FvH4_4g06230

Arginine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
5578422 .. 5581903
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06230.t1

Sequence Viewer

Length: 1689 bp
ATGCTCAGTGTTTCTGTGTTCTCAGCTTCCTCAGACCTTCAGACTTTGCATTTGGGTTTTAGGAATAACTGGACTTTCGGAAGACCACGCGCTTCTCTATCTCAGGAAAGTATAAATTTAGAGCCTAGAGAGAAGGAAGATGAAACAAGTTGGACAGTGACGGCCAGGTCTGCCACCAAGGATAAGAGTTTAGTTTCTAGCTCTCTGACGACTTCCAAGCAACAGAACTCTACTCCACTTGTCACTGCCTTGAAGGCTTCAGCTGAACAAAATGCCGCCACCTTTCACTTTCCTGGGCACAACAGAGGTCGAGCTGCACCAAATTCTATAACTGAACTTATTGGTTCCAAACCTTTTCTTCATGACTTACCTGAGCTTCCAGAACTTGACAACCTCTTTTCTCCGGAAGGGCCAATTTTAGATGCACAACAACAGGCAGCCAAACTCTTTGGCTCATTGGAGACATGGTTCCTTGTAGGAGGTACGACATGTGGAATTCAAGCAGCCATTATGGCTACTTGTTCCCCTGGAGATATTTTAGTTCTCCCTCGGAATTCCCATATATCAGCTGTATCGGCTTTAATATTGTCTGGTGCGGTACCCAAGTACATTATCCCTGATTATAACTCTGACTGGAACATTGCTGTTGGGGTCACTCCATCACAGGTGGAGACGGCTATCAAGGAAGTGGAGAAAGAAGGGCAAAAGGCAGCTGCTGTTTTCATCACTTCTCCAACATATCATGGTATATGCAGCAACTTGAGCGAGATAACCCAATTGTGCCATTCTCATGGGATCCCTGTGATTGTTGATGAGGCCCATGGAGCGCATTTGGGATTTCATCCCCATATGCCGAGTTCAGCCATCCAGCAAGGTGCTGATATAGCTGTCCAATCCACTCACAAGGTTCTTTGCTCGCTCACACAATCATCAATGTTGCACTTGTCTGGTACACTTGTAGATAGAGGAAAGATTTCTAGATGCCTTCAAACACTTCAAAGCAGTAGTCCTAGTTATCTTCTATTGGCATCATTAGATGCAGCTAGAGCTCAAATTAGTGAAGATCCTGAAACCATTTTTGATAAAGCATTGCAACTGGCTATTGAAGCTAGGAATATGTTGAGAAAGACTACTGGTATTTCAGTGCTTGATGTTACAAGCTTCCCAAAGTTTCCTGCAATTGATCCTTTGCGGCTTACTATAGGATTTCGACAGCTTGGCTTGTCTGGTTTTGAAGCTGATGAAATTTTGTACAAGGATCATGATATCATTTGTGAACTAGTTGAGACCCAATCCATTACTTTTGTAATTACCCTTGGAACTTGTAGAGAGCATGTTCAGAAGCTTGTATCAGGCATACAGCATATAGCAGCCGCTTCTCCATCATCTTGTGCTGCTAAAATGAAGGTGGACGGTAATAATCTTGCACCGTTTGCAGATATTAAAACTAGCTTGATTCCTAGAGATGCATTTTTTAGTGGTAAAAAGAGAGCGAGTATCGAAAACAGCTTGGGCGAGGTTTGTGGGGAGCTTATATGTCCATATCCACCTGGGATTCCAGTGTTGATTCCTGGAGAGATTATAACAAAGAAAGCTTTGGATTATCTGCTACATGTTAGAAGCAAGGGCGCTGTCATCACTGGTGCTTCTGATTCCCTACTTTCATCCATAGTTATCTGTAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

563

Amino Acids

60.32

Weight (kDa)

6.14

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OKR_DC_1 PF01276 78 - 385 4.4e-69 Orn/Lys/Arg decarboxylase, major domain
Aminotran_1_2 PF00155 141 - 357 4.8e-11 Aminotransferase class I and II
Beta_elim_lyase PF01212 141 - 302 9.1e-07 Beta-eliminating lyase
Aminotran_5 PF00266 155 - 304 6e-06 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 162 - 276 5.5e-08 DegT/DnrJ/EryC1/StrS aminotransferase family
SepSecS PF05889 178 - 303 5.6e-06 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
OKR_DC_1_C PF03711 497 - 541 1.4e-07 Orn/Lys/Arg decarboxylase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015592)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 624, 1583
AasI GACNNNNNNGTC 1 cut(s) 166
Acc65I GGTACC 1 cut(s) 598
AccB1I GGYRCC 1 cut(s) 598
AccII CGCG 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 4 cut(s) 276, 596, 1192, 1374
AclWI GGATC 5 cut(s) 790, 803, 1058, 1178, 1266
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 5 cut(s) 115, 322, 495, 553, 1245
AcuI CTGAAG 2 cut(s) 23, 243
AfaI GTAC 5 cut(s) 484, 600, 608, 952, 1253
AflIII ACRYGT 2 cut(s) 488, 1612
AgsI TTSAA 6 cut(s) 253, 500, 989, 998, 1106, 1235
AhlI ACTAGT 1 cut(s) 1279
AjnI CCWGG 5 cut(s) 164, 292, 526, 1549, 1570
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
Alw21I GWGCWC 1 cut(s) 1051
Alw26I GTCTC 3 cut(s) 455, 665, 1280
AlwI GGATC 5 cut(s) 790, 803, 1058, 1178, 1266
AlwNI CAGNNNCTG 1 cut(s) 716
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 3 cut(s) 162, 410, 816
ApeKI GCWGC 9 cut(s) 314, 437, 503, 710, 713, 753, 1040, 1370, 1394
ApoI RAATTY 5 cut(s) 115, 322, 495, 553, 1245
ArsI GACNNNNNNTTYG 4 cut(s) 34, 66, 991, 1023
Asp700I GAANNNNTTC 1 cut(s) 973
Asp718I GGTACC 1 cut(s) 598
AspLEI GCGC 3 cut(s) 92, 829, 1631
AspS9I GGNCC 2 cut(s) 410, 817
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 4 cut(s) 590, 623, 942, 975
BamHI GGATCC 1 cut(s) 795
BanI GGYRCC 1 cut(s) 598
BanII GRGCYC 1 cut(s) 1051
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 1051
BbvI GCAGC 9 cut(s) 301, 449, 515, 700, 722, 765, 1052, 1381, 1382
BccI CCATC 3 cut(s) 667, 872, 1390
BceAI ACGGC 2 cut(s) 177, 690
BciT130I CCWGG 5 cut(s) 166, 294, 528, 1551, 1572
BcoDI GTCTC 3 cut(s) 455, 665, 1280
BcuI ACTAGT 1 cut(s) 1279
BfaI CTAG 9 cut(s) 126, 198, 978, 1011, 1044, 1110, 1280, 1449, 1461
BfmI CTRYAG 1 cut(s) 1200
BfoI RGCGCY 1 cut(s) 1632
BglI GCCNNNNNGGC 2 cut(s) 254, 512
Bme1390I CCNGG 5 cut(s) 166, 294, 528, 1551, 1572
BmgT120I GGNCC 2 cut(s) 410, 817
BmiI GGNNCC 4 cut(s) 346, 470, 600, 797
BmrFI CCNGG 5 cut(s) 166, 294, 528, 1551, 1572
BmsI GCATC 5 cut(s) 412, 971, 1027, 1037, 1456
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 2 cut(s) 549, 1593
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 781
BsaI GGTCTC 1 cut(s) 1280
BsaJI CCNNGG 7 cut(s) 177, 293, 526, 548, 820, 1315, 1550
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bse1I ACTGG 6 cut(s) 74, 638, 1101, 1138, 1559, 1645
Bse3DI GCAATG 2 cut(s) 639, 1088
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 5 cut(s) 166, 294, 528, 1551, 1572
BseDI CCNNGG 7 cut(s) 177, 293, 526, 548, 820, 1315, 1550
BseGI GGATG 3 cut(s) 841, 864, 1664
BseMI GCAATG 2 cut(s) 639, 1088
BseMII CTCAG 5 cut(s) 19, 36, 45, 116, 363
BseNI ACTGG 6 cut(s) 74, 638, 1101, 1138, 1559, 1645
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 9 cut(s) 301, 449, 515, 700, 722, 765, 1052, 1381, 1382
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 164, 412, 818
BshNI GGYRCC 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 1051
BsiSI CCGG 1 cut(s) 404
BsmAI GTCTC 3 cut(s) 455, 665, 1280
BsmBI CGTCTC 1 cut(s) 665
BsnI GGCC 3 cut(s) 164, 412, 818
Bso31I GGTCTC 1 cut(s) 1280
Bsp1286I GDGCHC 2 cut(s) 300, 1051
Bsp13I TCCGGA 1 cut(s) 403
Bsp1407I TGTACA 1 cut(s) 1251
Bsp143I GATC 4 cut(s) 795, 1063, 1183, 1258
Bsp19I CCATGG 1 cut(s) 820
BspACI CCGC 4 cut(s) 276, 596, 1192, 1374
BspANI GGCC 3 cut(s) 164, 412, 818
BspCNI CTCAG 5 cut(s) 18, 35, 44, 115, 364
BspEI TCCGGA 1 cut(s) 403
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 2 cut(s) 361, 1261
BspLI GGNNCC 4 cut(s) 346, 470, 600, 797
BspPI GGATC 5 cut(s) 790, 803, 1058, 1178, 1266
BspT107I GGYRCC 1 cut(s) 598
BspTNI GGTCTC 1 cut(s) 1280
BsrDI GCAATG 2 cut(s) 639, 1088
BsrGI TGTACA 1 cut(s) 1251
BsrI ACTGG 6 cut(s) 74, 638, 1101, 1138, 1559, 1645
BssECI CCNNGG 7 cut(s) 177, 293, 526, 548, 820, 1315, 1550
BssMI GATC 4 cut(s) 795, 1063, 1183, 1258
BssT1I CCWWGG 3 cut(s) 177, 820, 1315
Bst2UI CCWGG 5 cut(s) 166, 294, 528, 1551, 1572
Bst4CI ACNGT 3 cut(s) 157, 1415, 1431
BstAPI GCANNNNNTGC 1 cut(s) 1433
BstAUI TGTACA 1 cut(s) 1251
BstC8I GCNNGC 1 cut(s) 917
BstDEI CTNAG 5 cut(s) 5, 22, 31, 102, 372
BstDSI CCRYGG 1 cut(s) 820
BstF5I GGATG 3 cut(s) 841, 864, 1664
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 1632
BstHHI GCGC 3 cut(s) 92, 829, 1631
BstKTI GATC 4 cut(s) 798, 1066, 1186, 1261
BstMAI GTCTC 3 cut(s) 455, 665, 1280
BstMBI GATC 4 cut(s) 795, 1063, 1183, 1258
BstNI CCWGG 5 cut(s) 166, 294, 528, 1551, 1572
BstNSI RCATGY 3 cut(s) 492, 1337, 1616
BstSCI CCNGG 5 cut(s) 164, 292, 526, 1549, 1570
BstSFI CTRYAG 1 cut(s) 1200
BstSLI GKGCMC 1 cut(s) 300
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 9 cut(s) 301, 449, 515, 700, 722, 765, 1052, 1381, 1382
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 2 cut(s) 795, 1063
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 2 cut(s) 795, 1063
BsuRI GGCC 3 cut(s) 164, 412, 818
BtgI CCRYGG 1 cut(s) 820
BtsCI GGATG 3 cut(s) 841, 864, 1664
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 6 cut(s) 13, 162, 243, 1149, 1566, 1638
Cac8I GCNNGC 1 cut(s) 917
CaiI CAGNNNCTG 1 cut(s) 716
CciI TCATGA 2 cut(s) 361, 1261
CfoI GCGC 3 cut(s) 92, 829, 1631
Cfr13I GGNCC 2 cut(s) 410, 817
Csp6I GTAC 5 cut(s) 483, 599, 607, 951, 1252
CviAII CATG 9 cut(s) 362, 465, 489, 743, 791, 821, 1262, 1334, 1613
CviQI GTAC 5 cut(s) 483, 599, 607, 951, 1252
DdeI CTNAG 5 cut(s) 5, 22, 31, 102, 372
DpnI GATC 4 cut(s) 797, 1065, 1185, 1260
DpnII GATC 4 cut(s) 795, 1063, 1183, 1258
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 1049
Eco130I CCWWGG 3 cut(s) 177, 820, 1315
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 1280
Eco32I GATATC 1 cut(s) 1267
Eco53kI GAGCTC 1 cut(s) 1049
Eco57I CTGAAG 2 cut(s) 23, 243
EcoICRI GAGCTC 1 cut(s) 1049
EcoRI GAATTC 2 cut(s) 495, 553
EcoRII CCWGG 5 cut(s) 164, 292, 526, 1549, 1570
EcoRV GATATC 1 cut(s) 1267
EcoT14I CCWWGG 3 cut(s) 177, 820, 1315
EcoT22I ATGCAT 1 cut(s) 1471
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 3 cut(s) 177, 820, 1315
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 9 cut(s) 365, 468, 492, 746, 794, 824, 1265, 1337, 1616
FatI CATG 9 cut(s) 361, 464, 488, 742, 790, 820, 1261, 1333, 1612
FauNDI CATATG 1 cut(s) 849
FokI GGATG 3 cut(s) 828, 851, 1651
FriOI GRGCYC 1 cut(s) 1051
FspBI CTAG 9 cut(s) 126, 198, 978, 1011, 1044, 1110, 1280, 1449, 1461
GlaI GCGC 3 cut(s) 91, 828, 1630
GsuI CTGGAG 2 cut(s) 549, 1593
HaeII RGCGCY 1 cut(s) 1632
HaeIII GGCC 3 cut(s) 164, 412, 818
HapII CCGG 1 cut(s) 404
HhaI GCGC 3 cut(s) 92, 829, 1631
Hin1II CATG 9 cut(s) 365, 468, 492, 746, 794, 824, 1265, 1337, 1616
Hin6I GCGC 3 cut(s) 90, 827, 1629
HinP1I GCGC 3 cut(s) 90, 827, 1629
HindIII AAGCTT 3 cut(s) 1159, 1343, 1593
HinfI GANTC 4 cut(s) 1456, 1555, 1567, 1652
HpaII CCGG 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 953, 1277, 1411
Hpy188I TCNGA 8 cut(s) 34, 42, 80, 207, 552, 631, 1341, 1651
Hpy188III TCNNGA 7 cut(s) 104, 362, 380, 404, 978, 1067, 1262
Hpy8I GTNNAC 3 cut(s) 953, 1277, 1411
HpyAV CCTTC 7 cut(s) 47, 127, 247, 401, 692, 995, 1399
HpyCH4III ACNGT 3 cut(s) 157, 1415, 1431
HpyF3I CTNAG 5 cut(s) 5, 22, 31, 102, 372
Hsp92II CATG 9 cut(s) 365, 468, 492, 746, 794, 824, 1265, 1337, 1616
HspAI GCGC 3 cut(s) 90, 827, 1629
Kpn2I TCCGGA 1 cut(s) 403
KpnI GGTACC 1 cut(s) 602
Kzo9I GATC 4 cut(s) 795, 1063, 1183, 1258
LmnI GCTCC 2 cut(s) 824, 1528
Lsp1109I GCAGC 9 cut(s) 301, 449, 515, 700, 722, 765, 1052, 1381, 1382
LweI GCATC 5 cut(s) 412, 971, 1027, 1037, 1456
MaeI CTAG 9 cut(s) 126, 198, 978, 1011, 1044, 1110, 1280, 1449, 1461
MaeIII GTNAC 4 cut(s) 157, 241, 652, 1153
MalI GATC 4 cut(s) 797, 1065, 1185, 1260
MboI GATC 4 cut(s) 795, 1063, 1183, 1258
MboII GAAGA 5 cut(s) 93, 149, 350, 1010, 1073
MfeI CAATTG 2 cut(s) 776, 1179
MflI RGATCY 2 cut(s) 795, 1063
MhlI GDGCHC 2 cut(s) 300, 1051
MmeI TCCRAC 2 cut(s) 131, 758
MnlI CCTC 8 cut(s) 40, 299, 404, 473, 558, 808, 959, 1510
Mph1103I ATGCAT 1 cut(s) 1471
MroI TCCGGA 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 973
MseI TTAA 2 cut(s) 581, 1443
MslI CAYNNNNRTG 1 cut(s) 789
MspA1I CMGCKG 3 cut(s) 263, 569, 713
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 5 cut(s) 166, 294, 528, 1551, 1572
MunI CAATTG 2 cut(s) 776, 1179
MvaI CCWGG 5 cut(s) 166, 294, 528, 1551, 1572
MvnI CGCG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 820
NdeI CATATG 1 cut(s) 849
NdeII GATC 4 cut(s) 795, 1063, 1183, 1258
NlaIII CATG 9 cut(s) 365, 468, 492, 746, 794, 824, 1265, 1337, 1616
NlaIV GGNNCC 4 cut(s) 346, 470, 600, 797
NmeAIII GCCGAG 1 cut(s) 879
NmuCI GTSAC 3 cut(s) 157, 241, 652
NsiI ATGCAT 1 cut(s) 1471
NspI RCATGY 3 cut(s) 492, 1337, 1616
PagI TCATGA 2 cut(s) 361, 1261
PciI ACATGT 2 cut(s) 488, 1612
PdmI GAANNNNTTC 1 cut(s) 973
PfeI GAWTC 4 cut(s) 1456, 1555, 1567, 1652
PfoI TCCNGGA 1 cut(s) 1570
PscI ACATGT 2 cut(s) 488, 1612
PsiI TTATAA 2 cut(s) 624, 1583
Psp124BI GAGCTC 1 cut(s) 1051
Psp6I CCWGG 5 cut(s) 164, 292, 526, 1549, 1570
PspGI CCWGG 5 cut(s) 164, 292, 526, 1549, 1570
PspN4I GGNNCC 4 cut(s) 346, 470, 600, 797
PspPI GGNCC 2 cut(s) 410, 817
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 2 cut(s) 795, 1063
PvuII CAGCTG 3 cut(s) 263, 569, 713
RsaI GTAC 5 cut(s) 484, 600, 608, 952, 1253
RsaNI GTAC 5 cut(s) 483, 599, 607, 951, 1252
RseI CAYNNNNRTG 1 cut(s) 789
SacI GAGCTC 1 cut(s) 1051
SaqAI TTAA 2 cut(s) 581, 1443
Sau3AI GATC 4 cut(s) 795, 1063, 1183, 1258
Sau96I GGNCC 2 cut(s) 410, 817
ScrFI CCNGG 5 cut(s) 166, 294, 528, 1551, 1572
SduI GDGCHC 2 cut(s) 300, 1051
SfaNI GCATC 5 cut(s) 412, 971, 1027, 1037, 1456
SfcI CTRYAG 1 cut(s) 1200
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 1 cut(s) 760
SmoI CTYRAG 1 cut(s) 760
SpeI ACTAGT 1 cut(s) 1279
SsiI CCGC 4 cut(s) 276, 596, 1192, 1374
SspI AATATT 1 cut(s) 585
SspMI CTAG 9 cut(s) 126, 198, 978, 1011, 1044, 1110, 1280, 1449, 1461
SstI GAGCTC 1 cut(s) 1051
StyD4I CCNGG 5 cut(s) 164, 292, 526, 1549, 1570
StyI CCWWGG 3 cut(s) 177, 820, 1315
TaaI ACNGT 3 cut(s) 157, 1415, 1431
TaqI TCGA 3 cut(s) 310, 1210, 1500
TatI WGTACW 2 cut(s) 606, 1251
TauI GCSGC 3 cut(s) 278, 1195, 1376
TfiI GAWTC 4 cut(s) 1456, 1555, 1567, 1652
Tru1I TTAA 2 cut(s) 581, 1443
Tru9I TTAA 2 cut(s) 581, 1443
TscAI CASTG 6 cut(s) 13, 162, 250, 1149, 1566, 1645
TseFI GTSAC 3 cut(s) 157, 241, 652
TseI GCWGC 9 cut(s) 314, 437, 503, 710, 713, 753, 1040, 1370, 1394
Tsp45I GTSAC 3 cut(s) 157, 241, 652
TspDTI ATGAA 7 cut(s) 156, 350, 712, 830, 1257, 1418, 1653
TspRI CASTG 6 cut(s) 13, 162, 250, 1149, 1566, 1645
XapI RAATTY 5 cut(s) 115, 322, 495, 553, 1245
XbaI TCTAGA 1 cut(s) 977
XceI RCATGY 3 cut(s) 492, 1337, 1616
XmnI GAANNNNTTC 1 cut(s) 973
XspI CTAG 9 cut(s) 126, 198, 978, 1011, 1044, 1110, 1280, 1449, 1461
Zsp2I ATGCAT 1 cut(s) 1471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.