Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014491

Physical Location & Seq

Genomic Coordinates Forward (+)

3976547 .. 3984117

Gene Structure 7571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG055000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3231 bp

ATGCAGCGCCAGAAATCGATCCTCTCCTTCTTCCGGAAACCCTCGCCGGACAAAAGCACCTCCACCGCCGGAGACGACGGCCGTGGAGTTAATCAGTTCGCGGCGAAGGAGCAGGAGCAGGAGCAGAAGCCCGTCGGATCCAATCAGCCTCCGGATCTCGAAGTTCGAGGAACCGACACTCCGCCTGAGAAGGTGCCACGTCAGATTCTGCCGGCGAATTCTGCGAGCCTGACAGACTCTTCGCCTTTCTCTAGTATTATGCATAAGTTTATGAAGGTCGATGACACAAATAAGGCTTCTCAGAGCCACCGGAATGAACCAAATGGTGGTTCCTCTAATGATTGTACGGTATCTGGTAAACTCAATGATACCAATTCCAGTAAGAAAATTAATCGAGGTGCTGTGATGCATATCGAAAGTGACGAGGACATTGCTGGACCAGAAACACCGGGGACACAACGTCTAGTTCCACGTATGAAGCGAATTCAAGAGGAGATTCCTAAGTTTGGGGATAAATTTGGGAGTTCTTTGCCAGATTCTAGCAAAAGATTGAAAGTTCTTGAGGAGCCAACAGTCTTAGACAAGAGCCATGGGGAAGCATCTGATATGGCTAGCAAGTTTGAGTGGCTTGACCCATCCCGAATCAGAGATGCAAATCGCAGAAGGCCTGGTGATCCTCTCTATGACAAAACATCACTTTATATACCACCTGATGCTCTGAAGAAAATGTCGGCATCACAAAGACAATACTGGGATGTCAAGTGTCAGTATATGGATGTTGTGATTTTCTTTAAAGTGGGAAAGTTTTATGAGCTTTATGAACTAGATGCTGAAATTGGCCACAAGGAGCTTGATTGGAAAATGACCTTGAGTGGTGTTGGGAAATGTCGTCAGGTTGGCATCTCTGAAAGTGGGATTGACGATGCTGTTCAAAAGTTGGTTGTCCGTGGGTATAAAGTTGGACGGATAGAGCAGCTGGAAACTTCTGATCAAGTAAAAGCCAGAGGTGCCAAAGCTGTAATTCCAAGAAAATTGGTTCAGGTAGTCACACCATCAACCACAACTGATGGAAATATTGGGCCTGATGCTGTTCATCTTCTTGCAATAAAAGAGGGGAACTCTGGGGTCGACAATGGTTCAGTTGTATATGGGTTTGCTTTTGTTGATTGTTCTGCTTTAAAGTTCTGGATTGGTGCTATCAGTGATGATGCTTCGTGTGCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAAAGAAGTTGTATATGAAAACAGAGGGCTCTCAAAAGAAGCTCAAAAAGCACTGAAAAAGTACTCAACAGGTTCTGCACTGCAATTGACTCCAGTGCAGCCAGTCAATGATTTTATGGATGCTTCTGAAGTTAGTAAATTGATTCAGTTGAAAGGATACTTCAAAGGGTCTTCGAATTCATGGAATCATGGACCTGATGGTGTGGTACACCATGATATAACTTTACCTGCTCTGGGTACACTTATTGACCACCTATCCAGGTTGATGTTAGATGACGTTTTACGCAATGGAGATATATTACCTTACCAAGTTTATAAGGGTTGCCTCAAAATGGATGGACAGACGCTGATAAATCTTGAGATTTTCAGTAATACTGCTGATGGTGGTCCATCAGGTACACTGTATGCATATCTCGATAACTGTGTGACTGCATCTGGTAAGCGGCTTTTGAGGAAGTGGATCTGCCATCCCTTGAAGTCTGTTGAAGCTATTAATAACAGGCTTAATTTGGTTGAAGATCTACTGGCACATCCAGAAATGGTGCCACTTATTGCTCAGTATCTTCGCAAGCTGCCAGACTTAGAGAGGTTGTTTGGACGGGTTAGAGCAACTGTTCAGTCGTCAGCTTCCCTCCTATTGCCATTATTTGGCAAGAAATTACTAAAACAGAGAGTGAAAGTGTTCGGGACTCTTGTGAAAGGCCTCAGATTTGGACTGGATTTGTTAACAGTATTACAAAATGAAGGGCATATAATTGAGCTGTTATTAAAACTATTTAAAGTTCCACGTCTAAGTGGCAGTGATGGGCTTGATCAATATCTTAAACAATTTGAAGCAGCTGTAGATAGTGACTTCCCAAATTACCAGAATCATGATGCAACCGATTCAGATGCTGAAATACTCTTGATTCTAGTCGAGCTATTTATGGAGAAAGCAACTGAGTGGACTGATGTCATACATGCCGTCAACTGTATTGATGTGCTAAGATCTTTTGTAGTTACCGCAAGCTTCCCAAGTGGAGCTATGTCCAGACCTGTTCTTTTGTCTCAATCTCAAAATACAACCTTGAATGGAGAAAATGGAAGTCCTACACTTAATATTAAAGGACTATGGCATCCATTTGCTCTTGGTGAAAATGGTGGACAGCCTGTGCCAAATGATGTAGTTCTAGGTGAAAATACTGATGGCTATCATCCACGCACTTTACTATTAACTGGACCAAATATGGGTGGGAAATCAACTCTTCTTCGTTCCACATGTCTGGCTGTTATACTTGCCCAGCTGGGCTGTTACGTGCCTTGTGAGATATGTGTTCTCTCACTTGTGGACATCATCTTTACACGGCTTGGTGCCACTGATCGTATCATGACTGGCGAGAGTACCTTCTTAGTGGAATGCACGGAAACTGCATCAGTTCTTCAACATGCCACTCCAGATTCTTTGGTTATTCTTGATGAATTGGGTCGTGGAACAAGCACCTTTGATGGATATGCCATTGCATATGCTGTATTTCGTCATCTTGTCGAAAAAATAAACTGCAGACTGTTATTCGCCACACACTATCACCCGCTTACGAGAGAATTTGCTTCTCATCCGCATGTTTCATTGCAACACATGGCATGTGCTTTTAGGTCAAAATCTAAATCCCCTTCAAAAAGTGACCAAGAGCTGGTATTTCTCTATCGCCTTACCTCAGGGGCATGCCCAGAGAGTTATGGATTGCAAGTAGCAATGATGGCTGGGATCCCTGAGAATGTGGTTGAAGCTGCTTCTAAGGCTGGTCAAGTAATGAAGAAATCTGTTGGAGAAAGCTTCAGGTCCAGTGAACAGAGATCGGAATTCTCAACTCTCCATGAGGAGTGGCTGAAGACACTGTTAACAGTTTCACAAACCGGTAATTATAATGACGAAGATTCATTGGACGTATTGTTTTGCTTGCAGCAGGAACTAAACTGCTCATATAGATTGGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_V

Protein Analysis

1076

Amino Acids

118.52

Weight (kDa)

6.24

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	246 - 357	2.6e-29	MutS domain I
MutS_II	PF05188	366 - 511	2.3e-11	MutS domain II
MutS_III	PF05192	532 - 749	3.4e-32	MutS domain III
MutS_V	PF00488	821 - 1013	7.7e-74	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24495 AT3G24495
fragaria_vesca	FvH4_1g05130 FvH4_1g05130
malus_domestica	MD15G1187500.v1.1
prunus_persica	Prupe.7G228900_v2.0.a1
pyrus_communis	pycom15g16830
rosa_chinensis	RchiOBHm_Chr2g0090761
rosa_laevigata	RLG00000016141
rosa_multiflora	Rmu_ssc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150840
rosa_rugosa	Rorug02G0010300
rosa_samantha	Rh2AG056300 Rh2BG055000 Rh2CG057400 Rh2DG055900
rosa_wichuraiana	Rw2G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1569, 3156
Acc36I	ACCTGC	1 cut(s)	1489
AccB1I	GGYRCC	4 cut(s)	193, 1007, 1795, 2603
AccB7I	CCANNNNNTGG	3 cut(s)	326, 1901, 2923
AccI	GTMKAC	1 cut(s)	1128
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	2 cut(s)	33, 151
AciI	CCGC	7 cut(s)	66, 101, 182, 1696, 2256, 2822, 2849
AclWI	GGATC	8 cut(s)	13, 132, 145, 162, 668, 1721, 2992, 3005
AcoI	YGGCCR	3 cut(s)	79, 838, 3222
AcsI	RAATTY	6 cut(s)	217, 483, 515, 1429, 2834, 3092
AcuI	CTGAAG	4 cut(s)	740, 1401, 3052, 3140
AfaI	GTAC	6 cut(s)	346, 1316, 1461, 1492, 1651, 2635
AfiI	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1487, 1585, 1901, 2480, 2923
AflIII	ACRYGT	1 cut(s)	2510
AgeI	ACCGGT	1 cut(s)	3146
AhdI	GACNNNNNGTC	1 cut(s)	459
AjiI	CACGTC	2 cut(s)	200, 2042
AjnI	CCWGG	2 cut(s)	667, 1511
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
Alw26I	GTCTC	2 cut(s)	66, 2304
AlwI	GGATC	8 cut(s)	13, 132, 145, 162, 668, 1721, 2992, 3005
AlwNI	CAGNNNCTG	4 cut(s)	208, 1328, 1600, 2147
Aor13HI	TCCGGA	2 cut(s)	33, 151
AoxI	GGCC	6 cut(s)	79, 665, 838, 1079, 1954, 3222
ApeKI	GCWGC	8 cut(s)	4, 973, 1220, 1351, 1825, 2090, 3020, 3193
ApoI	RAATTY	6 cut(s)	217, 483, 515, 1429, 2834, 3092
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AseI	ATTAAT	2 cut(s)	390, 1746
AsiGI	ACCGGT	1 cut(s)	3146
Asp700I	GAANNNNTTC	1 cut(s)	1934
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	6 cut(s)	437, 1079, 1445, 1640, 2471, 3072
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	5 cut(s)	683, 1242, 2396, 2438, 2810
AsuII	TTCGAA	1 cut(s)	1427
AsuNHI	GCTAGC	1 cut(s)	611
AvaII	GGWCC	5 cut(s)	437, 1445, 1640, 2471, 3072
AxyI	CCTNAGG	1 cut(s)	2947
BalI	TGGCCA	2 cut(s)	840, 3224
BamHI	GGATCC	2 cut(s)	137, 2997
BanI	GGYRCC	4 cut(s)	193, 1007, 1795, 2603
BanII	GRGCYC	1 cut(s)	1284
BbsI	GAAGAC	2 cut(s)	1416, 3128
BbvI	GCAGC	8 cut(s)	16, 985, 1207, 1363, 1812, 2102, 3007, 3205
BceAI	ACGGC	4 cut(s)	66, 94, 2201, 2612
BcgI	CGANNNNNNTGC	4 cut(s)	413, 447, 2126, 2160
BciT130I	CCWGG	2 cut(s)	669, 1513
BciVI	GTATCC	1 cut(s)	1403
BclI	TGATCA	2 cut(s)	988, 2065
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	66, 2304
BfaI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2165, 2423
BfmI	CTRYAG	2 cut(s)	2094, 2791
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	1489
BfuI	GTATCC	1 cut(s)	1403
BglII	AGATCT	2 cut(s)	1771, 2240
BmcAI	AGTACT	1 cut(s)	1316
Bme1390I	CCNGG	3 cut(s)	450, 669, 1513
Bme18I	GGWCC	5 cut(s)	437, 1445, 1640, 2471, 3072
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmgBI	CACGTC	2 cut(s)	200, 2042
BmgT120I	GGNCC	6 cut(s)	437, 1079, 1445, 1640, 2471, 3072
BmiI	GGNNCC	9 cut(s)	139, 172, 195, 331, 567, 1009, 1797, 2605, 2999
BmrFI	CCNGG	3 cut(s)	450, 669, 1513
BmrI	ACTGGG	1 cut(s)	760
BmtI	GCTAGC	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	760
BoxI	GACNNNNGTC	1 cut(s)	2204
BpiI	GAAGAC	2 cut(s)	1416, 3128
BplI	GAGNNNNNCTC	2 cut(s)	1103, 1135
BpmI	CTGGAG	2 cut(s)	1329, 2670
Bpu14I	TTCGAA	1 cut(s)	1427
BpuEI	CTTGAG	3 cut(s)	581, 889, 1631
BpuMI	CCSGG	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	17
BsaAI	YACGTR	2 cut(s)	473, 2548
BsaBI	GATNNNNATC	4 cut(s)	410, 654, 2070, 2442
BsaJI	CCNNGG	4 cut(s)	82, 449, 589, 946
BsaWI	WCCGGW	4 cut(s)	33, 151, 309, 3146
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1487, 1585, 1901, 2480, 2923
Bse118I	RCCGGY	2 cut(s)	211, 3146
Bse1I	ACTGG	9 cut(s)	378, 755, 1346, 1355, 1782, 1974, 2473, 2629, 3075
Bse21I	CCTNAGG	1 cut(s)	2947
Bse3DI	GCAATG	5 cut(s)	429, 1546, 2748, 2858, 2991
Bse8I	GATNNNNATC	4 cut(s)	410, 654, 2070, 2442
BseAI	TCCGGA	2 cut(s)	33, 151
BseBI	CCWGG	2 cut(s)	669, 1513
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	4 cut(s)	82, 449, 589, 946
BseJI	GATNNNNATC	4 cut(s)	410, 654, 2070, 2442
BseLI	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1487, 1585, 1901, 2480, 2923
BseMI	GCAATG	5 cut(s)	429, 1546, 2748, 2858, 2991
BseMII	CTCAG	7 cut(s)	177, 314, 1823, 1972, 2184, 2961, 2994
BseNI	ACTGG	9 cut(s)	378, 755, 1346, 1355, 1782, 1974, 2473, 2629, 3075
BseRI	GAGGAG	3 cut(s)	506, 578, 3125
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	8 cut(s)	16, 985, 1207, 1363, 1812, 2102, 3007, 3205
BseYI	CCCAGC	3 cut(s)	2532, 2536, 2993
BsgI	GTGCAG	2 cut(s)	1314, 1370
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	6 cut(s)	81, 667, 840, 1081, 1956, 3224
BshNI	GGYRCC	4 cut(s)	193, 1007, 1795, 2603
BshTI	ACCGGT	1 cut(s)	3146
BshVI	ATCGAT	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3147
BslFI	GGGAC	2 cut(s)	466, 1954
BslI	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1487, 1585, 1901, 2480, 2923
BsmAI	GTCTC	2 cut(s)	66, 2304
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	466, 1954
BsmI	GAATGC	1 cut(s)	2654
BsnI	GGCC	6 cut(s)	81, 667, 840, 1081, 1956, 3224
Bsp119I	TTCGAA	1 cut(s)	1427
Bsp1286I	GDGCHC	1 cut(s)	1284
Bsp13I	TCCGGA	2 cut(s)	33, 151
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	7 cut(s)	66, 101, 182, 1696, 2256, 2822, 2849
BspANI	GGCC	6 cut(s)	81, 667, 840, 1081, 1956, 3224
BspCNI	CTCAG	7 cut(s)	178, 313, 1822, 1971, 2185, 2960, 2995
BspDI	ATCGAT	1 cut(s)	17
BspEI	TCCGGA	2 cut(s)	33, 151
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	2 cut(s)	2125, 2619
BspLI	GGNNCC	9 cut(s)	139, 172, 195, 331, 567, 1009, 1797, 2605, 2999
BspMAI	CTGCAG	1 cut(s)	2795
BspMI	ACCTGC	1 cut(s)	1489
BspOI	GCTAGC	1 cut(s)	615
BspPI	GGATC	8 cut(s)	13, 132, 145, 162, 668, 1721, 2992, 3005
BspT104I	TTCGAA	1 cut(s)	1427
BspT107I	GGYRCC	4 cut(s)	193, 1007, 1795, 2603
BsrDI	GCAATG	5 cut(s)	429, 1546, 2748, 2858, 2991
BsrFI	RCCGGY	2 cut(s)	211, 3146
BsrI	ACTGG	9 cut(s)	378, 755, 1346, 1355, 1782, 1974, 2473, 2629, 3075
BssAI	RCCGGY	2 cut(s)	211, 3146
BssECI	CCNNGG	4 cut(s)	82, 449, 589, 946
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	2 cut(s)	669, 1513
Bst6I	CTCTTC	2 cut(s)	244, 2502
BstBAI	YACGTR	2 cut(s)	473, 2548
BstBI	TTCGAA	1 cut(s)	1427
BstC8I	GCNNGC	7 cut(s)	213, 226, 613, 1823, 2260, 2956, 3191
BstDSI	CCRYGG	3 cut(s)	82, 589, 946
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	66, 2304
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	221, 1007, 1217, 1229, 1301, 2990, 3029
BstNI	CCWGG	2 cut(s)	669, 1513
BstNSI	RCATGY	6 cut(s)	2216, 2514, 2681, 2855, 2877, 2958
BstPAI	GACNNNNGTC	1 cut(s)	2204
BstSCI	CCNGG	3 cut(s)	448, 667, 1511
BstSFI	CTRYAG	2 cut(s)	2094, 2791
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	8 cut(s)	16, 985, 1207, 1363, 1812, 2102, 3007, 3205
BstV2I	GAAGAC	2 cut(s)	1416, 3128
BstX2I	RGATCY	6 cut(s)	137, 154, 1713, 1771, 2240, 2997
BstXI	CCANNNNNNTGG	1 cut(s)	2515
BstYI	RGATCY	6 cut(s)	137, 154, 1713, 1771, 2240, 2997
BstZI	CGGCCG	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	2947
BsuI	GTATCC	1 cut(s)	1403
BsuRI	GGCC	6 cut(s)	81, 667, 840, 1081, 1956, 3224
BsuTUI	ATCGAT	1 cut(s)	17
BtgI	CCRYGG	3 cut(s)	82, 589, 946
BtrI	CACGTC	2 cut(s)	200, 2042
BtsI	GCAGTG	2 cut(s)	1331, 2059
BtsIMutI	CAGTG	9 cut(s)	1207, 1304, 1331, 1353, 1652, 2059, 2607, 3082, 3125
BveI	ACCTGC	1 cut(s)	1489
Cac8I	GCNNGC	7 cut(s)	213, 226, 613, 1823, 2260, 2956, 3191
CaiI	CAGNNNCTG	4 cut(s)	208, 1328, 1600, 2147
CciI	TCATGA	2 cut(s)	2125, 2619
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	211, 3146
Cfr13I	GGNCC	6 cut(s)	437, 1079, 1445, 1640, 2471, 3072
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	1 cut(s)	1606
Csp6I	GTAC	6 cut(s)	345, 1315, 1460, 1491, 1650, 2634
CspAI	ACCGGT	1 cut(s)	3146
CviQI	GTAC	6 cut(s)	345, 1315, 1460, 1491, 1650, 2634
DraI	TTTAAA	3 cut(s)	793, 1179, 2032
DriI	GACNNNNNGTC	1 cut(s)	459
EaeI	YGGCCR	3 cut(s)	79, 838, 3222
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	244, 2502
Eam1105I	GACNNNNNGTC	1 cut(s)	459
EarI	CTCTTC	2 cut(s)	244, 2502
EciI	GGCGGA	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	589
Eco147I	AGGCCT	2 cut(s)	667, 1956
Eco24I	GRGCYC	1 cut(s)	1284
Eco47I	GGWCC	5 cut(s)	437, 1445, 1640, 2471, 3072
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	4 cut(s)	740, 1401, 3052, 3140
Eco81I	CCTNAGG	1 cut(s)	2947
EcoRI	GAATTC	4 cut(s)	217, 483, 1429, 3092
EcoRII	CCWGG	2 cut(s)	667, 1511
EcoT14I	CCWWGG	1 cut(s)	589
EcoT22I	ATGCAT	3 cut(s)	264, 411, 1663
EcoT38I	GRGCYC	1 cut(s)	1284
ErhI	CCWWGG	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	466, 1954
FauI	CCCGC	1 cut(s)	2829
FauNDI	CATATG	1 cut(s)	2755
FbaI	TGATCA	2 cut(s)	988, 2065
FblI	GTMKAC	1 cut(s)	1128
FriOI	GRGCYC	1 cut(s)	1284
FspBI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2165, 2423
GlaI	GCGC	1 cut(s)	8
GsaI	CCCAGC	3 cut(s)	2536, 2540, 2997
GsuI	CTGGAG	2 cut(s)	1329, 2670
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	6 cut(s)	81, 667, 840, 1081, 1956, 3224
HapII	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3147
HgaI	GACGC	1 cut(s)	1606
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	4 cut(s)	1129, 1980, 2221, 3132
HindII	GTYRAC	4 cut(s)	1129, 1980, 2221, 3132
HindIII	AAGCTT	2 cut(s)	2260, 3064
HpaI	GTTAAC	2 cut(s)	1980, 3132
HpaII	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3147
HphI	GGTGA	5 cut(s)	683, 1242, 2396, 2438, 2810
Hpy99I	CGWCG	2 cut(s)	80, 137
HpyAV	CCTTC	8 cut(s)	37, 100, 184, 268, 657, 1991, 2647, 2913
HpyCH4IV	ACGT	7 cut(s)	199, 460, 472, 1530, 2041, 2547, 3177
HpyF10VI	GCNNNNNNNGC	7 cut(s)	221, 1007, 1217, 1229, 1301, 2990, 3029
HpySE526I	ACGT	7 cut(s)	199, 460, 472, 1530, 2041, 2547, 3177
HspAI	GCGC	1 cut(s)	7
Kpn2I	TCCGGA	2 cut(s)	33, 151
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Ksp22I	TGATCA	2 cut(s)	988, 2065
KspAI	GTTAAC	2 cut(s)	1980, 3132
LmnI	GCTCC	6 cut(s)	109, 115, 121, 565, 847, 2273
Lsp1109I	GCAGC	8 cut(s)	16, 985, 1207, 1363, 1812, 2102, 3007, 3205
MaeI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2165, 2423
MaeII	ACGT	7 cut(s)	199, 460, 472, 1530, 2041, 2547, 3177
MaeIII	GTNAC	8 cut(s)	419, 1045, 1248, 1678, 2102, 2251, 2543, 2912
MfeI	CAATTG	1 cut(s)	1337
MflI	RGATCY	6 cut(s)	137, 154, 1713, 1771, 2240, 2997
MhlI	GDGCHC	1 cut(s)	1284
MlsI	TGGCCA	2 cut(s)	840, 3224
MluNI	TGGCCA	2 cut(s)	840, 3224
MlyI	GAGTC	3 cut(s)	230, 1336, 1936
MmeI	TCCRAC	3 cut(s)	115, 940, 3037
Mox20I	TGGCCA	2 cut(s)	840, 3224
Mph1103I	ATGCAT	3 cut(s)	264, 411, 1663
MroI	TCCGGA	2 cut(s)	33, 151
MroNI	GCCGGC	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	1934
MscI	TGGCCA	2 cut(s)	840, 3224
MslI	CAYNNNNRTG	2 cut(s)	312, 2850
Msp20I	TGGCCA	2 cut(s)	840, 3224
MspA1I	CMGCKG	3 cut(s)	976, 2093, 2536
MspI	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3147
MspR9I	CCNGG	3 cut(s)	450, 669, 1513
MunI	CAATTG	1 cut(s)	1337
Mva1269I	GAATGC	1 cut(s)	2654
MvaI	CCWGG	2 cut(s)	669, 1513
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	7 cut(s)	221, 1007, 1217, 1229, 1301, 2990, 3029
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	2755
NgoMIV	GCCGGC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	611
NlaIV	GGNNCC	9 cut(s)	139, 172, 195, 331, 567, 1009, 1797, 2605, 2999
NmuCI	GTSAC	6 cut(s)	419, 1045, 1248, 1678, 2102, 2912
NsiI	ATGCAT	3 cut(s)	264, 411, 1663
NspI	RCATGY	6 cut(s)	2216, 2514, 2681, 2855, 2877, 2958
NspV	TTCGAA	1 cut(s)	1427
PaeI	GCATGC	1 cut(s)	2958
PagI	TCATGA	2 cut(s)	2125, 2619
PceI	AGGCCT	2 cut(s)	667, 1956
PciI	ACATGT	1 cut(s)	2510
PcsI	WCGNNNNNNNCGW	2 cut(s)	420, 478
PctI	GAATGC	1 cut(s)	2654
PdiI	GCCGGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	1934
PflMI	CCANNNNNTGG	3 cut(s)	326, 1901, 2923
PinAI	ACCGGT	1 cut(s)	3146
PleI	GAGTC	3 cut(s)	230, 1336, 1936
PpsI	GAGTC	3 cut(s)	230, 1336, 1936
Ppu21I	YACGTR	2 cut(s)	473, 2548
PscI	ACATGT	1 cut(s)	2510
PshAI	GACNNNNGTC	1 cut(s)	2204
PshBI	ATTAAT	2 cut(s)	390, 1746
PsiI	TTATAA	2 cut(s)	1569, 3156
Psp6I	CCWGG	2 cut(s)	667, 1511
PspFI	CCCAGC	3 cut(s)	2532, 2536, 2993
PspGI	CCWGG	2 cut(s)	667, 1511
PspN4I	GGNNCC	9 cut(s)	139, 172, 195, 331, 567, 1009, 1797, 2605, 2999
PspPI	GGNCC	6 cut(s)	437, 1079, 1445, 1640, 2471, 3072
PstI	CTGCAG	1 cut(s)	2795
PstNI	CAGNNNCTG	4 cut(s)	208, 1328, 1600, 2147
PsuI	RGATCY	6 cut(s)	137, 154, 1713, 1771, 2240, 2997
PvuII	CAGCTG	3 cut(s)	976, 2093, 2536
RsaI	GTAC	6 cut(s)	346, 1316, 1461, 1492, 1651, 2635
RsaNI	GTAC	6 cut(s)	345, 1315, 1460, 1491, 1650, 2634
RseI	CAYNNNNRTG	2 cut(s)	312, 2850
SalI	GTCGAC	1 cut(s)	1127
Sau96I	GGNCC	6 cut(s)	437, 1079, 1445, 1640, 2471, 3072
ScaI	AGTACT	1 cut(s)	1316
SchI	GAGTC	3 cut(s)	230, 1336, 1936
ScrFI	CCNGG	3 cut(s)	450, 669, 1513
SduI	GDGCHC	1 cut(s)	1284
SfcI	CTRYAG	2 cut(s)	2094, 2791
SfuI	TTCGAA	1 cut(s)	1427
SinI	GGWCC	5 cut(s)	437, 1445, 1640, 2471, 3072
SmiMI	CAYNNNNRTG	2 cut(s)	312, 2850
SmlI	CTYRAG	3 cut(s)	560, 868, 1610
SmoI	CTYRAG	3 cut(s)	560, 868, 1610
SphI	GCATGC	1 cut(s)	2958
SseBI	AGGCCT	2 cut(s)	667, 1956
SsiI	CCGC	7 cut(s)	66, 101, 182, 1696, 2256, 2822, 2849
SspI	AATATT	2 cut(s)	1075, 2353
SspMI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2165, 2423
StuI	AGGCCT	2 cut(s)	667, 1956
StyD4I	CCNGG	3 cut(s)	448, 667, 1511
StyI	CCWWGG	1 cut(s)	589
TaiI	ACGT	7 cut(s)	202, 463, 475, 1533, 2044, 2550, 3180
TatI	WGTACW	1 cut(s)	1314
TauI	GCSGC	2 cut(s)	104, 1699
TscAI	CASTG	9 cut(s)	1207, 1311, 1338, 1353, 1659, 2059, 2614, 3082, 3132
TseFI	GTSAC	6 cut(s)	419, 1045, 1248, 1678, 2102, 2912
TseI	GCWGC	8 cut(s)	4, 973, 1220, 1351, 1825, 2090, 3020, 3193
Tsp45I	GTSAC	6 cut(s)	419, 1045, 1248, 1678, 2102, 2912
TspGWI	ACGGA	3 cut(s)	935, 979, 2669
TspRI	CASTG	9 cut(s)	1207, 1311, 1338, 1353, 1659, 2059, 2614, 3082, 3132
Van91I	CCANNNNNTGG	3 cut(s)	326, 1901, 2923
VpaK11BI	GGWCC	5 cut(s)	437, 1445, 1640, 2471, 3072
VspI	ATTAAT	2 cut(s)	390, 1746
XapI	RAATTY	6 cut(s)	217, 483, 515, 1429, 2834, 3092
XceI	RCATGY	6 cut(s)	2216, 2514, 2681, 2855, 2877, 2958
XmiI	GTMKAC	1 cut(s)	1128
XmnI	GAANNNNTTC	1 cut(s)	1934
XspI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2165, 2423
ZrmI	AGTACT	1 cut(s)	1316
Zsp2I	ATGCAT	3 cut(s)	264, 411, 1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.