Rw4G006760

Arginine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015592
Physical Location & Seq
Forward (+)
14219898 .. 14224729
4832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006760.1

Sequence Viewer

Length: 1644 bp
ATGTTCTCTTTATGCTTTTTTCATTTGGGTTTTAGAAATAACTGGACTTTTGGAAGACCAAGCGCTTCCCTCTCTCAGGAAAGTAGCAATTTAGAGCCTAGAAAGAAGGAAGTGACAGCCAGGTCTGCCACCAAGGATAAGATCTTACTTTCTAGCTCTCCGACGACTTCTCAGCAACAGAACTCCACTCCACTTGTTACTGCCTTGAAGGCTTCAGCTGAACAAAATGCTGCTACCTTTCACTTTCCTGGGCACAACAGAGGTCGAGCTGCACCAGATTCTATAACTGAACTTATTGGTCTAAACCCTTTTCTTCATGACTTACCTGAGCTTCCTGAACTTGACAGCCTCTTTTCTCCGGAAGGGCCAATTTTGGATGCACAACAACAGGCAGCCAAACTCTTTGGCTCATTGGAGACATGGTTCCTTGTAGGAGGTACGACATGTGGAATTCAAGCAGCCATTATGGCTACTTGTTCCCCTGGAGATATTTTAGTTCTGGCTAGGAATTCCCATATATCAGCTGTATCTGCTTTAATATTGTCTGGTGCAGTACCCAAGTACATTATCCCTGATTATAATTTTGACTGGGACATTGCTGTCGGGGTCACTCCATCACAGGTGGAGACGGCTATCAAGGAAGTGGAGAAAGAAGGGAAAAAGGCAGCCGCTGTTTTCATCACTTCCCCAACATATCATGGTATATGCAGCAACTTGAGCGAGATAACCCAATTGTGCCATTCTCATGGGATTCCTGTAATTGTTGATGAGGCCCATGGGGCACATTTGGGATTTCATCCCCATATGCCGAATTCAGCCATGCAGCAAGGTGCTGATATAGCTGTCCAATCCACTCACAAGGTTCTTTGCTCTCTCACACAATCATCGATGTTGCACTTGTCAGGTAAACTTGTAGATAGAGAAAAGATCTCTAGATGCCTTCAAACACTTCAAAGCACTAGTCCTAGTTATCTTCTTTTGGCATCATTAGATGCTGCTAGAGCTCAAATTAGTGAAGATCCTGAAACTATTTTTGAAAGAGCATTGCAACTGGCTATTGAAGCTAGGGATATGTTGAGAAAGACTAGAGGTATTTCAGTGCTTGATGTTTCAAGCTTCCCTAAGTTCCCTGCAATTGATCCTTTGCGGCTTACTATAGGATTTCGACAGCTTGGCTTGTCTGGTTATGAAGCTGATGAAATTCTGTATGAGGATCATGATATCATTTGTGAACTTGTTGAGACCCAATGCATTACTTTTGTAATTACCCTTGGAACTTGCAGAGAGCATGTTCAGAAGCTTGTATCAGGCATAAAGCATCTAGCAGCCACTTCTGCATCGACTTGTGCTGATAAAAGGAAGGTGGACTGTGATAATCTTGCACTGTTTGCAGATATTAAAACTAGCTTGATTCCTAGAGATGCATTTTTTAGTGGTAAAAGGAGAGTGAGTATCGAAAAGAGCTTGGGCGAAGTTTGTGGGGAGCTTATATGTCCATATCCACCCGGGATTCCAGTATTGATTGCTGGGGAGATTATCACAAAGAAAGCTTTGGATTATCTGCTACATGTTAGAAGCAAGGGCGCTGTCATCACTGGAGCTTCTGATTCCCAACTTTCTTCCATAATTGTCTGCAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OKR_DC_1 OKR_DC_1_C

Protein Analysis

547

Amino Acids

59.24

Weight (kDa)

6.14

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OKR_DC_1 PF01276 63 - 369 8.3e-71 Orn/Lys/Arg decarboxylase, major domain
Aminotran_1_2 PF00155 126 - 361 9.2e-10 Aminotransferase class I and II
Beta_elim_lyase PF01212 126 - 290 4.2e-07 Beta-eliminating lyase
Aminotran_5 PF00266 140 - 289 3.8e-06 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 147 - 261 1.4e-06 DegT/DnrJ/EryC1/StrS aminotransferase family
SepSecS PF05889 169 - 289 6e-06 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
OKR_DC_1_C PF03711 481 - 526 2.1e-07 Orn/Lys/Arg decarboxylase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06230 FvH4_4g06230 FvH4_4g06230
malus_domestica MD16G1239400.v1.1
prunus_persica Prupe.1G065500_v2.0.a1
pyrus_communis pycom16g20030
rosa_chinensis RchiOBHm_Chr4g0397951
rosa_laevigata RLG00000009394
rosa_multiflora Rmu_sc0000361.1_g000052 Rmu_sc0001074.1_g000007
rosa_roxburghii Rroxscaffold_5G00342850
rosa_rugosa Rorug04G0004800
rosa_samantha Rh4AG081100 Rh4DG074600
rosa_wichuraiana Rw0G020270 Rw4G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AasI GACNNNNNNGTC 2 cut(s) 121, 599
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 2 cut(s) 669, 1147
AclWI GGATC 3 cut(s) 1013, 1133, 1221
AcsI RAATTY 4 cut(s) 450, 508, 811, 1200
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 3 cut(s) 439, 555, 563
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 76
AflIII ACRYGT 2 cut(s) 443, 1567
AgsI TTSAA 7 cut(s) 208, 455, 944, 953, 1037, 1061, 1113
AhlI ACTAGT 1 cut(s) 959
AjnI CCWGG 3 cut(s) 119, 247, 481
AloI GAACNNNNNNTCC 2 cut(s) 407, 439
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 3 cut(s) 410, 620, 1235
AlwI GGATC 3 cut(s) 1013, 1133, 1221
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 1505
Aor13HI TCCGGA 1 cut(s) 358
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 2 cut(s) 365, 771
ApeKI GCWGC 9 cut(s) 230, 269, 392, 458, 665, 708, 823, 995, 1325
ApoI RAATTY 4 cut(s) 450, 508, 811, 1200
ArsI GACNNNNNNTTYG 2 cut(s) 946, 978
AspLEI GCGC 2 cut(s) 65, 1586
AspS9I GGNCC 2 cut(s) 365, 772
AsuC2I CCSGG 2 cut(s) 1506, 1507
AvaI CYCGRG 1 cut(s) 1505
BaeGI GKGCMC 2 cut(s) 255, 784
BanII GRGCYC 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 9 cut(s) 217, 256, 404, 470, 677, 720, 835, 982, 1337
BccI CCATC 1 cut(s) 622
BceAI ACGGC 1 cut(s) 645
BciT130I CCWGG 3 cut(s) 121, 249, 483
BcnI CCSGG 2 cut(s) 1506, 1507
BcoDI GTCTC 3 cut(s) 410, 620, 1235
BcuI ACTAGT 1 cut(s) 959
BfmI CTRYAG 1 cut(s) 1155
BfoI RGCGCY 2 cut(s) 66, 1587
BglI GCCNNNNNGGC 3 cut(s) 209, 467, 779
BglII AGATCT 2 cut(s) 141, 927
Bme1390I CCNGG 5 cut(s) 121, 249, 483, 1506, 1507
BmeT110I CYCGRG 1 cut(s) 1505
BmgT120I GGNCC 2 cut(s) 365, 772
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 5 cut(s) 121, 249, 483, 1506, 1507
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 7 cut(s) 367, 926, 982, 992, 1327, 1346, 1411
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 2 cut(s) 504, 1617
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 736
BpuMI CCSGG 2 cut(s) 1506, 1507
Bsa29I ATCGAT 1 cut(s) 887
BsaI GGTCTC 1 cut(s) 1235
BsaJI CCNNGG 6 cut(s) 132, 248, 481, 775, 1270, 1505
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 4 cut(s) 407, 437, 1435, 1465
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 5 cut(s) 47, 593, 1056, 1514, 1600
Bse3DI GCAATG 2 cut(s) 594, 1043
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 3 cut(s) 121, 249, 483
BseCI ATCGAT 1 cut(s) 887
BseDI CCNNGG 6 cut(s) 132, 248, 481, 775, 1270, 1505
BseGI GGATG 2 cut(s) 382, 796
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 594, 1043
BseMII CTCAG 3 cut(s) 89, 185, 318
BseNI ACTGG 5 cut(s) 47, 593, 1056, 1514, 1600
BseSI GKGCMC 2 cut(s) 255, 784
BseXI GCAGC 9 cut(s) 217, 256, 404, 470, 677, 720, 835, 982, 1337
BseYI CCCAGC 1 cut(s) 1526
BsgI GTGCAG 2 cut(s) 255, 570
BshFI GGCC 2 cut(s) 367, 773
BshVI ATCGAT 1 cut(s) 887
BsiHKAI GWGCWC 1 cut(s) 1006
BsiHKCI CYCGRG 1 cut(s) 1505
BsiSI CCGG 2 cut(s) 359, 1506
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 3 cut(s) 410, 620, 1235
BsmBI CGTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 2 cut(s) 367, 773
Bso31I GGTCTC 1 cut(s) 1235
BsoBI CYCGRG 1 cut(s) 1505
Bsp1286I GDGCHC 3 cut(s) 255, 784, 1006
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 5 cut(s) 141, 927, 1018, 1138, 1213
Bsp19I CCATGG 1 cut(s) 775
BspACI CCGC 2 cut(s) 669, 1147
BspANI GGCC 2 cut(s) 367, 773
BspCNI CTCAG 3 cut(s) 88, 184, 319
BspDI ATCGAT 1 cut(s) 887
BspEI TCCGGA 1 cut(s) 358
BspHI TCATGA 2 cut(s) 316, 1216
BspLI GGNNCC 1 cut(s) 425
BspPI GGATC 3 cut(s) 1013, 1133, 1221
BspTNI GGTCTC 1 cut(s) 1235
BsrDI GCAATG 2 cut(s) 594, 1043
BsrI ACTGG 5 cut(s) 47, 593, 1056, 1514, 1600
BssECI CCNNGG 6 cut(s) 132, 248, 481, 775, 1270, 1505
BssMI GATC 5 cut(s) 141, 927, 1018, 1138, 1213
BssT1I CCWWGG 3 cut(s) 132, 775, 1270
Bst2UI CCWGG 3 cut(s) 121, 249, 483
Bst4CI ACNGT 2 cut(s) 1370, 1386
BstAPI GCANNNNNTGC 1 cut(s) 1388
BstDEI CTNAG 4 cut(s) 75, 171, 327, 1122
BstDSI CCRYGG 1 cut(s) 775
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 382, 796
BstH2I RGCGCY 2 cut(s) 66, 1587
BstHHI GCGC 2 cut(s) 65, 1586
BstKTI GATC 5 cut(s) 144, 930, 1021, 1141, 1216
BstMAI GTCTC 3 cut(s) 410, 620, 1235
BstMBI GATC 5 cut(s) 141, 927, 1018, 1138, 1213
BstNI CCWGG 3 cut(s) 121, 249, 483
BstNSI RCATGY 3 cut(s) 447, 1292, 1571
BstSCI CCNGG 5 cut(s) 119, 247, 481, 1504, 1505
BstSFI CTRYAG 1 cut(s) 1155
BstSLI GKGCMC 2 cut(s) 255, 784
BstV1I GCAGC 9 cut(s) 217, 256, 404, 470, 677, 720, 835, 982, 1337
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 3 cut(s) 141, 927, 1018
BstXI CCANNNNNNTGG 1 cut(s) 746
BstYI RGATCY 3 cut(s) 141, 927, 1018
Bsu15I ATCGAT 1 cut(s) 887
BsuRI GGCC 2 cut(s) 367, 773
BsuTUI ATCGAT 1 cut(s) 887
BtgI CCRYGG 1 cut(s) 775
BtsCI GGATG 2 cut(s) 382, 796
BtsIMutI CAGTG 3 cut(s) 1104, 1382, 1593
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 2 cut(s) 316, 1216
CfoI GCGC 2 cut(s) 65, 1586
Cfr13I GGNCC 2 cut(s) 365, 772
Cfr9I CCCGGG 1 cut(s) 1505
ClaI ATCGAT 1 cut(s) 887
Csp6I GTAC 3 cut(s) 438, 554, 562
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviQI GTAC 3 cut(s) 438, 554, 562
DdeI CTNAG 4 cut(s) 75, 171, 327, 1122
DpnI GATC 5 cut(s) 143, 929, 1020, 1140, 1215
DpnII GATC 5 cut(s) 141, 927, 1018, 1138, 1213
DrdI GACNNNNNNGTC 2 cut(s) 121, 599
DseDI GACNNNNNNGTC 2 cut(s) 121, 599
Ecl136II GAGCTC 1 cut(s) 1004
Eco130I CCWWGG 3 cut(s) 132, 775, 1270
Eco24I GRGCYC 1 cut(s) 1006
Eco31I GGTCTC 1 cut(s) 1235
Eco32I GATATC 1 cut(s) 1222
Eco47III AGCGCT 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 1004
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 1505
EcoICRI GAGCTC 1 cut(s) 1004
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoRI GAATTC 3 cut(s) 450, 508, 811
EcoRII CCWGG 3 cut(s) 119, 247, 481
EcoRV GATATC 1 cut(s) 1222
EcoT14I CCWWGG 3 cut(s) 132, 775, 1270
EcoT22I ATGCAT 2 cut(s) 1253, 1426
EcoT38I GRGCYC 1 cut(s) 1006
ErhI CCWWGG 3 cut(s) 132, 775, 1270
Esp3I CGTCTC 1 cut(s) 620
FaqI GGGAC 1 cut(s) 605
FauNDI CATATG 1 cut(s) 804
FokI GGATG 2 cut(s) 389, 783
FriOI GRGCYC 1 cut(s) 1006
GlaI GCGC 2 cut(s) 64, 1585
GsaI CCCAGC 1 cut(s) 1530
GsuI CTGGAG 2 cut(s) 504, 1617
HaeII RGCGCY 2 cut(s) 66, 1587
HaeIII GGCC 2 cut(s) 367, 773
HapII CCGG 2 cut(s) 359, 1506
HhaI GCGC 2 cut(s) 65, 1586
Hin6I GCGC 2 cut(s) 63, 1584
HinP1I GCGC 2 cut(s) 63, 1584
HindIII AAGCTT 3 cut(s) 1114, 1298, 1548
HinfI GANTC 5 cut(s) 278, 751, 1411, 1510, 1607
HpaII CCGG 2 cut(s) 359, 1506
Hpy166II GTNNAC 3 cut(s) 908, 1232, 1366
Hpy188I TCNGA 3 cut(s) 162, 1296, 1606
Hpy188III TCNNGA 7 cut(s) 77, 317, 335, 359, 933, 1022, 1217
Hpy8I GTNNAC 3 cut(s) 908, 1232, 1366
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 6 cut(s) 100, 202, 356, 647, 950, 1354
HpyCH4III ACNGT 2 cut(s) 1370, 1386
HpyF3I CTNAG 4 cut(s) 75, 171, 327, 1122
HspAI GCGC 2 cut(s) 63, 1584
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 5 cut(s) 141, 927, 1018, 1138, 1213
LmnI GCTCC 2 cut(s) 1483, 1598
Lsp1109I GCAGC 9 cut(s) 217, 256, 404, 470, 677, 720, 835, 982, 1337
LweI GCATC 7 cut(s) 367, 926, 982, 992, 1327, 1346, 1411
MaeIII GTNAC 3 cut(s) 112, 196, 607
MalI GATC 5 cut(s) 143, 929, 1020, 1140, 1215
MboI GATC 5 cut(s) 141, 927, 1018, 1138, 1213
MboII GAAGA 5 cut(s) 66, 305, 965, 1028, 1611
MfeI CAATTG 2 cut(s) 731, 1134
MflI RGATCY 3 cut(s) 141, 927, 1018
MhlI GDGCHC 3 cut(s) 255, 784, 1006
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 7 cut(s) 80, 254, 359, 428, 763, 1082, 1204
Mph1103I ATGCAT 2 cut(s) 1253, 1426
MroI TCCGGA 1 cut(s) 358
MseI TTAA 2 cut(s) 536, 1398
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 3 cut(s) 218, 524, 671
MspI CCGG 2 cut(s) 359, 1506
MspR9I CCNGG 5 cut(s) 121, 249, 483, 1506, 1507
MunI CAATTG 2 cut(s) 731, 1134
MvaI CCWGG 3 cut(s) 121, 249, 483
NciI CCSGG 2 cut(s) 1506, 1507
NcoI CCATGG 1 cut(s) 775
NdeI CATATG 1 cut(s) 804
NdeII GATC 5 cut(s) 141, 927, 1018, 1138, 1213
NlaIV GGNNCC 1 cut(s) 425
NmuCI GTSAC 2 cut(s) 112, 607
NsiI ATGCAT 2 cut(s) 1253, 1426
NspI RCATGY 3 cut(s) 447, 1292, 1571
PagI TCATGA 2 cut(s) 316, 1216
PciI ACATGT 2 cut(s) 443, 1567
PfeI GAWTC 5 cut(s) 278, 751, 1411, 1510, 1607
PscI ACATGT 2 cut(s) 443, 1567
PsiI TTATAA 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 1006
Psp6I CCWGG 3 cut(s) 119, 247, 481
PspFI CCCAGC 1 cut(s) 1526
PspGI CCWGG 3 cut(s) 119, 247, 481
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 2 cut(s) 365, 772
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 3 cut(s) 141, 927, 1018
PvuII CAGCTG 2 cut(s) 218, 524
RsaI GTAC 3 cut(s) 439, 555, 563
RsaNI GTAC 3 cut(s) 438, 554, 562
RseI CAYNNNNRTG 1 cut(s) 744
SacI GAGCTC 1 cut(s) 1006
SaqAI TTAA 2 cut(s) 536, 1398
Sau3AI GATC 5 cut(s) 141, 927, 1018, 1138, 1213
Sau96I GGNCC 2 cut(s) 365, 772
ScrFI CCNGG 5 cut(s) 121, 249, 483, 1506, 1507
SduI GDGCHC 3 cut(s) 255, 784, 1006
SfaNI GCATC 7 cut(s) 367, 926, 982, 992, 1327, 1346, 1411
SfcI CTRYAG 1 cut(s) 1155
SmaI CCCGGG 1 cut(s) 1507
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
SpeI ACTAGT 1 cut(s) 959
SsiI CCGC 2 cut(s) 669, 1147
SspI AATATT 1 cut(s) 540
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 5 cut(s) 119, 247, 481, 1504, 1505
StyI CCWWGG 3 cut(s) 132, 775, 1270
TaaI ACNGT 2 cut(s) 1370, 1386
TaqI TCGA 5 cut(s) 265, 887, 1165, 1340, 1455
TatI WGTACW 1 cut(s) 561
TauI GCSGC 2 cut(s) 671, 1150
TfiI GAWTC 5 cut(s) 278, 751, 1411, 1510, 1607
Tru1I TTAA 2 cut(s) 536, 1398
Tru9I TTAA 2 cut(s) 536, 1398
TscAI CASTG 3 cut(s) 1104, 1389, 1600
TseFI GTSAC 2 cut(s) 112, 607
TseI GCWGC 9 cut(s) 230, 269, 392, 458, 665, 708, 823, 995, 1325
Tsp45I GTSAC 2 cut(s) 112, 607
TspDTI ATGAA 6 cut(s) 11, 305, 667, 785, 1203, 1212
TspMI CCCGGG 1 cut(s) 1505
TspRI CASTG 3 cut(s) 1104, 1389, 1600
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 4 cut(s) 450, 508, 811, 1200
XbaI TCTAGA 1 cut(s) 932
XceI RCATGY 3 cut(s) 447, 1292, 1571
XmaI CCCGGG 1 cut(s) 1505
Zsp2I ATGCAT 2 cut(s) 1253, 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.