479, 1261, 1291
Bse1I ACTGG 3 cut(s) 71, 1340, 1426
Bse21I CCTNAGG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 5 cut(s) 163, 291, 525, 1332, 1353
BseCI ATCGAT 1 cut(s) 860
BseDI CCNNGG 8 cut(s) 174, 290, 523, 545, 748, 1096, 1331, 1352
BseGI GGATG 1 cut(s) 769
BseMII CTCAG 6 cut(s) 36, 45, 52, 111, 227, 360
BseNI ACTGG 3 cut(s) 71, 1340, 1426
BseSI GKGCMC 2 cut(s) 297, 757
BseXI GCAGC 9 cut(s) 259, 298, 446, 512, 650, 693, 808, 955, 1163
BsgI GTGCAG 2 cut(s) 297, 700
BshFI GGCC 4 cut(s) 36, 161, 408, 746
BshVI ATCGAT 1 cut(s) 860
BsiHKAI GWGCWC 1 cut(s) 979
BsiSI CCGG 1 cut(s) 401
BsmAI GTCTC 3 cut(s) 452, 593, 1061
BsmBI CGTCTC 1 cut(s) 593
BsnI GGCC 4 cut(s) 36, 161, 408, 746
Bso31I GGTCTC 1 cut(s) 1061
Bsp1286I GDGCHC 3 cut(s) 297, 757, 979
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 1 cut(s) 1039
Bsp19I CCATGG 1 cut(s) 748
BspACI CCGC 3 cut(s) 243, 593, 642
BspANI GGCC 4 cut(s) 36, 161, 408, 746
BspCNI CTCAG 6 cut(s) 35, 44, 51, 110, 226, 361
BspDI ATCGAT 1 cut(s) 860
BspEI TCCGGA 1 cut(s) 400
BspHI TCATGA 2 cut(s) 358, 1042
BspLI GGNNCC 1 cut(s) 467
BspPI GGATC 1 cut(s) 1047
BspTNI GGTCTC 1 cut(s) 1061
BsrI ACTGG 3 cut(s) 71, 1340, 1426
BssECI CCNNGG 8 cut(s) 174, 290, 523, 545, 748, 1096, 1331, 1352
BssMI GATC 1 cut(s) 1039
BssT1I CCWWGG 2 cut(s) 748, 1096
Bst2UI CCWGG 5 cut(s) 163, 291, 525, 1332, 1353
Bst4CI ACNGT 1 cut(s) 1212
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 1214
BstC8I GCNNGC 1 cut(s) 845
BstDEI CTNAG 6 cut(s) 22, 31, 38, 97, 213, 369
BstDSI CCRYGG 1 cut(s) 748
BstF5I GGATG 1 cut(s) 769
BstKTI GATC 1 cut(s) 1042
BstMAI GTCTC 3 cut(s) 452, 593, 1061
BstMBI GATC 1 cut(s) 1039
BstNI CCWGG 5 cut(s) 163, 291, 525, 1332, 1353
BstNSI RCATGY 3 cut(s) 489, 1118, 1397
BstSCI CCNGG 5 cut(s) 161, 289, 523, 1330, 1351
BstSLI GKGCMC 2 cut(s) 297, 757
BstV1I GCAGC 9 cut(s) 259, 298, 446, 512, 650, 693, 808, 955, 1163
BstV2I GAAGAC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 719
Bsu15I ATCGAT 1 cut(s) 860
Bsu36I CCTNAGG 1 cut(s) 31
BsuRI GGCC 4 cut(s) 36, 161, 408, 746
BsuTUI ATCGAT 1 cut(s) 860
BtgI CCRYGG 1 cut(s) 748
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 2 cut(s) 13, 1419
Cac8I GCNNGC 1 cut(s) 845
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 2 cut(s) 358, 1042
Cfr13I GGNCC 2 cut(s) 407, 745
ClaI ATCGAT 1 cut(s) 860
Csp6I GTAC 1 cut(s) 480
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 6 cut(s) 22, 31, 38, 97, 213, 369
DpnI GATC 1 cut(s) 1041
DpnII GATC 1 cut(s) 1039
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 977
Eco130I CCWWGG 2 cut(s) 748, 1096
Eco147I AGGCCT 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 979
Eco31I GGTCTC 1 cut(s) 1061
Eco32I GATATC 1 cut(s) 1048
Eco53kI GAGCTC 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 977
EcoRI GAATTC 3 cut(s) 492, 550, 784
EcoRII CCWGG 5 cut(s) 161, 289, 523, 1330, 1351
EcoRV GATATC 1 cut(s) 1048
EcoT14I CCWWGG 2 cut(s) 748, 1096
EcoT22I ATGCAT 2 cut(s) 1079, 1252
EcoT38I GRGCYC 1 cut(s) 979
ErhI CCWWGG 2 cut(s) 748, 1096
Esp3I CGTCTC 1 cut(s) 593
FauNDI CATATG 1 cut(s) 777
FblI GTMKAC 1 cut(s) 880
FokI GGATG 1 cut(s) 756
FriOI GRGCYC 1 cut(s) 979
FspBI CTAG 9 cut(s) 123, 195, 906, 933, 939, 972, 1148, 1230, 1242
GsuI CTGGAG 2 cut(s) 546, 1443
HaeIII GGCC 4 cut(s) 36, 161, 408, 746
HapII CCGG 1 cut(s) 401
HindIII AAGCTT 2 cut(s) 1124, 1374
HinfI GANTC 7 cut(s) 229, 320, 724, 1237, 1336, 1348, 1433
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 1319
Hpy166II GTNNAC 3 cut(s) 881, 1058, 1192
Hpy188I TCNGA 5 cut(s) 100, 204, 549, 1122, 1432
Hpy188III TCNNGA 5 cut(s) 359, 377, 401, 906, 1043
Hpy8I GTNNAC 3 cut(s) 881, 1058, 1192
HpyAV CCTTC 5 cut(s) 124, 398, 620, 923, 1180
HpyCH4III ACNGT 1 cut(s) 1212
HpyF3I CTNAG 6 cut(s) 22, 31, 38, 97, 213, 369
Kpn2I TCCGGA 1 cut(s) 400
Kzo9I GATC 1 cut(s) 1039
LmnI GCTCC 1 cut(s) 1424
Lsp1109I GCAGC 9 cut(s) 259, 298, 446, 512, 650, 693, 808, 955, 1163
LweI GCATC 7 cut(s) 409, 899, 955, 965, 1153, 1172, 1237
MaeI CTAG 9 cut(s) 123, 195, 906, 933, 939, 972, 1148, 1230, 1242
MaeIII GTNAC 2 cut(s) 154, 238
MalI GATC 1 cut(s) 1041
MboI GATC 1 cut(s) 1039
MboII GAAGA 5 cut(s) 90, 146, 347, 938, 1437
MfeI CAATTG 1 cut(s) 704
MhlI GDGCHC 3 cut(s) 297, 757, 979
MlyI GAGTC 1 cut(s) 223
Mph1103I ATGCAT 2 cut(s) 1079, 1252
MroI TCCGGA 1 cut(s) 400
MseI TTAA 3 cut(s) 248, 578, 1224
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 3 cut(s) 260, 566, 644
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 5 cut(s) 163, 291, 525, 1332, 1353
MunI CAATTG 1 cut(s) 704
MvaI CCWGG 5 cut(s) 163, 291, 525, 1332, 1353
NcoI CCATGG 1 cut(s) 748
NdeI CATATG 1 cut(s) 777
NdeII GATC 1 cut(s) 1039
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 2 cut(s) 1079, 1252
NspI RCATGY 3 cut(s) 489, 1118, 1397
PagI TCATGA 2 cut(s) 358, 1042
PceI AGGCCT 1 cut(s) 36
PciI ACATGT 2 cut(s) 485, 1393
PfeI GAWTC 6 cut(s) 320, 724, 1237, 1336, 1348, 1433
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PscI ACATGT 2 cut(s) 485, 1393
Psp124BI GAGCTC 1 cut(s) 979
Psp6I CCWGG 5 cut(s) 161, 289, 523, 1330, 1351
PspGI CCWGG 5 cut(s) 161, 289, 523, 1330, 1351
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 2 cut(s) 407, 745
PstNI CAGNNNCTG 1 cut(s) 644
PvuII CAGCTG 2 cut(s) 260, 566
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 979
SaqAI TTAA 3 cut(s) 248, 578, 1224
Sau3AI GATC 1 cut(s) 1039
Sau96I GGNCC 2 cut(s) 407, 745
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 5 cut(s) 163, 291, 525, 1332, 1353
SduI GDGCHC 3 cut(s) 297, 757, 979
SfaNI GCATC 7 cut(s) 409, 899, 955, 965, 1153, 1172, 1237
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 688
SmoI CTYRAG 1 cut(s) 688
SpeI ACTAGT 1 cut(s) 932
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 3 cut(s) 243, 593, 642
SspI AATATT 1 cut(s) 582
SspMI CTAG 9 cut(s) 123, 195, 906, 933, 939, 972, 1148, 1230, 1242
SstI GAGCTC 1 cut(s) 979
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 5 cut(s) 161, 289, 523, 1330, 1351
StyI CCWWGG 2 cut(s) 748, 1096
TaaI ACNGT 1 cut(s) 1212
TaqI TCGA 5 cut(s) 307, 860, 991, 1166, 1281
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 6 cut(s) 320, 724, 1237, 1336, 1348, 1433
Tru1I TTAA 3 cut(s) 248, 578, 1224
Tru9I TTAA 3 cut(s) 248, 578, 1224
TscAI CASTG 2 cut(s) 13, 1426
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 9 cut(s) 272, 311, 434, 500, 638, 681, 796, 968, 1151
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 6 cut(s) 35, 347, 640, 758, 1029, 1038
TspRI CASTG 2 cut(s) 13, 1426
XapI RAATTY 4 cut(s) 492, 550, 784, 1026
XbaI TCTAGA 1 cut(s) 905
XceI RCATGY 3 cut(s) 489, 1118, 1397
XmiI GTMKAC 1 cut(s) 880
XspI CTAG 9 cut(s) 123, 195, 906, 933, 939, 972, 1148, 1230, 1242
Zsp2I ATGCAT 2 cut(s) 1079, 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.