RH4DG074600

Arginine

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0015592
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG074600.1

Sequence Viewer

Length: 1668 bp
ATGTTCAGTGTTTCTGTGTTCTCAGCTTCCTCAGACCTCAGTTTTCATTTGGGTTTTAGAAATAACTGGACTTGTGGAAGACCAAGCGCTTCTCTCTCTCAGGAAAGTAGCAATTTAGAGCCTAGAAAGAAGGAAGTGACGGCCAGGTCTGCCACCAAGGATAAGATCTTACTTTCTAGCTCTCCAACGACTTCTCAGCAACAGAACCCCACTCCACTTGTTACTGCCTTGAAGGCTTCAGCTGAACAAAATGCTGCTACCTTTCACTTTCCTGGGCACAACAGAGGTCGAGCTGCACCAGATTCTATAACTGAACTTATTGGTCTAAACCCTTTTCTTCATGACTTACCTGAGCTTCCTGAACTTGACAGCCTCTTTTCTCCGGAAGGGCCAATTTTAGATGCACAACAACAGGCAGCCAAACTCTTTGGCTCATTGGAGACATGGTTCCTTGTAGGAGGTACGACATGTGGAATTCAAGCAGCCATTATGGCTACTTGTTCCCCTGGAGATATTTTAGTTCTCCCTCGGAATTCCCATATATCAGCTGTATCTGCTTTAATATTGTCTGGTGCAGTACCCAAGTACATTATCCCTGATTATAATTTTGACTGGGACATTGCTGTCGGGGTCACTCCATCACAGGTGGAGACGGCTATCAAGGAAGTGGAGAAAGAAGGGCAAAAGGCAGCCGCTGTTTTCATCACTTCCCCAACATATCATGGTATATGCAGCAACTTGAGCGAGATAACCCAATTGTGCCATTCTCATGGGATTCCTGTAATTGTTGATGAGGCCCATGGGGCACATTTGGGATTTCATCCCCATATGCCGAATTCAGCCATGCAGCAAGGTGCTGATATAGCTGTCCAATCCACTCACAAGGTTCTTTGCTCTCTCACACAATCATCGATGTTGCACTTGTCAGGTAAACTTGTAGATAGAGAAAAGATTTCTAGATGCCTTCAAACACTTCAAAGCACTAGTCCTAGTTATCTTCTTTTGGCATCATTAGATGCTGCTAGAGCTCAAATTAGTGAAGATCCTGAAACTATTTTTGAAAGAGCATTGCAACTGGCTATTGAAGCTAGGAATATGTTGAGAAAGACTAGAGGTATTTCAGTGCTTGATGTTTCAAGCTTCCCTAAGTTCCCTGCAATTGATCCTTTGCGGCTTACTATAGGATTTCGACAGCTTGGCTTGTCTGGTTATGAAGCTGATGAAATTCTGTATGAGGATCATGATATCATTTGTGAACTTGTTGAGACCCAATGCATTACTTTTGTAATTACCCTTGGAACTTGCAGAGAGCATGTTCAGAAGCTTGTATCAGGCATAAAGCATCTAGCAGCCACTTCTGCATCGACTTGTGCTGATAAAAGGAAGGTGGATGGCGATAATCTTGCACCATTTGCAGATATTAAAACTAGCTTGATTCCTAGAGATGCATTTTTTAGTGGTAAAAGGAGAGTGAGTATCGAAAAGAGCTTGGGTGAAGTTTGTGGGGAGCTTATATGTCCATACCCACCTGGGATTCCAGTATTGATTCCTGGGGAGATTATCACAAAGAAAGCTTTGGATTATCTGCTACATGTTAGAAGCCAGGGCGCTGTCATCACTGGAGCTTCTGATTCCCAACTTTCTTCCATAATTGTCTGCAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OKR_DC_1 OKR_DC_1_C

Protein Analysis

555

Amino Acids

59.91

Weight (kDa)

5.99

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OKR_DC_1 PF01276 71 - 376 6.7e-71 Orn/Lys/Arg decarboxylase, major domain
Aminotran_1_2 PF00155 134 - 328 9.8e-11 Aminotransferase class I and II
Beta_elim_lyase PF01212 134 - 298 5.9e-07 Beta-eliminating lyase
Aminotran_5 PF00266 148 - 297 6.5e-06 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 155 - 269 2.6e-07 DegT/DnrJ/EryC1/StrS aminotransferase family
SepSecS PF05889 171 - 297 2.7e-06 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
OKR_DC_1_C PF03711 489 - 534 2.2e-08 Orn/Lys/Arg decarboxylase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06230 FvH4_4g06230 FvH4_4g06230
malus_domestica MD16G1239400.v1.1
prunus_persica Prupe.1G065500_v2.0.a1
pyrus_communis pycom16g20030
rosa_chinensis RchiOBHm_Chr4g0397951
rosa_laevigata RLG00000009394
rosa_multiflora Rmu_sc0000361.1_g000052 Rmu_sc0001074.1_g000007
rosa_roxburghii Rroxscaffold_5G00342850
rosa_rugosa Rorug04G0004800
rosa_samantha Rh4AG081100 Rh4DG074600
rosa_wichuraiana Rw0G020270 Rw4G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AasI GACNNNNNNGTC 2 cut(s) 145, 623
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 2 cut(s) 693, 1171
AclWI GGATC 3 cut(s) 1037, 1157, 1245
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 4 cut(s) 474, 532, 835, 1224
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 3 cut(s) 463, 579, 587
AfeI AGCGCT 1 cut(s) 88
AflIII ACRYGT 2 cut(s) 467, 1591
AgsI TTSAA 7 cut(s) 232, 479, 968, 977, 1061, 1085, 1137
AhlI ACTAGT 1 cut(s) 983
AjnI CCWGG 6 cut(s) 143, 271, 505, 1528, 1549, 1602
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
Alw21I GWGCWC 1 cut(s) 1030
Alw26I GTCTC 3 cut(s) 434, 644, 1259
AlwI GGATC 3 cut(s) 1037, 1157, 1245
AlwNI CAGNNNCTG 1 cut(s) 695
Aor13HI TCCGGA 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 88
AoxI GGCC 3 cut(s) 141, 389, 795
ApeKI GCWGC 9 cut(s) 254, 293, 416, 482, 689, 732, 847, 1019, 1349
ApoI RAATTY 4 cut(s) 474, 532, 835, 1224
ArsI GACNNNNNNTTYG 2 cut(s) 970, 1002
AspLEI GCGC 2 cut(s) 89, 1610
AspS9I GGNCC 2 cut(s) 389, 796
AsuHPI GGTGA 1 cut(s) 1505
BaeGI GKGCMC 2 cut(s) 279, 808
BanII GRGCYC 1 cut(s) 1030
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 1030
BbvI GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
BccI CCATC 2 cut(s) 646, 1385
BceAI ACGGC 2 cut(s) 156, 669
BcgI CGANNNNNNTGC 2 cut(s) 1385, 1419
BciT130I CCWGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
BcoDI GTCTC 3 cut(s) 434, 644, 1259
BcuI ACTAGT 1 cut(s) 983
BfmI CTRYAG 1 cut(s) 1179
BfoI RGCGCY 2 cut(s) 90, 1611
BglI GCCNNNNNGGC 3 cut(s) 233, 491, 803
BglII AGATCT 1 cut(s) 165
Bme1390I CCNGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
BmgT120I GGNCC 2 cut(s) 389, 796
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 7 cut(s) 391, 950, 1006, 1016, 1351, 1370, 1435
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 528, 1641
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 760
Bsa29I ATCGAT 1 cut(s) 911
BsaI GGTCTC 1 cut(s) 1259
BsaJI CCNNGG 9 cut(s) 156, 272, 505, 527, 799, 1294, 1529, 1550, 1603
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 1459, 1489
Bse1I ACTGG 5 cut(s) 71, 617, 1080, 1538, 1624
Bse3DI GCAATG 2 cut(s) 618, 1067
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
BseCI ATCGAT 1 cut(s) 911
BseDI CCNNGG 9 cut(s) 156, 272, 505, 527, 799, 1294, 1529, 1550, 1603
BseGI GGATG 2 cut(s) 820, 1396
BseMI GCAATG 2 cut(s) 618, 1067
BseMII CTCAG 6 cut(s) 36, 45, 52, 113, 209, 342
BseNI ACTGG 5 cut(s) 71, 617, 1080, 1538, 1624
BseSI GKGCMC 2 cut(s) 279, 808
BseXI GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
BsgI GTGCAG 2 cut(s) 279, 594
BshFI GGCC 3 cut(s) 143, 391, 797
BshVI ATCGAT 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 1030
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 629
BsmAI GTCTC 3 cut(s) 434, 644, 1259
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 3 cut(s) 143, 391, 797
Bso31I GGTCTC 1 cut(s) 1259
Bsp1286I GDGCHC 3 cut(s) 279, 808, 1030
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 4 cut(s) 165, 1042, 1162, 1237
Bsp19I CCATGG 1 cut(s) 799
BspACI CCGC 2 cut(s) 693, 1171
BspANI GGCC 3 cut(s) 143, 391, 797
BspCNI CTCAG 6 cut(s) 35, 44, 51, 112, 208, 343
BspDI ATCGAT 1 cut(s) 911
BspEI TCCGGA 1 cut(s) 382
BspHI TCATGA 2 cut(s) 340, 1240
BspLI GGNNCC 1 cut(s) 449
BspPI GGATC 3 cut(s) 1037, 1157, 1245
BspTNI GGTCTC 1 cut(s) 1259
BsrDI GCAATG 2 cut(s) 618, 1067
BsrI ACTGG 5 cut(s) 71, 617, 1080, 1538, 1624
BssECI CCNNGG 9 cut(s) 156, 272, 505, 527, 799, 1294, 1529, 1550, 1603
BssMI GATC 4 cut(s) 165, 1042, 1162, 1237
BssT1I CCWWGG 3 cut(s) 156, 799, 1294
Bst2UI CCWGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
BstAPI GCANNNNNTGC 1 cut(s) 1412
BstDEI CTNAG 7 cut(s) 22, 31, 38, 99, 195, 351, 1146
BstDSI CCRYGG 1 cut(s) 799
BstF5I GGATG 2 cut(s) 820, 1396
BstH2I RGCGCY 2 cut(s) 90, 1611
BstHHI GCGC 2 cut(s) 89, 1610
BstKTI GATC 4 cut(s) 168, 1045, 1165, 1240
BstMAI GTCTC 3 cut(s) 434, 644, 1259
BstMBI GATC 4 cut(s) 165, 1042, 1162, 1237
BstNI CCWGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
BstNSI RCATGY 3 cut(s) 471, 1316, 1595
BstSCI CCNGG 6 cut(s) 143, 271, 505, 1528, 1549, 1602
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 2 cut(s) 279, 808
BstV1I GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 2 cut(s) 165, 1042
BstXI CCANNNNNNTGG 1 cut(s) 770
BstYI RGATCY 2 cut(s) 165, 1042
Bsu15I ATCGAT 1 cut(s) 911
BsuRI GGCC 3 cut(s) 143, 391, 797
BsuTUI ATCGAT 1 cut(s) 911
BtgI CCRYGG 1 cut(s) 799
BtsCI GGATG 2 cut(s) 820, 1396
BtsIMutI CAGTG 3 cut(s) 13, 1128, 1617
CaiI CAGNNNCTG 1 cut(s) 695
CciI TCATGA 2 cut(s) 340, 1240
CfoI GCGC 2 cut(s) 89, 1610
Cfr13I GGNCC 2 cut(s) 389, 796
ClaI ATCGAT 1 cut(s) 911
Csp6I GTAC 3 cut(s) 462, 578, 586
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviQI GTAC 3 cut(s) 462, 578, 586
DdeI CTNAG 7 cut(s) 22, 31, 38, 99, 195, 351, 1146
DpnI GATC 4 cut(s) 167, 1044, 1164, 1239
DpnII GATC 4 cut(s) 165, 1042, 1162, 1237
DrdI GACNNNNNNGTC 2 cut(s) 145, 623
DseDI GACNNNNNNGTC 2 cut(s) 145, 623
EaeI YGGCCR 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 1028
Eco130I CCWWGG 3 cut(s) 156, 799, 1294
Eco24I GRGCYC 1 cut(s) 1030
Eco31I GGTCTC 1 cut(s) 1259
Eco32I GATATC 1 cut(s) 1246
Eco47III AGCGCT 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 1028
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 1028
EcoRI GAATTC 3 cut(s) 474, 532, 835
EcoRII CCWGG 6 cut(s) 143, 271, 505, 1528, 1549, 1602
EcoRV GATATC 1 cut(s) 1246
EcoT14I CCWWGG 3 cut(s) 156, 799, 1294
EcoT22I ATGCAT 2 cut(s) 1277, 1450
EcoT38I GRGCYC 1 cut(s) 1030
ErhI CCWWGG 3 cut(s) 156, 799, 1294
Esp3I CGTCTC 1 cut(s) 644
FaqI GGGAC 1 cut(s) 629
FauNDI CATATG 1 cut(s) 828
FokI GGATG 2 cut(s) 807, 1403
FriOI GRGCYC 1 cut(s) 1030
GlaI GCGC 2 cut(s) 88, 1609
GsuI CTGGAG 2 cut(s) 528, 1641
HaeII RGCGCY 2 cut(s) 90, 1611
HaeIII GGCC 3 cut(s) 143, 391, 797
HapII CCGG 1 cut(s) 383
HhaI GCGC 2 cut(s) 89, 1610
Hin6I GCGC 2 cut(s) 87, 1608
HinP1I GCGC 2 cut(s) 87, 1608
HindIII AAGCTT 3 cut(s) 1138, 1322, 1572
HinfI GANTC 6 cut(s) 302, 775, 1435, 1534, 1546, 1631
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 1505
Hpy166II GTNNAC 2 cut(s) 932, 1256
Hpy188I TCNGA 4 cut(s) 34, 531, 1320, 1630
Hpy188III TCNNGA 7 cut(s) 101, 341, 359, 383, 957, 1046, 1241
Hpy8I GTNNAC 2 cut(s) 932, 1256
HpyAV CCTTC 6 cut(s) 124, 226, 380, 671, 974, 1378
HpyF3I CTNAG 7 cut(s) 22, 31, 38, 99, 195, 351, 1146
HspAI GCGC 2 cut(s) 87, 1608
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 165, 1042, 1162, 1237
LmnI GCTCC 2 cut(s) 1507, 1622
Lsp1109I GCAGC 9 cut(s) 241, 280, 428, 494, 701, 744, 859, 1006, 1361
LweI GCATC 7 cut(s) 391, 950, 1006, 1016, 1351, 1370, 1435
MaeIII GTNAC 3 cut(s) 136, 220, 631
MalI GATC 4 cut(s) 167, 1044, 1164, 1239
MboI GATC 4 cut(s) 165, 1042, 1162, 1237
MboII GAAGA 5 cut(s) 90, 329, 989, 1052, 1635
MfeI CAATTG 2 cut(s) 755, 1158
MflI RGATCY 2 cut(s) 165, 1042
MhlI GDGCHC 3 cut(s) 279, 808, 1030
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 9 cut(s) 40, 47, 278, 383, 452, 537, 787, 1106, 1228
Mph1103I ATGCAT 2 cut(s) 1277, 1450
MroI TCCGGA 1 cut(s) 382
MseI TTAA 2 cut(s) 560, 1422
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 3 cut(s) 242, 548, 695
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
MunI CAATTG 2 cut(s) 755, 1158
MvaI CCWGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
NcoI CCATGG 1 cut(s) 799
NdeI CATATG 1 cut(s) 828
NdeII GATC 4 cut(s) 165, 1042, 1162, 1237
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 2 cut(s) 136, 631
NsiI ATGCAT 2 cut(s) 1277, 1450
NspI RCATGY 3 cut(s) 471, 1316, 1595
PagI TCATGA 2 cut(s) 340, 1240
PciI ACATGT 2 cut(s) 467, 1591
PfeI GAWTC 6 cut(s) 302, 775, 1435, 1534, 1546, 1631
PscI ACATGT 2 cut(s) 467, 1591
PsiI TTATAA 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 1030
Psp6I CCWGG 6 cut(s) 143, 271, 505, 1528, 1549, 1602
PspGI CCWGG 6 cut(s) 143, 271, 505, 1528, 1549, 1602
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 2 cut(s) 389, 796
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 2 cut(s) 165, 1042
PvuII CAGCTG 2 cut(s) 242, 548
RsaI GTAC 3 cut(s) 463, 579, 587
RsaNI GTAC 3 cut(s) 462, 578, 586
RseI CAYNNNNRTG 1 cut(s) 768
SacI GAGCTC 1 cut(s) 1030
SaqAI TTAA 2 cut(s) 560, 1422
Sau3AI GATC 4 cut(s) 165, 1042, 1162, 1237
Sau96I GGNCC 2 cut(s) 389, 796
ScrFI CCNGG 6 cut(s) 145, 273, 507, 1530, 1551, 1604
SduI GDGCHC 3 cut(s) 279, 808, 1030
SfaNI GCATC 7 cut(s) 391, 950, 1006, 1016, 1351, 1370, 1435
SfcI CTRYAG 1 cut(s) 1179
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SpeI ACTAGT 1 cut(s) 983
SsiI CCGC 2 cut(s) 693, 1171
SspI AATATT 1 cut(s) 564
SstI GAGCTC 1 cut(s) 1030
StyD4I CCNGG 6 cut(s) 143, 271, 505, 1528, 1549, 1602
StyI CCWWGG 3 cut(s) 156, 799, 1294
TaqI TCGA 5 cut(s) 289, 911, 1189, 1364, 1479
TatI WGTACW 1 cut(s) 585
TauI GCSGC 2 cut(s) 695, 1174
TfiI GAWTC 6 cut(s) 302, 775, 1435, 1534, 1546, 1631
Tru1I TTAA 2 cut(s) 560, 1422
Tru9I TTAA 2 cut(s) 560, 1422
TscAI CASTG 3 cut(s) 13, 1128, 1624
TseFI GTSAC 2 cut(s) 136, 631
TseI GCWGC 9 cut(s) 254, 293, 416, 482, 689, 732, 847, 1019, 1349
Tsp45I GTSAC 2 cut(s) 136, 631
TspDTI ATGAA 6 cut(s) 35, 329, 691, 809, 1227, 1236
TspRI CASTG 3 cut(s) 13, 1128, 1624
XapI RAATTY 4 cut(s) 474, 532, 835, 1224
XbaI TCTAGA 1 cut(s) 956
XceI RCATGY 3 cut(s) 471, 1316, 1595
Zsp2I ATGCAT 2 cut(s) 1277, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.