Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014491

Physical Location & Seq

Genomic Coordinates Forward (+)

4541371 .. 4548643

Gene Structure 7273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3108 bp

ATGCAGCGCCAGAAATCGATCCTCTCCTTCTTCCGGAAACCCTCGCCGGACAAAAGCACCTCCACCGCCGGAGACGACGGCCGTGGAGTTAATCAGTTCGCGGCGAAGGAGCAGGAGCAGGAGCAGAAGCCCGTCGGATCCAATCAGCCTCCGGATCTCGAAGTTCGAGGAACCGACACTCCGCCTGAGAAGGTGCCACGTCAGATTCTGCCGGCGAATTCTGCGAGCCTGACAGACTCTTCGCCTTTCTCTAGTATTATGCATAAGTTTATGAAGGTCGATGACACAAATAAGGCTTCTCAGAGCCACCGGAATGAACCAAATGGTGGTTCCTCTAATGATTGTACGGTATCTGGTAAACTCAATGATACCAATTCCAGTAAGAAAATTAATCGAGGTGCTGTGATGCATATCGAAAGTGACGAGGACATTGCTGGACCAGAAACACCGGGGACACAACGTCTAGTTCCACGTATGAAGCGAATTCAAGAGGAGATTCCTAAGTTTGGGGATAAATTTGGGAGTTCTTTGCCAGATTCTAGCAAAAGATTGAAAGTTCTTGAGGAGCCAACAGTCTTAGACAAGAGCCATGGGGAAGCATCTGATATGGCTAGCAAGTTTGAGTGGCTTGACCCATCCCGAATCAGAGATGCAAATCGCAGAAGGCCTGGTGATCCTCTCTATGACAAAACATCACTTTATATACCACCTGATGCTCTGAAGAAAATGTCGGCATCACAAAGACAATACTGGGATGTCAAGTGTCAGTATATGGATGTTGTGATTTTCTTTAAAGTGGGAAAGTTTTATGAGCTTTATGAACTAGATGCTGAAATTGGCCACAAGGAGCTTGATTGGAAAATGACCTTGAGTGGTGTTGGGAAATGTCGTCAGGTAATTCCAAGAAAATTGGTTCAGGTAGTCACACCATCAACCACAACTGATGGAAATATTGGGCCTGATGCTGTTCATCTTCTTGCAATAAAAGAGGGGAACTCTGGGGTCGACAATGGTTCAGTTGTATATGGGTTTGCTTTTGTTGATTGTTCTGCTTTAAAGTTCTGGATTGGTGCTATCAGTGATGATGCTTCGTGTGCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAAAGAAGTTGTATATGAAAACAGAGGGCTCTCAAAAGAAGCTCAAAAAGCACTGAAAAAGTACTCAACAGGTTCTGCACTGCAATTGACTCCAGTGCAGCCAGTCAATGATTTTATGGATGCTTCTGAAGTTAGTAAATTGATTCAGTTGAAAGGATACTTCAAAGGGTCTTCGAATTCATGGAATCATGGACCTGATGGTGTGGTACACCATGATATAACTTTACCTGCTCTGGGTACACTTATTGACCACCTATCCAGGTTGATGTTAGATGACGTTTTACGCAATGGAGATATATTACCTTACCAAGTTTATAAGGGTTGCCTCAAAATGGATGGACAGACGCTGATAAATCTTGAGATTTTCAGTAATACTGCTGATGGTGGTCCATCAGGTACACTGTATGCATATCTCGATAACTGTGTGACTGCATCTGGTAAGCGGCTTTTGAGGAAGTGGATCTGCCATCCCTTGAAGTCTGTTGAAGCTATTAATAACAGGCTTAATTTGGTTGAAGATCTACTGGCACATCCAGAAATGGTGCCACTTATTGCTCAGTATCTTCGCAAGCTGCCAGACTTAGAGAGGTTGTTTGGACGGGTTAGAGCAACTGTTCAGTCGTCAGCTTCCCTCCTATTGCCATTATTTGGCAAGAAATTACTAAAACAGAGAGTGAAAGTGTTCGGGACTCTTGTGAAAGGCCTCAGATTTGGACTGGATTTGTTAACAGTATTACAAAATGAAGGGCATATAATTGAGCTGTTATTAAAACTATTTAAAGTTCCACGTCTAAGTGGCAGTGATGGGCTTGATCAATATCTTAAACAATTTGAAGCAGCTGTAGATAGTGACTTCCCAAATTACCAGAATCATGATGCAACCGATTCAGATGCTGAAATACTCTTGATTCTAGTCGAGCTATTTATGGAGAAAGCAACTGAGTGGACTGATGTCATACATGCCGTCAACTGTATTGATGTGCTAAGATCTTTTGTAGTTACCGCAAGCTTCCCAAGTGGAGCTATGTCCAGACCTGTTCTTTTGTCTCAATCTCAAAATACAACCTTGAATGGAGAAAATGGAAGTCCTACACTTAATATTAAAGGACTATGGCATCCATTTGCTCTTGGTGAAAATGGTGGACAGCCTGTGCCAAATGATGTAGTTCTAGGTGAAAATACTGATGGCTATCATCCACGCACTTTACTATTAACTGGACCAAATATGGGTGGGAAATCAACTCTTCTTCGTTCCACATGTCTGGCTGTTATACTTGCCCAGCTGGGCTGTTACGTGCCTTGTGAGATATGTGTTCTCTCACTTGTGGACATCATCTTTACACGGCTTGGTGCCACTGATCGTATCATGACTGGCGAGAGTACCTTCTTAGTGGAATGCACGGAAACTGCATCAGTTCTTCAACATGCCACTCCAGATTCTTTGGTTATTCTTGATGAATTGGGTCGTGGAACAAGCACCTTTGATGGATATGCCATTGCATATGCTGTATTTCGTCATCTTGTCGAAAAAATAAACTGCAGACTGTTATTCGCCACACACTATCACCCGCTTACGAGAGAATTTGCTTCTCATCCGCATGTTTCATTGCAACACATGGCATGTGCTTTTAGGTCAAAATCTAAATCCCCTTCAAAAAGTGACCAAGAGCTGGTATTTCTCTATCGCCTTACCTCAGGGGCATGCCCAGAGAGTTATGGATTGCAAGTAGCAATGATGGCTGGGATCCCTGAGAATGTGGTTGAAGCTGCTTCTAAGGCTGGTCAAGTAATGAAGAAATCTGTTGGAGAAAGCTTCAGGTCCAGTGAACAGAGATCGGAATTCTCAACTCTCCATGAGGAGTGGCTGAAGACACTGTTAACAGTTTCACAAACCGGTAATTATAATGACGAAGATTCATTGGACGTATTGTTTTGCTTGCAGCAGGAACTAAACTGCTCATATAGATTGGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_V

Protein Analysis

1035

Amino Acids

114.16

Weight (kDa)

6.18

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	246 - 291	6.5e-13	MutS domain I
MutS_II	PF05188	325 - 470	2.1e-11	MutS domain II
MutS_III	PF05192	491 - 708	3.2e-32	MutS domain III
MutS_V	PF00488	780 - 972	7.3e-74	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24495 AT3G24495
fragaria_vesca	FvH4_1g05130 FvH4_1g05130
malus_domestica	MD15G1187500.v1.1
prunus_persica	Prupe.7G228900_v2.0.a1
pyrus_communis	pycom15g16830
rosa_chinensis	RchiOBHm_Chr2g0090761
rosa_laevigata	RLG00000016141
rosa_multiflora	Rmu_ssc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150840
rosa_rugosa	Rorug02G0010300
rosa_samantha	Rh2AG056300 Rh2BG055000 Rh2CG057400 Rh2DG055900
rosa_wichuraiana	Rw2G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1446, 3033
Acc36I	ACCTGC	1 cut(s)	1366
AccB1I	GGYRCC	3 cut(s)	193, 1672, 2480
AccB7I	CCANNNNNTGG	3 cut(s)	326, 1778, 2800
AccI	GTMKAC	1 cut(s)	1005
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	2 cut(s)	33, 151
AciI	CCGC	7 cut(s)	66, 101, 182, 1573, 2133, 2699, 2726
AclWI	GGATC	8 cut(s)	13, 132, 145, 162, 668, 1598, 2869, 2882
AcoI	YGGCCR	3 cut(s)	79, 838, 3099
AcsI	RAATTY	6 cut(s)	217, 483, 515, 1306, 2711, 2969
AcuI	CTGAAG	4 cut(s)	740, 1278, 2929, 3017
AfaI	GTAC	6 cut(s)	346, 1193, 1338, 1369, 1528, 2512
AfiI	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1364, 1462, 1778, 2357, 2800
AflIII	ACRYGT	1 cut(s)	2387
AgeI	ACCGGT	1 cut(s)	3023
AhdI	GACNNNNNGTC	1 cut(s)	459
AjiI	CACGTC	2 cut(s)	200, 1919
AjnI	CCWGG	2 cut(s)	667, 1388
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
Alw26I	GTCTC	2 cut(s)	66, 2181
AlwI	GGATC	8 cut(s)	13, 132, 145, 162, 668, 1598, 2869, 2882
AlwNI	CAGNNNCTG	4 cut(s)	208, 1205, 1477, 2024
Aor13HI	TCCGGA	2 cut(s)	33, 151
AoxI	GGCC	6 cut(s)	79, 665, 838, 956, 1831, 3099
ApeKI	GCWGC	7 cut(s)	4, 1097, 1228, 1702, 1967, 2897, 3070
ApoI	RAATTY	6 cut(s)	217, 483, 515, 1306, 2711, 2969
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AseI	ATTAAT	2 cut(s)	390, 1623
AsiGI	ACCGGT	1 cut(s)	3023
Asp700I	GAANNNNTTC	1 cut(s)	1811
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	6 cut(s)	437, 956, 1322, 1517, 2348, 2949
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	5 cut(s)	683, 1119, 2273, 2315, 2687
AsuII	TTCGAA	1 cut(s)	1304
AsuNHI	GCTAGC	1 cut(s)	611
AvaII	GGWCC	5 cut(s)	437, 1322, 1517, 2348, 2949
AxyI	CCTNAGG	1 cut(s)	2824
BalI	TGGCCA	2 cut(s)	840, 3101
BamHI	GGATCC	2 cut(s)	137, 2874
BanI	GGYRCC	3 cut(s)	193, 1672, 2480
BanII	GRGCYC	1 cut(s)	1161
BbsI	GAAGAC	2 cut(s)	1293, 3005
BbvI	GCAGC	7 cut(s)	16, 1084, 1240, 1689, 1979, 2884, 3082
BceAI	ACGGC	4 cut(s)	66, 94, 2078, 2489
BcgI	CGANNNNNNTGC	4 cut(s)	413, 447, 2003, 2037
BciT130I	CCWGG	2 cut(s)	669, 1390
BciVI	GTATCC	1 cut(s)	1280
BclI	TGATCA	1 cut(s)	1942
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	66, 2181
BfaI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2042, 2300
BfmI	CTRYAG	2 cut(s)	1971, 2668
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	1366
BfuI	GTATCC	1 cut(s)	1280
BglII	AGATCT	2 cut(s)	1648, 2117
BisI	GCNGC	9 cut(s)	5, 102, 1098, 1229, 1574, 1703, 1968, 2898, 3071
BlsI	GCNGC	9 cut(s)	6, 103, 1099, 1230, 1575, 1704, 1969, 2899, 3072
BmcAI	AGTACT	1 cut(s)	1193
Bme1390I	CCNGG	3 cut(s)	450, 669, 1390
Bme18I	GGWCC	5 cut(s)	437, 1322, 1517, 2348, 2949
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmgBI	CACGTC	2 cut(s)	200, 1919
BmgT120I	GGNCC	6 cut(s)	437, 956, 1322, 1517, 2348, 2949
BmiI	GGNNCC	8 cut(s)	139, 172, 195, 331, 567, 1674, 2482, 2876
BmrFI	CCNGG	3 cut(s)	450, 669, 1390
BmrI	ACTGGG	1 cut(s)	760
BmtI	GCTAGC	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	760
BoxI	GACNNNNGTC	1 cut(s)	2081
BpiI	GAAGAC	2 cut(s)	1293, 3005
BplI	GAGNNNNNCTC	2 cut(s)	980, 1012
BpmI	CTGGAG	2 cut(s)	1206, 2547
Bpu14I	TTCGAA	1 cut(s)	1304
BpuEI	CTTGAG	3 cut(s)	581, 889, 1508
BpuMI	CCSGG	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	17
BsaAI	YACGTR	2 cut(s)	473, 2425
BsaBI	GATNNNNATC	4 cut(s)	410, 654, 1947, 2319
BsaJI	CCNNGG	3 cut(s)	82, 449, 589
BsaWI	WCCGGW	4 cut(s)	33, 151, 309, 3023
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1364, 1462, 1778, 2357, 2800
Bse118I	RCCGGY	2 cut(s)	211, 3023
Bse1I	ACTGG	9 cut(s)	378, 755, 1223, 1232, 1659, 1851, 2350, 2506, 2952
Bse21I	CCTNAGG	1 cut(s)	2824
Bse3DI	GCAATG	5 cut(s)	429, 1423, 2625, 2735, 2868
Bse8I	GATNNNNATC	4 cut(s)	410, 654, 1947, 2319
BseAI	TCCGGA	2 cut(s)	33, 151
BseBI	CCWGG	2 cut(s)	669, 1390
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	82, 449, 589
BseJI	GATNNNNATC	4 cut(s)	410, 654, 1947, 2319
BseLI	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1364, 1462, 1778, 2357, 2800
BseMI	GCAATG	5 cut(s)	429, 1423, 2625, 2735, 2868
BseMII	CTCAG	7 cut(s)	177, 314, 1700, 1849, 2061, 2838, 2871
BseNI	ACTGG	9 cut(s)	378, 755, 1223, 1232, 1659, 1851, 2350, 2506, 2952
BseRI	GAGGAG	3 cut(s)	506, 578, 3002
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	7 cut(s)	16, 1084, 1240, 1689, 1979, 2884, 3082
BseYI	CCCAGC	3 cut(s)	2409, 2413, 2870
BsgI	GTGCAG	2 cut(s)	1191, 1247
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	6 cut(s)	81, 667, 840, 958, 1833, 3101
BshNI	GGYRCC	3 cut(s)	193, 1672, 2480
BshTI	ACCGGT	1 cut(s)	3023
BshVI	ATCGAT	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3024
BslFI	GGGAC	2 cut(s)	466, 1831
BslI	CCNNNNNNNGG	8 cut(s)	33, 326, 506, 1364, 1462, 1778, 2357, 2800
BsmAI	GTCTC	2 cut(s)	66, 2181
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	466, 1831
BsmI	GAATGC	1 cut(s)	2531
BsnI	GGCC	6 cut(s)	81, 667, 840, 958, 1833, 3101
Bsp119I	TTCGAA	1 cut(s)	1304
Bsp1286I	GDGCHC	1 cut(s)	1161
Bsp13I	TCCGGA	2 cut(s)	33, 151
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	7 cut(s)	66, 101, 182, 1573, 2133, 2699, 2726
BspANI	GGCC	6 cut(s)	81, 667, 840, 958, 1833, 3101
BspCNI	CTCAG	7 cut(s)	178, 313, 1699, 1848, 2062, 2837, 2872
BspDI	ATCGAT	1 cut(s)	17
BspEI	TCCGGA	2 cut(s)	33, 151
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	2 cut(s)	2002, 2496
BspLI	GGNNCC	8 cut(s)	139, 172, 195, 331, 567, 1674, 2482, 2876
BspMAI	CTGCAG	1 cut(s)	2672
BspMI	ACCTGC	1 cut(s)	1366
BspOI	GCTAGC	1 cut(s)	615
BspPI	GGATC	8 cut(s)	13, 132, 145, 162, 668, 1598, 2869, 2882
BspT104I	TTCGAA	1 cut(s)	1304
BspT107I	GGYRCC	3 cut(s)	193, 1672, 2480
BsrDI	GCAATG	5 cut(s)	429, 1423, 2625, 2735, 2868
BsrFI	RCCGGY	2 cut(s)	211, 3023
BsrI	ACTGG	9 cut(s)	378, 755, 1223, 1232, 1659, 1851, 2350, 2506, 2952
BssAI	RCCGGY	2 cut(s)	211, 3023
BssECI	CCNNGG	3 cut(s)	82, 449, 589
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	2 cut(s)	669, 1390
Bst6I	CTCTTC	2 cut(s)	244, 2379
BstBAI	YACGTR	2 cut(s)	473, 2425
BstBI	TTCGAA	1 cut(s)	1304
BstC8I	GCNNGC	7 cut(s)	213, 226, 613, 1700, 2137, 2833, 3068
BstDSI	CCRYGG	2 cut(s)	82, 589
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	66, 2181
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	6 cut(s)	221, 1094, 1106, 1178, 2867, 2906
BstNI	CCWGG	2 cut(s)	669, 1390
BstNSI	RCATGY	6 cut(s)	2093, 2391, 2558, 2732, 2754, 2835
BstPAI	GACNNNNGTC	1 cut(s)	2081
BstSCI	CCNGG	3 cut(s)	448, 667, 1388
BstSFI	CTRYAG	2 cut(s)	1971, 2668
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	7 cut(s)	16, 1084, 1240, 1689, 1979, 2884, 3082
BstV2I	GAAGAC	2 cut(s)	1293, 3005
BstX2I	RGATCY	6 cut(s)	137, 154, 1590, 1648, 2117, 2874
BstXI	CCANNNNNNTGG	1 cut(s)	2392
BstYI	RGATCY	6 cut(s)	137, 154, 1590, 1648, 2117, 2874
BstZI	CGGCCG	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	2824
BsuI	GTATCC	1 cut(s)	1280
BsuRI	GGCC	6 cut(s)	81, 667, 840, 958, 1833, 3101
BsuTUI	ATCGAT	1 cut(s)	17
BtgI	CCRYGG	2 cut(s)	82, 589
BtrI	CACGTC	2 cut(s)	200, 1919
BtsI	GCAGTG	2 cut(s)	1208, 1936
BtsIMutI	CAGTG	9 cut(s)	1084, 1181, 1208, 1230, 1529, 1936, 2484, 2959, 3002
BveI	ACCTGC	1 cut(s)	1366
Cac8I	GCNNGC	7 cut(s)	213, 226, 613, 1700, 2137, 2833, 3068
CaiI	CAGNNNCTG	4 cut(s)	208, 1205, 1477, 2024
CciI	TCATGA	2 cut(s)	2002, 2496
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	211, 3023
Cfr13I	GGNCC	6 cut(s)	437, 956, 1322, 1517, 2348, 2949
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	1 cut(s)	1483
Csp6I	GTAC	6 cut(s)	345, 1192, 1337, 1368, 1527, 2511
CspAI	ACCGGT	1 cut(s)	3023
CviQI	GTAC	6 cut(s)	345, 1192, 1337, 1368, 1527, 2511
DraI	TTTAAA	3 cut(s)	793, 1056, 1909
DriI	GACNNNNNGTC	1 cut(s)	459
EaeI	YGGCCR	3 cut(s)	79, 838, 3099
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	244, 2379
Eam1105I	GACNNNNNGTC	1 cut(s)	459
EarI	CTCTTC	2 cut(s)	244, 2379
EciI	GGCGGA	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	589
Eco147I	AGGCCT	2 cut(s)	667, 1833
Eco24I	GRGCYC	1 cut(s)	1161
Eco47I	GGWCC	5 cut(s)	437, 1322, 1517, 2348, 2949
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	4 cut(s)	740, 1278, 2929, 3017
Eco81I	CCTNAGG	1 cut(s)	2824
EcoRI	GAATTC	4 cut(s)	217, 483, 1306, 2969
EcoRII	CCWGG	2 cut(s)	667, 1388
EcoT14I	CCWWGG	1 cut(s)	589
EcoT22I	ATGCAT	3 cut(s)	264, 411, 1540
EcoT38I	GRGCYC	1 cut(s)	1161
ErhI	CCWWGG	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	466, 1831
FauI	CCCGC	1 cut(s)	2706
FauNDI	CATATG	1 cut(s)	2632
FbaI	TGATCA	1 cut(s)	1942
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	9 cut(s)	5, 102, 1098, 1229, 1574, 1703, 1968, 2898, 3071
FriOI	GRGCYC	1 cut(s)	1161
Fsp4HI	GCNGC	9 cut(s)	5, 102, 1098, 1229, 1574, 1703, 1968, 2898, 3071
FspBI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2042, 2300
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	9 cut(s)	5, 102, 1098, 1229, 1574, 1703, 1968, 2898, 3071
GsaI	CCCAGC	3 cut(s)	2413, 2417, 2874
GsuI	CTGGAG	2 cut(s)	1206, 2547
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	6 cut(s)	81, 667, 840, 958, 1833, 3101
HapII	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3024
HgaI	GACGC	1 cut(s)	1483
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	4 cut(s)	1006, 1857, 2098, 3009
HindII	GTYRAC	4 cut(s)	1006, 1857, 2098, 3009
HindIII	AAGCTT	2 cut(s)	2137, 2941
HpaI	GTTAAC	2 cut(s)	1857, 3009
HpaII	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3024
HphI	GGTGA	5 cut(s)	683, 1119, 2273, 2315, 2687
Hpy99I	CGWCG	2 cut(s)	80, 137
HpyAV	CCTTC	8 cut(s)	37, 100, 184, 268, 657, 1868, 2524, 2790
HpyCH4IV	ACGT	7 cut(s)	199, 460, 472, 1407, 1918, 2424, 3054
HpyF10VI	GCNNNNNNNGC	6 cut(s)	221, 1094, 1106, 1178, 2867, 2906
HpySE526I	ACGT	7 cut(s)	199, 460, 472, 1407, 1918, 2424, 3054
HspAI	GCGC	1 cut(s)	7
Kpn2I	TCCGGA	2 cut(s)	33, 151
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	1942
KspAI	GTTAAC	2 cut(s)	1857, 3009
LmnI	GCTCC	6 cut(s)	109, 115, 121, 565, 847, 2150
Lsp1109I	GCAGC	7 cut(s)	16, 1084, 1240, 1689, 1979, 2884, 3082
MaeI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2042, 2300
MaeII	ACGT	7 cut(s)	199, 460, 472, 1407, 1918, 2424, 3054
MaeIII	GTNAC	8 cut(s)	419, 922, 1125, 1555, 1979, 2128, 2420, 2789
MfeI	CAATTG	1 cut(s)	1214
MflI	RGATCY	6 cut(s)	137, 154, 1590, 1648, 2117, 2874
MhlI	GDGCHC	1 cut(s)	1161
MlsI	TGGCCA	2 cut(s)	840, 3101
MluNI	TGGCCA	2 cut(s)	840, 3101
MlyI	GAGTC	3 cut(s)	230, 1213, 1813
MmeI	TCCRAC	2 cut(s)	115, 2914
Mox20I	TGGCCA	2 cut(s)	840, 3101
Mph1103I	ATGCAT	3 cut(s)	264, 411, 1540
MroI	TCCGGA	2 cut(s)	33, 151
MroNI	GCCGGC	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	1811
MscI	TGGCCA	2 cut(s)	840, 3101
MslI	CAYNNNNRTG	2 cut(s)	312, 2727
Msp20I	TGGCCA	2 cut(s)	840, 3101
MspA1I	CMGCKG	2 cut(s)	1970, 2413
MspI	CCGG	8 cut(s)	34, 47, 69, 152, 212, 310, 449, 3024
MspR9I	CCNGG	3 cut(s)	450, 669, 1390
MunI	CAATTG	1 cut(s)	1214
Mva1269I	GAATGC	1 cut(s)	2531
MvaI	CCWGG	2 cut(s)	669, 1390
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	6 cut(s)	221, 1094, 1106, 1178, 2867, 2906
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	2632
NgoMIV	GCCGGC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	611
NlaIV	GGNNCC	8 cut(s)	139, 172, 195, 331, 567, 1674, 2482, 2876
NmuCI	GTSAC	6 cut(s)	419, 922, 1125, 1555, 1979, 2789
NsiI	ATGCAT	3 cut(s)	264, 411, 1540
NspI	RCATGY	6 cut(s)	2093, 2391, 2558, 2732, 2754, 2835
NspV	TTCGAA	1 cut(s)	1304
PaeI	GCATGC	1 cut(s)	2835
PagI	TCATGA	2 cut(s)	2002, 2496
PceI	AGGCCT	2 cut(s)	667, 1833
PciI	ACATGT	1 cut(s)	2387
PcsI	WCGNNNNNNNCGW	2 cut(s)	420, 478
PctI	GAATGC	1 cut(s)	2531
PdiI	GCCGGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	1811
PflMI	CCANNNNNTGG	3 cut(s)	326, 1778, 2800
PinAI	ACCGGT	1 cut(s)	3023
PkrI	GCNGC	9 cut(s)	6, 103, 1099, 1230, 1575, 1704, 1969, 2899, 3072
PleI	GAGTC	3 cut(s)	230, 1213, 1813
PpsI	GAGTC	3 cut(s)	230, 1213, 1813
Ppu21I	YACGTR	2 cut(s)	473, 2425
PscI	ACATGT	1 cut(s)	2387
PshAI	GACNNNNGTC	1 cut(s)	2081
PshBI	ATTAAT	2 cut(s)	390, 1623
PsiI	TTATAA	2 cut(s)	1446, 3033
Psp6I	CCWGG	2 cut(s)	667, 1388
PspFI	CCCAGC	3 cut(s)	2409, 2413, 2870
PspGI	CCWGG	2 cut(s)	667, 1388
PspN4I	GGNNCC	8 cut(s)	139, 172, 195, 331, 567, 1674, 2482, 2876
PspPI	GGNCC	6 cut(s)	437, 956, 1322, 1517, 2348, 2949
PstI	CTGCAG	1 cut(s)	2672
PstNI	CAGNNNCTG	4 cut(s)	208, 1205, 1477, 2024
PsuI	RGATCY	6 cut(s)	137, 154, 1590, 1648, 2117, 2874
PvuII	CAGCTG	2 cut(s)	1970, 2413
RsaI	GTAC	6 cut(s)	346, 1193, 1338, 1369, 1528, 2512
RsaNI	GTAC	6 cut(s)	345, 1192, 1337, 1368, 1527, 2511
RseI	CAYNNNNRTG	2 cut(s)	312, 2727
SalI	GTCGAC	1 cut(s)	1004
SatI	GCNGC	9 cut(s)	5, 102, 1098, 1229, 1574, 1703, 1968, 2898, 3071
Sau96I	GGNCC	6 cut(s)	437, 956, 1322, 1517, 2348, 2949
ScaI	AGTACT	1 cut(s)	1193
SchI	GAGTC	3 cut(s)	230, 1213, 1813
ScrFI	CCNGG	3 cut(s)	450, 669, 1390
SduI	GDGCHC	1 cut(s)	1161
SfcI	CTRYAG	2 cut(s)	1971, 2668
SfuI	TTCGAA	1 cut(s)	1304
SinI	GGWCC	5 cut(s)	437, 1322, 1517, 2348, 2949
SmiMI	CAYNNNNRTG	2 cut(s)	312, 2727
SmlI	CTYRAG	3 cut(s)	560, 868, 1487
SmoI	CTYRAG	3 cut(s)	560, 868, 1487
SphI	GCATGC	1 cut(s)	2835
SseBI	AGGCCT	2 cut(s)	667, 1833
SsiI	CCGC	7 cut(s)	66, 101, 182, 1573, 2133, 2699, 2726
SspI	AATATT	2 cut(s)	952, 2230
SspMI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2042, 2300
StuI	AGGCCT	2 cut(s)	667, 1833
StyD4I	CCNGG	3 cut(s)	448, 667, 1388
StyI	CCWWGG	1 cut(s)	589
TaiI	ACGT	7 cut(s)	202, 463, 475, 1410, 1921, 2427, 3057
TatI	WGTACW	1 cut(s)	1191
TauI	GCSGC	2 cut(s)	104, 1576
TscAI	CASTG	9 cut(s)	1084, 1188, 1215, 1230, 1536, 1936, 2491, 2959, 3009
TseFI	GTSAC	6 cut(s)	419, 922, 1125, 1555, 1979, 2789
TseI	GCWGC	7 cut(s)	4, 1097, 1228, 1702, 1967, 2897, 3070
Tsp45I	GTSAC	6 cut(s)	419, 922, 1125, 1555, 1979, 2789
TspGWI	ACGGA	1 cut(s)	2546
TspRI	CASTG	9 cut(s)	1084, 1188, 1215, 1230, 1536, 1936, 2491, 2959, 3009
Van91I	CCANNNNNTGG	3 cut(s)	326, 1778, 2800
VpaK11BI	GGWCC	5 cut(s)	437, 1322, 1517, 2348, 2949
VspI	ATTAAT	2 cut(s)	390, 1623
XapI	RAATTY	6 cut(s)	217, 483, 515, 1306, 2711, 2969
XceI	RCATGY	6 cut(s)	2093, 2391, 2558, 2732, 2754, 2835
XmiI	GTMKAC	1 cut(s)	1005
XmnI	GAANNNNTTC	1 cut(s)	1811
XspI	CTAG	7 cut(s)	252, 464, 540, 612, 824, 2042, 2300
ZrmI	AGTACT	1 cut(s)	1193
Zsp2I	ATGCAT	3 cut(s)	264, 411, 1540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.