Rmu_sc0000361.1_g000052

Arginine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000361.1
OG0015592
Physical Location & Seq
Forward (+)
232402 .. 235397
2996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000361.1_g000052.1.cds

Sequence Viewer

Length: 1668 bp
atgttcagtgtttctgtgttctcagcctcctcagacctaagttttcatttgggttttagaaataactggacttttggaaaaccaagcgcttctctctctcaggaaagtagcaatttagagcctagaaagaaggaagtgacggccaggtctgccaccaaggataagatcttactttctagctctccgacgacttctcagcaacagaactccactccacttgttactgccttgaaggcttcagctgaacaaaatgctgctacctttcactttcccgggcacaacagaggtcgagctgcaccagattctataactgaacttattggtctaaacccttttcttcatgacttacctgagcttcctgaacttgacagcctcttttctccggaagggccaattttggatgcacaacaacaggcagccaaactctttggctcattggagacatggttccttgtaggaggtacgacttgtggaattcaagcagccattatggctacttgttcccctggagatattttagttctggctaggaattcccatatatcagctgtatctgctttaatattgtctggtgcagtacccaagtacattatccctgattataattttgactgggacattgctgttggggtcactccatcacaggtggagacggctatcaaggaagtggagaaagaagggaaaaaggcagccgctgttttcatcacttccccaacatatcatggtatatgcagcaacttgagcgagataacccaattgtgccattctcatgggattcctgtaattgttgatgaggcccatggggcacatttgggatttcatccccatatgccgaattcagccatgcagcaaggtgctgatatagctgtccaatccactcacaaggttctttgctctctcacacaatcatcgatgttgcacttgtcaggtaaacttgtagatagagaaaagatctctagatgccttcaaacacttcaaagcactagtcctagttatcttcttttggcatcattagatgctgcgagagctcaaattagtgaagatcctgaaactatttttgaaagagcattgcaactggctattgaagctagggatatgttgagaaagactagaggtatttcagtgcttgatgtttcaagcttccctaagttccctgcaattgatcctttgcggcttactataggatttcgacagcttggcttgtctggttatgaagctgatgaaattctgtatgaggatcatgatatcatttgtgaacttgttgagacccaatgcattacttttgtaattacccttggaacttgcagagagcatgttcagaagcttgtatcaggcataaagcatctagcagccacttctgcatcaacttgtgctgataaaaggaaggtggacggcgataatcttgcactgtttgcagatattaaaactagcttgattcctagagatgcattttttagtggtaaaaggagagtgagtatcggaaagagcttgggcgaagtttgtggggagcttatatgtccatatccacctgggattccagtattgattcctggggagattatcacaaagaaagctttggattatctgctacatgttagaagcaagggcgctgtcatcactggagcttctgattcccaactttcttccataattgtctgcaacaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OKR_DC_1 OKR_DC_1_C

Protein Analysis

555

Amino Acids

59.84

Weight (kDa)

6.14

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06230 FvH4_4g06230 FvH4_4g06230
malus_domestica MD16G1239400.v1.1
prunus_persica Prupe.1G065500_v2.0.a1
pyrus_communis pycom16g20030
rosa_chinensis RchiOBHm_Chr4g0397951
rosa_laevigata RLG00000009394
rosa_multiflora Rmu_sc0000361.1_g000052 Rmu_sc0001074.1_g000007
rosa_roxburghii Rroxscaffold_5G00342850
rosa_rugosa Rorug04G0004800
rosa_samantha Rh4AG081100 Rh4DG074600
rosa_wichuraiana Rw0G020270 Rw4G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AasI GACNNNNNNGTC 1 cut(s) 145
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 2 cut(s) 693, 1171
AclWI GGATC 3 cut(s) 1037, 1157, 1245
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 4 cut(s) 474, 532, 835, 1224
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 3 cut(s) 463, 579, 587
AfeI AGCGCT 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 1591
AgsI TTSAA 7 cut(s) 232, 479, 968, 977, 1061, 1085, 1137
AhlI ACTAGT 1 cut(s) 983
AjnI CCWGG 4 cut(s) 143, 505, 1528, 1549
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
Alw21I GWGCWC 1 cut(s) 1030
Alw26I GTCTC 3 cut(s) 434, 644, 1259
AlwI GGATC 3 cut(s) 1037, 1157, 1245
AlwNI CAGNNNCTG 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 88
AoxI GGCC 3 cut(s) 141, 389, 795
ApeKI GCWGC 9 cut(s) 254, 293, 416, 482, 689, 732, 847, 1019, 1349
ApoI RAATTY 4 cut(s) 474, 532, 835, 1224
ArsI GACNNNNNNTTYG 2 cut(s) 970, 1002
AspLEI GCGC 2 cut(s) 89, 1610
AspS9I GGNCC 2 cut(s) 389, 796
AsuC2I CCSGG 2 cut(s) 273, 274
AvaI CYCGRG 1 cut(s) 272
BaeGI GKGCMC 2 cut(s) 279, 808
BanII GRGCYC 1 cut(s) 1030
Bbv12I GWGCWC 1 cut(s) 1030
BbvI GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
BccI CCATC 1 cut(s) 646
BceAI ACGGC 3 cut(s) 156, 669, 1408
BcgI CGANNNNNNTGC 2 cut(s) 1385, 1419
BciT130I CCWGG 4 cut(s) 145, 507, 1530, 1551
BcnI CCSGG 2 cut(s) 273, 274
BcoDI GTCTC 3 cut(s) 434, 644, 1259
BcuI ACTAGT 1 cut(s) 983
BfmI CTRYAG 1 cut(s) 1179
BfoI RGCGCY 2 cut(s) 90, 1611
BglI GCCNNNNNGGC 3 cut(s) 233, 491, 803
BglII AGATCT 2 cut(s) 165, 951
Bme1390I CCNGG 6 cut(s) 145, 273, 274, 507, 1530, 1551
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 389, 796
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 6 cut(s) 145, 273, 274, 507, 1530, 1551
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 7 cut(s) 391, 950, 1006, 1016, 1351, 1370, 1435
BmuI ACTGGG 1 cut(s) 622
BpmI CTGGAG 2 cut(s) 528, 1641
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 2 cut(s) 273, 274
Bsa29I ATCGAT 1 cut(s) 911
BsaI GGTCTC 1 cut(s) 1259
BsaJI CCNNGG 7 cut(s) 156, 272, 505, 799, 1294, 1529, 1550
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 1459, 1489
Bse1I ACTGG 5 cut(s) 71, 617, 1080, 1538, 1624
Bse3DI GCAATG 2 cut(s) 618, 1067
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 4 cut(s) 145, 507, 1530, 1551
BseCI ATCGAT 1 cut(s) 911
BseDI CCNNGG 7 cut(s) 156, 272, 505, 799, 1294, 1529, 1550
BseGI GGATG 2 cut(s) 406, 820
BseMI GCAATG 2 cut(s) 618, 1067
BseMII CTCAG 5 cut(s) 36, 45, 113, 209, 342
BseNI ACTGG 5 cut(s) 71, 617, 1080, 1538, 1624
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 279, 808
BseXI GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
BsgI GTGCAG 2 cut(s) 279, 594
BshFI GGCC 3 cut(s) 143, 391, 797
BshVI ATCGAT 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 1030
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 273, 383
BslFI GGGAC 1 cut(s) 629
BsmAI GTCTC 3 cut(s) 434, 644, 1259
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 3 cut(s) 143, 391, 797
Bso31I GGTCTC 1 cut(s) 1259
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 279, 808, 1030
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 5 cut(s) 165, 951, 1042, 1162, 1237
Bsp19I CCATGG 1 cut(s) 799
BspACI CCGC 2 cut(s) 693, 1171
BspANI GGCC 3 cut(s) 143, 391, 797
BspCNI CTCAG 5 cut(s) 35, 44, 112, 208, 343
BspDI ATCGAT 1 cut(s) 911
BspEI TCCGGA 1 cut(s) 382
BspHI TCATGA 2 cut(s) 340, 1240
BspLI GGNNCC 1 cut(s) 449
BspPI GGATC 3 cut(s) 1037, 1157, 1245
BspTNI GGTCTC 1 cut(s) 1259
BsrDI GCAATG 2 cut(s) 618, 1067
BsrI ACTGG 5 cut(s) 71, 617, 1080, 1538, 1624
BssECI CCNNGG 7 cut(s) 156, 272, 505, 799, 1294, 1529, 1550
BssMI GATC 5 cut(s) 165, 951, 1042, 1162, 1237
BssT1I CCWWGG 3 cut(s) 156, 799, 1294
Bst2UI CCWGG 4 cut(s) 145, 507, 1530, 1551
Bst4CI ACNGT 1 cut(s) 1410
BstAPI GCANNNNNTGC 1 cut(s) 1412
BstDEI CTNAG 7 cut(s) 22, 31, 38, 99, 195, 351, 1146
BstDSI CCRYGG 1 cut(s) 799
BstF5I GGATG 2 cut(s) 406, 820
BstH2I RGCGCY 2 cut(s) 90, 1611
BstHHI GCGC 2 cut(s) 89, 1610
BstKTI GATC 5 cut(s) 168, 954, 1045, 1165, 1240
BstMAI GTCTC 3 cut(s) 434, 644, 1259
BstMBI GATC 5 cut(s) 165, 951, 1042, 1162, 1237
BstNI CCWGG 4 cut(s) 145, 507, 1530, 1551
BstNSI RCATGY 2 cut(s) 1316, 1595
BstSCI CCNGG 6 cut(s) 143, 271, 272, 505, 1528, 1549
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 2 cut(s) 279, 808
BstV1I GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
BstX2I RGATCY 3 cut(s) 165, 951, 1042
BstXI CCANNNNNNTGG 1 cut(s) 770
BstYI RGATCY 3 cut(s) 165, 951, 1042
Bsu15I ATCGAT 1 cut(s) 911
BsuRI GGCC 3 cut(s) 143, 391, 797
BsuTUI ATCGAT 1 cut(s) 911
BtgI CCRYGG 1 cut(s) 799
BtsCI GGATG 2 cut(s) 406, 820
BtsIMutI CAGTG 4 cut(s) 13, 1128, 1406, 1617
CaiI CAGNNNCTG 1 cut(s) 695
CciI TCATGA 2 cut(s) 340, 1240
CfoI GCGC 2 cut(s) 89, 1610
Cfr13I GGNCC 2 cut(s) 389, 796
Cfr9I CCCGGG 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 911
Csp6I GTAC 3 cut(s) 462, 578, 586
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 9 cut(s) 341, 444, 722, 770, 800, 844, 1241, 1313, 1592
CviQI GTAC 3 cut(s) 462, 578, 586
DdeI CTNAG 7 cut(s) 22, 31, 38, 99, 195, 351, 1146
DpnI GATC 5 cut(s) 167, 953, 1044, 1164, 1239
DpnII GATC 5 cut(s) 165, 951, 1042, 1162, 1237
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 1028
Eco130I CCWWGG 3 cut(s) 156, 799, 1294
Eco24I GRGCYC 1 cut(s) 1030
Eco31I GGTCTC 1 cut(s) 1259
Eco32I GATATC 1 cut(s) 1246
Eco47III AGCGCT 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 1028
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 1028
EcoRI GAATTC 3 cut(s) 474, 532, 835
EcoRII CCWGG 4 cut(s) 143, 505, 1528, 1549
EcoRV GATATC 1 cut(s) 1246
EcoT14I CCWWGG 3 cut(s) 156, 799, 1294
EcoT22I ATGCAT 2 cut(s) 1277, 1450
EcoT38I GRGCYC 1 cut(s) 1030
ErhI CCWWGG 3 cut(s) 156, 799, 1294
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 9 cut(s) 344, 447, 725, 773, 803, 847, 1244, 1316, 1595
FaqI GGGAC 1 cut(s) 629
FatI CATG 9 cut(s) 340, 443, 721, 769, 799, 843, 1240, 1312, 1591
FauNDI CATATG 1 cut(s) 828
FokI GGATG 2 cut(s) 413, 807
FriOI GRGCYC 1 cut(s) 1030
GlaI GCGC 2 cut(s) 88, 1609
GsuI CTGGAG 2 cut(s) 528, 1641
HaeII RGCGCY 2 cut(s) 90, 1611
HaeIII GGCC 3 cut(s) 143, 391, 797
HapII CCGG 2 cut(s) 273, 383
HhaI GCGC 2 cut(s) 89, 1610
Hin1II CATG 9 cut(s) 344, 447, 725, 773, 803, 847, 1244, 1316, 1595
Hin6I GCGC 2 cut(s) 87, 1608
HinP1I GCGC 2 cut(s) 87, 1608
HindIII AAGCTT 3 cut(s) 1138, 1322, 1572
HinfI GANTC 6 cut(s) 302, 775, 1435, 1534, 1546, 1631
HpaII CCGG 2 cut(s) 273, 383
Hpy166II GTNNAC 3 cut(s) 932, 1256, 1390
Hpy188I TCNGA 5 cut(s) 34, 186, 1320, 1481, 1630
Hpy188III TCNNGA 7 cut(s) 101, 341, 359, 383, 957, 1046, 1241
Hpy8I GTNNAC 3 cut(s) 932, 1256, 1390
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 6 cut(s) 124, 226, 380, 671, 974, 1378
HpyCH4III ACNGT 1 cut(s) 1410
HpyF3I CTNAG 7 cut(s) 22, 31, 38, 99, 195, 351, 1146
Hsp92II CATG 9 cut(s) 344, 447, 725, 773, 803, 847, 1244, 1316, 1595
HspAI GCGC 2 cut(s) 87, 1608
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 5 cut(s) 165, 951, 1042, 1162, 1237
LmnI GCTCC 2 cut(s) 1507, 1622
Lsp1109I GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
LweI GCATC 7 cut(s) 391, 950, 1006, 1016, 1351, 1370, 1435
MaeIII GTNAC 3 cut(s) 136, 220, 631
MalI GATC 5 cut(s) 167, 953, 1044, 1164, 1239
MboI GATC 5 cut(s) 165, 951, 1042, 1162, 1237
MboII GAAGA 4 cut(s) 329, 989, 1052, 1635
MfeI CAATTG 2 cut(s) 755, 1158
MflI RGATCY 3 cut(s) 165, 951, 1042
MhlI GDGCHC 3 cut(s) 279, 808, 1030
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 8 cut(s) 37, 40, 278, 383, 452, 787, 1106, 1228
Mph1103I ATGCAT 2 cut(s) 1277, 1450
MroI TCCGGA 1 cut(s) 382
MseI TTAA 2 cut(s) 560, 1422
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 3 cut(s) 242, 548, 695
MspI CCGG 2 cut(s) 273, 383
MspR9I CCNGG 6 cut(s) 145, 273, 274, 507, 1530, 1551
MunI CAATTG 2 cut(s) 755, 1158
MvaI CCWGG 4 cut(s) 145, 507, 1530, 1551
NciI CCSGG 2 cut(s) 273, 274
NcoI CCATGG 1 cut(s) 799
NdeI CATATG 1 cut(s) 828
NdeII GATC 5 cut(s) 165, 951, 1042, 1162, 1237
NlaIII CATG 9 cut(s) 344, 447, 725, 773, 803, 847, 1244, 1316, 1595
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 2 cut(s) 136, 631
NsiI ATGCAT 2 cut(s) 1277, 1450
NspI RCATGY 2 cut(s) 1316, 1595
PagI TCATGA 2 cut(s) 340, 1240
PciI ACATGT 1 cut(s) 1591
PfeI GAWTC 6 cut(s) 302, 775, 1435, 1534, 1546, 1631
PscI ACATGT 1 cut(s) 1591
PsiI TTATAA 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 1030
Psp6I CCWGG 4 cut(s) 143, 505, 1528, 1549
PspGI CCWGG 4 cut(s) 143, 505, 1528, 1549
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 2 cut(s) 389, 796
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 3 cut(s) 165, 951, 1042
PvuII CAGCTG 2 cut(s) 242, 548
RsaI GTAC 3 cut(s) 463, 579, 587
RsaNI GTAC 3 cut(s) 462, 578, 586
RseI CAYNNNNRTG 1 cut(s) 768
SacI GAGCTC 1 cut(s) 1030
SaqAI TTAA 2 cut(s) 560, 1422
Sau3AI GATC 5 cut(s) 165, 951, 1042, 1162, 1237
Sau96I GGNCC 2 cut(s) 389, 796
ScrFI CCNGG 6 cut(s) 145, 273, 274, 507, 1530, 1551
SduI GDGCHC 3 cut(s) 279, 808, 1030
SfaNI GCATC 7 cut(s) 391, 950, 1006, 1016, 1351, 1370, 1435
SfcI CTRYAG 1 cut(s) 1179
SmaI CCCGGG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SpeI ACTAGT 1 cut(s) 983
SsiI CCGC 2 cut(s) 693, 1171
SspI AATATT 1 cut(s) 564
SstI GAGCTC 1 cut(s) 1030
StyD4I CCNGG 6 cut(s) 143, 271, 272, 505, 1528, 1549
StyI CCWWGG 3 cut(s) 156, 799, 1294
TaaI ACNGT 1 cut(s) 1410
TaqI TCGA 3 cut(s) 289, 911, 1189
TatI WGTACW 1 cut(s) 585
TauI GCSGC 2 cut(s) 695, 1174
TfiI GAWTC 6 cut(s) 302, 775, 1435, 1534, 1546, 1631
Tru1I TTAA 2 cut(s) 560, 1422
Tru9I TTAA 2 cut(s) 560, 1422
TscAI CASTG 4 cut(s) 13, 1128, 1413, 1624
TseFI GTSAC 2 cut(s) 136, 631
TseI GCWGC 9 cut(s) 254, 293, 416, 482, 689, 732, 847, 1019, 1349
Tsp45I GTSAC 2 cut(s) 136, 631
TspDTI ATGAA 6 cut(s) 35, 329, 691, 809, 1227, 1236
TspMI CCCGGG 1 cut(s) 272
TspRI CASTG 4 cut(s) 13, 1128, 1413, 1624
XapI RAATTY 4 cut(s) 474, 532, 835, 1224
XbaI TCTAGA 1 cut(s) 956
XceI RCATGY 2 cut(s) 1316, 1595
XmaI CCCGGG 1 cut(s) 272
Zsp2I ATGCAT 2 cut(s) 1277, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.