Rorug02G0010300

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
919966 .. 926450
6485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0010300.1

Sequence Viewer

Length: 2739 bp
ATGGCCACCAAACGCAAGTCGAAGCGATCTCCGGCTTCTTCTTCCGCCGCGAAGAAGCTGAAGCAGGGGGAGAAAGATGTCTTATTGCCGGAGAGTAGTGAAATCAAAACCGAAACCTCAACGGCGACGAAGGCGAAGCCGAAGCGATCTAAGGCTGGATCTTCATCCGCATCTGCGAAGTTGAAGGAGCCGGCGGTGGTGGAGGAAGAGTCGGTACTGGAGAGTACCGAAACGGCCGAGAAGGTTTCGGAGAGTAGCGAAACGGCTACAATGGAGGCGAGTGCGCCGAAGTCGAGGAAGTACAGTAAGAAGGAGAGTAAGGAGAGCGGTGGTTCTGAGGCTAATAATGTGGCTGATGAGGATGTGGTGATGTCTGAGGCTAGGTTTCTCGGTGAGCCGGTTGAACCGGAGGAGGCTCGCCGGAGATGGCCCCACCGATATGCTGCGCCTCCGACTCAGAAGAAGGCAAACAACTCCAACGATGATGAAGATTTTCTTGAGGGTCGTCGACACTTCACAAAGGCAGAGGTTGATGGATGTATCTATGATCTTTATGATGATGCACATGTAAAAGCCGGCAAAGGAGAACAACCTTACATTTGTAAAATTATAGAGATGTTTGAGGCAGTTGATGGGCTACCCTATTTTACTGCTCAGTGGTTCTACAGAGCGAAAGATACTGTCATAGAAGGTTGCTTCGATATTGATTCAAGGCGTGTATTTTATTCAGATGTTACAAATTACAATGAGTTGGAATGTCTTCTTGGGAAACTGGATATTGCGAGATTCGGTTTAGATATTGACCCTGATGTAAAGTGCAAACTGATTGAGAGCTGTACCTATTATTGCGACACTAAATATCTGTTGCCTTATTCCACCTTTGTCAACTTCCCACCTGAAAATGTGCAGGCTGGAAGTGATAACTCATCAACAATTTCCAGTGAGATTGACATTAGCTGTTCTCGTGCGGTTAACTCGGAACTTGAAAAAACTTCCACAGTTGTGGAGCAAGGCAAACCAGAAGCAACTGTACTTGACTTGTATTCTGGTTGTGGAGGGATGTCTACTGGCCTATGCCTTGGGGCAAACTCGGCAAACCTAAATCTTGTTACGAGATGGGCTGTGGATCTGAATGAACATGCTATAAAAAGTCTGAAGATAAACCATGAAGAAACTGAGGTTCGGGTAGAATCTGCGGATGATTTTCTCTCATTGCTGAAAAAGTGGAAGGGACTTTGTGTTCATTTTAAAGTGGTTAAACCTGATGGTTCAGAAACACCGTTTAGTGTATTCACAACAAAAGATGCCAAAGAGGAAGAGGAGGATGTGGAGGCAGAGGATGATGATGATGCAGAATCTGAAGTTTATGAAGTTGAAAAAATACTTGGTATACGTTATGGAAAAGCCAAAAATGGAGAAGAGAAGGAATTGTTGTTTAAGGTCAAATGGAAAGGATATGGAGCTGAGTATGATACTTGGGAGCCCCTAGATTTACTAACGGGTTGTGAGGAGAGCATACAGGAATTTGTTTCTCATGTATACCAGTCCAAACTGTTGCCATTACCTGGTGATGTGGATGTTGTGTGTGGTGGTCCTCCATGCCAAGGAATTAGTGGTTTCAATAGGTTCAGGAACTCTGAAAGTCCATTAGATGACGAGAAGAACAAGCAATTGGCTGTCTTCATGGACATAGTAGATTATCTAAAGCCCAAGTATGTGCTGATGGAAAATGTAGTGGACCTTTTGAAATTTGCTGATGGGTTTTTAGGACGGTATGCTTTGGGGAGGTTAGTTGGAATGAACTACCAAGCAAGGATGGGTATGATGTGCGCAGGTGCATATGGTCTACCTCAATTCCGTATGCGGGTATTTTATTGGGGTGCCCTTCCTACTGAGAGGTTGCCTCAATTCCCACTGCCAACCCATGATGTAGTGTTTAGGGGTCAGATTCCTACTAAATGGGAGCAAAACTGTGTTGCTTACAATGAAGGCCATGATCATACATTGGGAAGAAAGCTTTTGTTGGAGGATGCACTCTCAGATCTTCCCGAGGTTGGAAACAATGAAAACCGTGACGTAATGCCTTATGGAAAGCAACCTCAGACAGAGTTTCAGAAATTTATTCGGCTTAGCAAAGACGGTTTTCTGGGGACTTCAAAGAAGTTGCACTCAAATGAGATGCTTTATGATCACCGCCCTCTGAAATTGAATGATGATGATCATGAACGTGTTTGTCGTGTCCCTAAGGAAAAGGGTGCGAACTTTAGGAATCTACCTGGGGTTCTTGTTGGTGCTGATAATAAAGTAATGTGGGATCCAGAAGTAGAGAGGGTTTTATTAAAATCTGGGAAACCTTTGGTCCCTGATTATGCAATGTCATTTGTGAAAGGACATTCATCAAAACCTTTTGGACGTTTATGGTGGGATGAGATTGTTTCCACAGTTGTTACCCGGGCGGAGCCACATAATCAGGCAATTTTGCATCCTCAACAAGATCGGGTATTGACAGTTCGTGAAAATGCAAGACTACAAGGATTTCCTGACTACTACCAGCTTTCTGGTCCAATCAAAGAGAGATATATGCAAATTGGAAATGCTGTAGCTGTTCCTGTTTCACGTGCACTGGGTTACACATTAGGTTTGGCATATAAGGGTTCTGCTGGTGAGGATTCTTTGTTTGAGCTGCCCAAAGAAATGCATTTGCCTAACGGATGTTTTGAAGATGGAGATTATGTTTGA

Protein Analysis

912

Amino Acids

102.27

Weight (kDa)

5.19

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 194 - 262 1.9e-07 BAH domain
Chromo PF00385 456 - 511 2.7e-14 Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase PF00145 520 - 878 2.1e-32 C-5 cytosine-specific DNA methylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24495 AT3G24495
fragaria_vesca FvH4_1g05130 FvH4_1g05130
malus_domestica MD15G1187500.v1.1
prunus_persica Prupe.7G228900_v2.0.a1
pyrus_communis pycom15g16830
rosa_chinensis RchiOBHm_Chr2g0090761
rosa_laevigata RLG00000016141
rosa_multiflora Rmu_ssc0000367.1_g000007
rosa_roxburghii Rroxscaffold_2G00150840
rosa_rugosa Rorug02G0010300
rosa_samantha Rh2AG056300 Rh2BG055000 Rh2CG057400 Rh2DG055900
rosa_wichuraiana Rw2G004620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1823
Acc16I TGCGCA 1 cut(s) 1831
Acc36I ACCTGC 1 cut(s) 1823
AccB1I GGYRCC 1 cut(s) 1880
AccB7I CCANNNNNTGG 1 cut(s) 1565
AccBSI CCGCTC 1 cut(s) 327
AccI GTMKAC 5 cut(s) 508, 1064, 1390, 1539, 1846
AccII CGCG 1 cut(s) 50
AclWI GGATC 4 cut(s) 166, 1134, 2309, 2322
AcoI YGGCCR 2 cut(s) 3, 234
AcsI RAATTY 3 cut(s) 1523, 1748, 2117
AcuI CTGAAG 3 cut(s) 80, 1175, 1380
AcvI CACGTG 1 cut(s) 2618
AfaI GTAC 5 cut(s) 216, 226, 302, 838, 1032
AfiI CCNNNNNNNGG 4 cut(s) 1565, 1604, 1864, 2054
AflIII ACRYGT 2 cut(s) 565, 2227
AjnI CCWGG 2 cut(s) 1564, 2275
AjuI GAANNNNNNNTTGG 6 cut(s) 747, 779, 1368, 1400, 1655, 1687
AleI CACNNNNGTG 1 cut(s) 1001
AloI GAACNNNNNNTCC 2 cut(s) 1224, 1256
AluBI AGCT 8 cut(s) 58, 834, 957, 1463, 2017, 2554, 2603, 2683
AluI AGCT 8 cut(s) 58, 834, 957, 1463, 2017, 2554, 2603, 2683
Alw21I GWGCWC 1 cut(s) 2623
Alw44I GTGCAC 1 cut(s) 2619
AlwI GGATC 4 cut(s) 166, 1134, 2309, 2322
AlwNI CAGNNNCTG 1 cut(s) 1358
Ama87I CYCGRG 2 cut(s) 2048, 2451
AoxI GGCC 5 cut(s) 3, 234, 428, 1069, 1990
ApaLI GTGCAC 1 cut(s) 2619
ApeKI GCWGC 2 cut(s) 443, 2683
ApoI RAATTY 3 cut(s) 1523, 1748, 2117
Asp700I GAANNNNTTC 2 cut(s) 492, 759
AspLEI GCGC 3 cut(s) 286, 448, 1832
AspS9I GGNCC 5 cut(s) 429, 1592, 1738, 2359, 2561
AsuC2I CCSGG 2 cut(s) 2452, 2453
AsuHPI GGTGA 5 cut(s) 379, 404, 1580, 2183, 2675
AvaI CYCGRG 2 cut(s) 2048, 2451
AvaII GGWCC 4 cut(s) 1592, 1738, 2359, 2561
AxyI CCTNAGG 1 cut(s) 2244
BaeGI GKGCMC 2 cut(s) 1885, 2623
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 2314
BanI GGYRCC 1 cut(s) 1880
BanII GRGCYC 1 cut(s) 1485
BarI GAAGNNNNNNTAC 4 cut(s) 198, 230, 1014, 1046
BauI CACGAG 1 cut(s) 963
BbrPI CACGTG 1 cut(s) 2618
BbsI GAAGAC 2 cut(s) 752, 1672
Bbv12I GWGCWC 1 cut(s) 2623
BbvI GCAGC 2 cut(s) 430, 2670
BccI CCATC 9 cut(s) 420, 527, 626, 1110, 1259, 1717, 1751, 1810, 2717
BceAI ACGGC 3 cut(s) 138, 249, 279
BciT130I CCWGG 2 cut(s) 1566, 2277
BclI TGATCA 3 cut(s) 1996, 2188, 2218
BcnI CCSGG 2 cut(s) 2452, 2453
BfaI CTAG 2 cut(s) 381, 1487
BfmI CTRYAG 2 cut(s) 664, 2598
BfuAI ACCTGC 1 cut(s) 1823
BglII AGATCT 1 cut(s) 2041
BisI GCNGC 3 cut(s) 48, 444, 2684
BlpI GCTNAGC 1 cut(s) 2129
BlsI GCNGC 3 cut(s) 49, 445, 2685
Bme1390I CCNGG 4 cut(s) 1566, 2277, 2452, 2453
Bme18I GGWCC 4 cut(s) 1592, 1738, 2359, 2561
BmeT110I CYCGRG 2 cut(s) 2048, 2451
BmgT120I GGNCC 5 cut(s) 429, 1592, 1738, 2359, 2561
BmiI GGNNCC 7 cut(s) 189, 431, 1482, 1882, 2316, 2361, 2460
BmrFI CCNGG 4 cut(s) 1566, 2277, 2452, 2453
BmrI ACTGGG 1 cut(s) 2633
BmsI GCATC 7 cut(s) 179, 550, 1294, 1339, 2020, 2169, 2491
BmuI ACTGGG 1 cut(s) 2633
BpiI GAAGAC 2 cut(s) 752, 1672
BplI GAGNNNNNCTC 2 cut(s) 1888, 1920
BpmI CTGGAG 1 cut(s) 239
Bpu1102I GCTNAGC 1 cut(s) 2129
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 2 cut(s) 2452, 2453
BsaAI YACGTR 1 cut(s) 2618
BsaBI GATNNNNATC 2 cut(s) 163, 2217
BsaJI CCNNGG 5 cut(s) 1078, 1603, 2049, 2276, 2451
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 3 cut(s) 194, 224, 2718
Bsc4I CCNNNNNNNGG 4 cut(s) 1565, 1604, 1864, 2054
Bse118I RCCGGY 3 cut(s) 190, 397, 575
Bse1I ACTGG 6 cut(s) 222, 777, 939, 1072, 1543, 2628
Bse21I CCTNAGG 1 cut(s) 2244
Bse3DI GCAATG 2 cut(s) 1211, 2379
Bse8I GATNNNNATC 2 cut(s) 163, 2217
BseBI CCWGG 2 cut(s) 1566, 2277
BseDI CCNNGG 5 cut(s) 1078, 1603, 2049, 2276, 2451
BseJI GATNNNNATC 2 cut(s) 163, 2217
BseLI CCNNNNNNNGG 4 cut(s) 1565, 1604, 1864, 2054
BseMI GCAATG 2 cut(s) 1211, 2379
BseMII CTCAG 9 cut(s) 327, 366, 470, 668, 1167, 1455, 1884, 2052, 2114
BseNI ACTGG 6 cut(s) 222, 777, 939, 1072, 1543, 2628
BseRI GAGGAG 3 cut(s) 425, 1334, 1523
BseSI GKGCMC 2 cut(s) 1885, 2623
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 430, 2670
BsgI GTGCAG 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 5 cut(s) 5, 236, 430, 1071, 1992
BshNI GGYRCC 1 cut(s) 1880
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 2623
BsiHKCI CYCGRG 2 cut(s) 2048, 2451
BsiSI CCGG 8 cut(s) 32, 89, 191, 398, 407, 421, 576, 2452
BslFI GGGAC 4 cut(s) 1245, 2164, 2225, 2345
BslI CCNNNNNNNGG 4 cut(s) 1565, 1604, 1864, 2054
BsmFI GGGAC 4 cut(s) 1245, 2164, 2225, 2345
BsnI GGCC 5 cut(s) 5, 236, 430, 1071, 1992
BsoBI CYCGRG 2 cut(s) 2048, 2451
Bsp1286I GDGCHC 3 cut(s) 1485, 1885, 2623
Bsp1720I GCTNAGC 1 cut(s) 2129
BspANI GGCC 5 cut(s) 5, 236, 430, 1071, 1992
BspCNI CTCAG 9 cut(s) 328, 367, 469, 667, 1168, 1456, 1885, 2051, 2113
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 2221
BspLI GGNNCC 7 cut(s) 189, 431, 1482, 1882, 2316, 2361, 2460
BspMI ACCTGC 1 cut(s) 1823
BspPI GGATC 4 cut(s) 166, 1134, 2309, 2322
BspT107I GGYRCC 1 cut(s) 1880
BsrBI CCGCTC 1 cut(s) 327
BsrDI GCAATG 2 cut(s) 1211, 2379
BsrFI RCCGGY 3 cut(s) 190, 397, 575
BsrI ACTGG 6 cut(s) 222, 777, 939, 1072, 1543, 2628
BssAI RCCGGY 3 cut(s) 190, 397, 575
BssECI CCNNGG 5 cut(s) 1078, 1603, 2049, 2276, 2451
BssNAI GTATAC 2 cut(s) 1391, 1540
BssSI CACGAG 1 cut(s) 963
BssT1I CCWWGG 2 cut(s) 1078, 1603
Bst1107I GTATAC 2 cut(s) 1391, 1540
Bst2BI CACGAG 1 cut(s) 963
Bst2UI CCWGG 2 cut(s) 1566, 2277
Bst6I CTCTTC 3 cut(s) 201, 1311, 1413
BstBAI YACGTR 1 cut(s) 2618
BstC8I GCNNGC 4 cut(s) 192, 418, 577, 909
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 3 cut(s) 286, 448, 1832
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 131, 1091
BstNI CCWGG 2 cut(s) 1566, 2277
BstNSI RCATGY 2 cut(s) 569, 1142
BstSCI CCNGG 4 cut(s) 1564, 2275, 2450, 2451
BstSFI CTRYAG 2 cut(s) 664, 2598
BstSLI GKGCMC 2 cut(s) 1885, 2623
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 430, 2670
BstV2I GAAGAC 2 cut(s) 752, 1672
BstX2I RGATCY 4 cut(s) 158, 1126, 2041, 2314
BstXI CCANNNNNNTGG 2 cut(s) 1003, 2558
BstYI RGATCY 4 cut(s) 158, 1126, 2041, 2314
BstZ17I GTATAC 2 cut(s) 1391, 1540
BstZI CGGCCG 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 2244
BsuRI GGCC 5 cut(s) 5, 236, 430, 1071, 1992
BtsI GCAGTG 1 cut(s) 1913
BtsIMutI CAGTG 4 cut(s) 662, 946, 1913, 2621
BveI ACCTGC 1 cut(s) 1823
Cac8I GCNNGC 4 cut(s) 192, 418, 577, 909
CaiI CAGNNNCTG 1 cut(s) 1358
CciI TCATGA 1 cut(s) 2221
CfoI GCGC 3 cut(s) 286, 448, 1832
Cfr10I RCCGGY 3 cut(s) 190, 397, 575
Cfr13I GGNCC 5 cut(s) 429, 1592, 1738, 2359, 2561
Cfr9I CCCGGG 1 cut(s) 2451
CsiI ACCWGGT 1 cut(s) 1564
Csp6I GTAC 5 cut(s) 215, 225, 301, 837, 1031
CviAII CATG 9 cut(s) 566, 1139, 1166, 1535, 1599, 1684, 1925, 1994, 2222
CviQI GTAC 5 cut(s) 215, 225, 301, 837, 1031
DraI TTTAAA 1 cut(s) 1249
EaeI YGGCCR 2 cut(s) 3, 234
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 3 cut(s) 201, 1311, 1413
EarI CTCTTC 3 cut(s) 201, 1311, 1413
EciI GGCGGA 2 cut(s) 34, 2471
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 1078, 1603
Eco24I GRGCYC 1 cut(s) 1485
Eco47I GGWCC 4 cut(s) 1592, 1738, 2359, 2561
Eco52I CGGCCG 1 cut(s) 234
Eco57I CTGAAG 3 cut(s) 80, 1175, 1380
Eco72I CACGTG 1 cut(s) 2618
Eco81I CCTNAGG 1 cut(s) 2244
Eco88I CYCGRG 2 cut(s) 2048, 2451
EcoRII CCWGG 2 cut(s) 1564, 2275
EcoT14I CCWWGG 2 cut(s) 1078, 1603
EcoT22I ATGCAT 1 cut(s) 2700
EcoT38I GRGCYC 1 cut(s) 1485
ErhI CCWWGG 2 cut(s) 1078, 1603
FaeI CATG 9 cut(s) 569, 1142, 1169, 1538, 1602, 1687, 1928, 1997, 2225
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 4 cut(s) 1245, 2164, 2225, 2345
FatI CATG 9 cut(s) 565, 1138, 1165, 1534, 1598, 1683, 1924, 1993, 2221
FauI CCCGC 1 cut(s) 1857
FauNDI CATATG 1 cut(s) 1840
FbaI TGATCA 3 cut(s) 1996, 2188, 2218
FblI GTMKAC 5 cut(s) 508, 1064, 1390, 1539, 1846
Fnu4HI GCNGC 3 cut(s) 48, 444, 2684
FriOI GRGCYC 1 cut(s) 1485
Fsp4HI GCNGC 3 cut(s) 48, 444, 2684
FspBI CTAG 2 cut(s) 381, 1487
FspI TGCGCA 1 cut(s) 1831
GlaI GCGC 3 cut(s) 285, 447, 1831
GluI GCNGC 3 cut(s) 48, 444, 2684
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 5 cut(s) 5, 236, 430, 1071, 1992
HapII CCGG 8 cut(s) 32, 89, 191, 398, 407, 421, 576, 2452
HhaI GCGC 3 cut(s) 286, 448, 1832
Hin1II CATG 9 cut(s) 569, 1142, 1169, 1538, 1602, 1687, 1928, 1997, 2225
Hin6I GCGC 3 cut(s) 284, 446, 1830
HinP1I GCGC 3 cut(s) 284, 446, 1830
HincII GTYRAC 3 cut(s) 509, 886, 973
HindII GTYRAC 3 cut(s) 509, 886, 973
HindIII AAGCTT 1 cut(s) 2015
HinfI GANTC 9 cut(s) 209, 454, 707, 786, 1190, 1355, 1948, 2269, 2669
HpaI GTTAAC 1 cut(s) 973
HpaII CCGG 8 cut(s) 32, 89, 191, 398, 407, 421, 576, 2452
HphI GGTGA 5 cut(s) 379, 404, 1580, 2183, 2675
Hpy166II GTNNAC 9 cut(s) 509, 886, 973, 1065, 1391, 1540, 1738, 1847, 2621
Hpy188III TCNNGA 7 cut(s) 497, 1630, 2048, 2222, 2318, 2513, 2540
Hpy8I GTNNAC 9 cut(s) 509, 886, 973, 1065, 1391, 1540, 1738, 1847, 2621
Hpy99I CGWCG 2 cut(s) 130, 510
HpyCH4IV ACGT 5 cut(s) 1393, 2076, 2227, 2413, 2617
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 1091
HpySE526I ACGT 5 cut(s) 1393, 2076, 2227, 2413, 2617
Hsp92II CATG 9 cut(s) 569, 1142, 1169, 1538, 1602, 1687, 1928, 1997, 2225
HspAI GCGC 3 cut(s) 284, 446, 1830
KroI GCCGGC 2 cut(s) 190, 575
KroNI GCCGGC 2 cut(s) 192, 577
Ksp22I TGATCA 3 cut(s) 1996, 2188, 2218
KspAI GTTAAC 1 cut(s) 973
LmnI GCTCC 6 cut(s) 187, 1006, 1460, 1480, 1963, 2458
Lsp1109I GCAGC 2 cut(s) 430, 2670
LweI GCATC 7 cut(s) 179, 550, 1294, 1339, 2020, 2169, 2491
MabI ACCWGGT 1 cut(s) 1564
MaeI CTAG 2 cut(s) 381, 1487
MaeII ACGT 5 cut(s) 1393, 2076, 2227, 2413, 2617
MaeIII GTNAC 5 cut(s) 733, 1108, 2072, 2446, 2627
MbiI CCGCTC 1 cut(s) 327
MfeI CAATTG 1 cut(s) 1670
MflI RGATCY 4 cut(s) 158, 1126, 2041, 2314
MhlI GDGCHC 3 cut(s) 1485, 1885, 2623
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 218, 448
MmeI TCCRAC 6 cut(s) 476, 501, 732, 1774, 2004, 2035
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 2700
MroNI GCCGGC 2 cut(s) 190, 575
MroXI GAANNNNTTC 2 cut(s) 492, 759
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 972, 1248, 1257, 1437, 2339
MslI CAYNNNNRTG 4 cut(s) 438, 1001, 2172, 2226
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 8 cut(s) 32, 89, 191, 398, 407, 421, 576, 2452
MspR9I CCNGG 4 cut(s) 1566, 2277, 2452, 2453
MunI CAATTG 1 cut(s) 1670
MvaI CCWGG 2 cut(s) 1566, 2277
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 131, 1091
NaeI GCCGGC 2 cut(s) 192, 577
NciI CCSGG 2 cut(s) 2452, 2453
NdeI CATATG 1 cut(s) 1840
NgoMIV GCCGGC 2 cut(s) 190, 575
NlaIII CATG 9 cut(s) 569, 1142, 1169, 1538, 1602, 1687, 1928, 1997, 2225
NlaIV GGNNCC 7 cut(s) 189, 431, 1482, 1882, 2316, 2361, 2460
NmeAIII GCCGAG 2 cut(s) 262, 1070
NmuCI GTSAC 1 cut(s) 2072
NsbI TGCGCA 1 cut(s) 1831
NsiI ATGCAT 1 cut(s) 2700
NspI RCATGY 2 cut(s) 569, 1142
OliI CACNNNNGTG 1 cut(s) 1001
PagI TCATGA 1 cut(s) 2221
PaqCI CACCTGC 1 cut(s) 1823
PciI ACATGT 1 cut(s) 565
PcsI WCGNNNNNNNCGW 1 cut(s) 2233
PdiI GCCGGC 2 cut(s) 192, 577
PdmI GAANNNNTTC 2 cut(s) 492, 759
PfeI GAWTC 7 cut(s) 707, 786, 1190, 1355, 1948, 2269, 2669
PflMI CCANNNNNTGG 1 cut(s) 1565
PkrI GCNGC 3 cut(s) 49, 445, 2685
PleI GAGTC 2 cut(s) 217, 448
PmaCI CACGTG 1 cut(s) 2618
PmlI CACGTG 1 cut(s) 2618
PpsI GAGTC 2 cut(s) 217, 448
Ppu21I YACGTR 1 cut(s) 2618
PscI ACATGT 1 cut(s) 565
Psp6I CCWGG 2 cut(s) 1564, 2275
PspCI CACGTG 1 cut(s) 2618
PspGI CCWGG 2 cut(s) 1564, 2275
PspN4I GGNNCC 7 cut(s) 189, 431, 1482, 1882, 2316, 2361, 2460
PspPI GGNCC 5 cut(s) 429, 1592, 1738, 2359, 2561
PsrI GAACNNNNNNTAC 2 cut(s) 2493, 2525
PstNI CAGNNNCTG 1 cut(s) 1358
PsuI RGATCY 4 cut(s) 158, 1126, 2041, 2314
RsaI GTAC 5 cut(s) 216, 226, 302, 838, 1032
RsaNI GTAC 5 cut(s) 215, 225, 301, 837, 1031
RseI CAYNNNNRTG 4 cut(s) 438, 1001, 2172, 2226
SalI GTCGAC 1 cut(s) 507
SaqAI TTAA 5 cut(s) 972, 1248, 1257, 1437, 2339
SatI GCNGC 3 cut(s) 48, 444, 2684
Sau96I GGNCC 5 cut(s) 429, 1592, 1738, 2359, 2561
SchI GAGTC 2 cut(s) 218, 448
ScrFI CCNGG 4 cut(s) 1566, 2277, 2452, 2453
SduI GDGCHC 3 cut(s) 1485, 1885, 2623
SexAI ACCWGGT 1 cut(s) 1564
SfaNI GCATC 7 cut(s) 179, 550, 1294, 1339, 2020, 2169, 2491
SfcI CTRYAG 2 cut(s) 664, 2598
SinI GGWCC 4 cut(s) 1592, 1738, 2359, 2561
SmaI CCCGGG 1 cut(s) 2453
SmiMI CAYNNNNRTG 4 cut(s) 438, 1001, 2172, 2226
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SspMI CTAG 2 cut(s) 381, 1487
StyD4I CCNGG 4 cut(s) 1564, 2275, 2450, 2451
StyI CCWWGG 2 cut(s) 1078, 1603
TaiI ACGT 5 cut(s) 1396, 2079, 2230, 2416, 2620
TaqI TCGA 4 cut(s) 20, 293, 508, 699
TatI WGTACW 2 cut(s) 300, 1030
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 7 cut(s) 707, 786, 1190, 1355, 1948, 2269, 2669
Tru1I TTAA 5 cut(s) 972, 1248, 1257, 1437, 2339
Tru9I TTAA 5 cut(s) 972, 1248, 1257, 1437, 2339
TscAI CASTG 4 cut(s) 662, 946, 1920, 2628
TseFI GTSAC 1 cut(s) 2072
TseI GCWGC 2 cut(s) 443, 2683
Tsp45I GTSAC 1 cut(s) 2072
TspGWI ACGGA 2 cut(s) 1847, 2724
TspMI CCCGGG 1 cut(s) 2451
TspRI CASTG 4 cut(s) 662, 946, 1920, 2628
Van91I CCANNNNNTGG 1 cut(s) 1565
VneI GTGCAC 1 cut(s) 2619
VpaK11BI GGWCC 4 cut(s) 1592, 1738, 2359, 2561
XapI RAATTY 3 cut(s) 1523, 1748, 2117
XceI RCATGY 2 cut(s) 569, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 1610
XmaI CCCGGG 1 cut(s) 2451
XmiI GTMKAC 5 cut(s) 508, 1064, 1390, 1539, 1846
XmnI GAANNNNTTC 2 cut(s) 492, 759
XspI CTAG 2 cut(s) 381, 1487
Zsp2I ATGCAT 1 cut(s) 2700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.