Rorug02G0084900

N-terminal region of micro-spherule protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010517
Physical Location & Seq
Forward (+)
6809667 .. 6810902
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0084900.1

Sequence Viewer

Length: 1074 bp
ATGCACACTCTAACAAGATCATCCTTAGAAACTGTAGGGCGTTGCAGATCGATTTCAAAGGAGTGGAATCGAGTCACATACGAATCAAGCTTCCATCAACTACTTTGCGAGAGAACTGACATAGTTTCTGGATTTTTCATTCAAAGCCTAGTTGACTCCCAACACTCATCCACGTTTGTGTCGCTGGTTAATAATGTCAACTTCACCTCGGCACTGTCATTGGATTTTCTAAACATTCCTGTCCGAATTGAAGCTGTGAATCAAGGTCTACTCGTGTGTGTCAACCAGAACAAGAGGTATTTGGTTTGTAAGCCTACTACGAAACAGTGGGTAAAGATACCGAATCCAAAAACCAAGTACGAGACTGCAAGCACTGCCCTGCTCGTGTTGAAGTCGAAGCCTTTGAAATACAAGGTGATTCGATTCTCGGAACTCAAGGTATTAGTCAAGCACAACTCTGAATGGTGGCGCCATCTTAGGTGCGAGATTTTTGATTCCGTCACATGGGCATGGAAGCGGTCAAAGGATGTGATTCTACCTTCTAATGTTTTCTTTGCAAGTAAACAAAATTCTGTTGTGGCAGCAAATGGTGGTCTCCATTGGCTTCTGTCAAGTAACCAAGTATTTGCTTTCTATGAAGATGCAGAGAATTGGGAAATGTTCTCATTGCCACCCTTGGCAATCGATAATGCAGGTTACAACTCCAAGCTACTACTTGTGGAGTACAAAGGTCAGCTTGCGTTGATTCGGAGTGGAGAAGAATTCATGGACATGTGGGTGATGGAAAATTATGCCAGAAAGTCATGGAGCCAGAGGCGGCCATGGAACATCAACAAACTCAGGGGAGAAGAAACCTACTATATTTCTCCATTAGCTTTCCATAATGGTGACACTGCACTTATGGAAGGTTTTCACAAATCGGACATGGAGGAGGTCAATCTGAATGGACCTGATTGTGTTTTCAAGCTCCAGTCGGACTCAGAGAATGTTAATCTAAAGGACCATCCTGAAGAAACTCGAGGTGCTATTCTCATGCATGAGTACAGATTTATGATTACATGGGAACCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0002151 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016579 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030234 GO:0030425 GO:0031011 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033202 GO:0034046 GO:0034708 GO:0035097 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043086 GO:0043170 GO:0043204 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044463 GO:0044464 GO:0044665 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070603 GO:0070646 GO:0070647 GO:0070717 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097346 GO:0097447 GO:0097458 GO:0098772 GO:0120025 GO:0120038 GO:1900180 GO:1900182 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904749 GO:1904751 GO:1904949 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
FHA MCRS_N

Protein Analysis

357

Amino Acids

41.39

Weight (kDa)

8.12

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 54 - 273 2.5e-12 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 85 - 327 2.7e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 468
AccI GTMKAC 1 cut(s) 268
AciI CCGC 2 cut(s) 517, 817
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 2 cut(s) 568, 761
AcuI CTGAAG 1 cut(s) 1029
AcyI GRCGYC 1 cut(s) 469
AfaI GTAC 3 cut(s) 359, 725, 1043
AfiI CCNNNNNNNGG 1 cut(s) 504
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 6 cut(s) 57, 143, 251, 391, 406, 964
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 6 cut(s) 90, 254, 709, 736, 875, 967
AluI AGCT 6 cut(s) 90, 254, 709, 736, 875, 967
Alw26I GTCTC 2 cut(s) 356, 599
Ama87I CYCGRG 1 cut(s) 1017
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 2 cut(s) 568, 761
Asp700I GAANNNNTTC 1 cut(s) 909
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 947, 1000
AsuHPI GGTGA 4 cut(s) 196, 427, 790, 899
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 2 cut(s) 947, 1000
BanI GGYRCC 1 cut(s) 468
BauI CACGAG 2 cut(s) 272, 383
BbvI GCAGC 1 cut(s) 593
BccI CCATC 4 cut(s) 102, 480, 775, 1011
BcoDI GTCTC 2 cut(s) 356, 599
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 472
BfuAI ACCTGC 1 cut(s) 683
BisI GCNGC 2 cut(s) 582, 818
BlsI GCNGC 2 cut(s) 583, 819
Bme18I GGWCC 2 cut(s) 947, 1000
BmeT110I CYCGRG 1 cut(s) 1017
BmgT120I GGNCC 2 cut(s) 947, 1000
BmiI GGNNCC 3 cut(s) 470, 809, 1065
BmsI GCATC 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 953
BpuEI CTTGAG 1 cut(s) 419
Bsa29I ATCGAT 2 cut(s) 50, 684
BsaHI GRCGYC 1 cut(s) 469
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 207, 675, 821
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse1I ACTGG 2 cut(s) 970, 1067
Bse3DI GCAATG 1 cut(s) 665
BseCI ATCGAT 2 cut(s) 50, 684
BseDI CCNNGG 3 cut(s) 207, 675, 821
BseGI GGATG 4 cut(s) 20, 167, 532, 1003
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 2 cut(s) 853, 993
BseNI ACTGG 2 cut(s) 970, 1067
BseRI GAGGAG 1 cut(s) 944
BseXI GCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 879
BshFI GGCC 1 cut(s) 820
BshNI GGYRCC 1 cut(s) 468
BshVI ATCGAT 2 cut(s) 50, 684
BsiHKCI CYCGRG 1 cut(s) 1017
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 2 cut(s) 356, 599
BsnI GGCC 1 cut(s) 820
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 1017
Bsp143I GATC 2 cut(s) 17, 47
Bsp19I CCATGG 1 cut(s) 821
BspACI CCGC 2 cut(s) 517, 817
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 2 cut(s) 852, 992
BspDI ATCGAT 2 cut(s) 50, 684
BspLI GGNNCC 3 cut(s) 470, 809, 1065
BspMI ACCTGC 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 2 cut(s) 970, 1067
BssECI CCNNGG 3 cut(s) 207, 675, 821
BssMI GATC 2 cut(s) 17, 47
BssNI GRCGYC 1 cut(s) 469
BssSI CACGAG 2 cut(s) 272, 383
BssT1I CCWWGG 2 cut(s) 675, 821
Bst2BI CACGAG 2 cut(s) 272, 383
Bst4CI ACNGT 3 cut(s) 34, 216, 327
BstACI GRCGYC 1 cut(s) 469
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 370, 738
BstDEI CTNAG 4 cut(s) 25, 476, 839, 979
BstDSI CCRYGG 1 cut(s) 821
BstF5I GGATG 4 cut(s) 20, 167, 532, 1003
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 20, 50
BstMAI GTCTC 2 cut(s) 356, 599
BstMBI GATC 2 cut(s) 17, 47
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 775
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 593
Bsu15I ATCGAT 2 cut(s) 50, 684
BsuRI GGCC 1 cut(s) 820
BsuTUI ATCGAT 2 cut(s) 50, 684
BtgI CCRYGG 1 cut(s) 821
BtsCI GGATG 4 cut(s) 20, 167, 532, 1003
BtsI GCAGTG 2 cut(s) 372, 891
BtsIMutI CAGTG 4 cut(s) 212, 332, 372, 891
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 2 cut(s) 370, 738
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 947, 1000
ClaI ATCGAT 2 cut(s) 50, 684
Csp6I GTAC 3 cut(s) 358, 724, 1042
CviQI GTAC 3 cut(s) 358, 724, 1042
DdeI CTNAG 4 cut(s) 25, 476, 839, 979
DinI GGCGCC 1 cut(s) 470
DpnI GATC 2 cut(s) 19, 49
DpnII GATC 2 cut(s) 17, 47
EaeI YGGCCR 1 cut(s) 818
Eco130I CCWWGG 2 cut(s) 675, 821
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 2 cut(s) 947, 1000
Eco57I CTGAAG 1 cut(s) 1029
Eco88I CYCGRG 1 cut(s) 1017
EcoRI GAATTC 1 cut(s) 761
EcoT14I CCWWGG 2 cut(s) 675, 821
EcoT22I ATGCAT 1 cut(s) 1038
EgeI GGCGCC 1 cut(s) 470
EheI GGCGCC 1 cut(s) 470
ErhI CCWWGG 2 cut(s) 675, 821
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 582, 818
FokI GGATG 4 cut(s) 7, 154, 539, 990
Fsp4HI GCNGC 2 cut(s) 582, 818
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 470
GluI GCNGC 2 cut(s) 582, 818
GsuI CTGGAG 1 cut(s) 953
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 1 cut(s) 820
HhaI GCGC 1 cut(s) 471
Hin1I GRCGYC 1 cut(s) 469
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 3 cut(s) 154, 199, 283
HindII GTYRAC 3 cut(s) 154, 199, 283
HindIII AAGCTT 1 cut(s) 88
HphI GGTGA 4 cut(s) 196, 427, 790, 899
Hpy166II GTNNAC 5 cut(s) 154, 199, 269, 283, 563
Hpy188I TCNGA 8 cut(s) 245, 430, 460, 750, 922, 942, 976, 982
Hpy188III TCNNGA 2 cut(s) 129, 1007
Hpy8I GTNNAC 5 cut(s) 154, 199, 269, 283, 563
HpyAV CCTTC 2 cut(s) 549, 899
HpyCH4III ACNGT 3 cut(s) 34, 216, 327
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 8 cut(s) 4, 45, 368, 557, 644, 692, 896, 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 4 cut(s) 25, 476, 839, 979
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 469
HspAI GCGC 1 cut(s) 469
KasI GGCGCC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 17, 47
LmnI GCTCC 2 cut(s) 807, 972
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 1 cut(s) 631
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 5 cut(s) 73, 499, 614, 695, 887
MalI GATC 2 cut(s) 19, 49
MboI GATC 2 cut(s) 17, 47
MboII GAAGA 4 cut(s) 650, 770, 860, 1022
MluCI AATT 5 cut(s) 246, 568, 649, 761, 787
Mly113I GGCGCC 1 cut(s) 469
MlyI GAGTC 3 cut(s) 81, 149, 971
MmeI TCCRAC 1 cut(s) 954
MnlI CCTC 6 cut(s) 217, 288, 807, 922, 925, 1013
Mph1103I ATGCAT 1 cut(s) 1038
MroXI GAANNNNTTC 1 cut(s) 909
MseI TTAA 2 cut(s) 189, 990
MslI CAYNNNNRTG 5 cut(s) 176, 508, 770, 776, 885
MwoI GCNNNNNNNGC 1 cut(s) 374
NarI GGCGCC 1 cut(s) 469
NcoI CCATGG 1 cut(s) 821
NdeII GATC 2 cut(s) 17, 47
NlaIV GGNNCC 3 cut(s) 470, 809, 1065
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 73, 499, 887
NsiI ATGCAT 1 cut(s) 1038
NspI RCATGY 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 1017
PciI ACATGT 1 cut(s) 771
PdmI GAANNNNTTC 1 cut(s) 909
PfeI GAWTC 9 cut(s) 67, 83, 259, 343, 418, 423, 494, 532, 745
PkrI GCNGC 2 cut(s) 583, 819
PleI GAGTC 3 cut(s) 80, 149, 971
PluTI GGCGCC 1 cut(s) 472
PpsI GAGTC 3 cut(s) 80, 149, 971
PscI ACATGT 1 cut(s) 771
PspN4I GGNNCC 3 cut(s) 470, 809, 1065
PspPI GGNCC 2 cut(s) 947, 1000
PspXI VCTCGAGB 1 cut(s) 1017
RsaI GTAC 3 cut(s) 359, 725, 1043
RsaNI GTAC 3 cut(s) 358, 724, 1042
RseI CAYNNNNRTG 5 cut(s) 176, 508, 770, 776, 885
SaqAI TTAA 2 cut(s) 189, 990
SatI GCNGC 2 cut(s) 582, 818
Sau3AI GATC 2 cut(s) 17, 47
Sau96I GGNCC 2 cut(s) 947, 1000
SchI GAGTC 3 cut(s) 81, 149, 971
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 33
SfoI GGCGCC 1 cut(s) 470
Sfr274I CTCGAG 1 cut(s) 1017
SinI GGWCC 2 cut(s) 947, 1000
SlaI CTCGAG 1 cut(s) 1017
SmiMI CAYNNNNRTG 5 cut(s) 176, 508, 770, 776, 885
SmlI CTYRAG 2 cut(s) 434, 1017
SmoI CTYRAG 2 cut(s) 434, 1017
Sse9I AATT 5 cut(s) 246, 568, 649, 761, 787
SsiI CCGC 2 cut(s) 517, 817
SspDI GGCGCC 1 cut(s) 468
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 2 cut(s) 675, 821
TaaI ACNGT 3 cut(s) 34, 216, 327
TaiI ACGT 1 cut(s) 176
TaqI TCGA 6 cut(s) 50, 70, 395, 421, 684, 1018
TasI AATT 5 cut(s) 246, 568, 649, 761, 787
TatI WGTACW 2 cut(s) 723, 1041
TauI GCSGC 1 cut(s) 820
TfiI GAWTC 9 cut(s) 67, 83, 259, 343, 418, 423, 494, 532, 745
Tru1I TTAA 2 cut(s) 189, 990
Tru9I TTAA 2 cut(s) 189, 990
TscAI CASTG 4 cut(s) 219, 332, 379, 898
TseFI GTSAC 3 cut(s) 73, 499, 887
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 3 cut(s) 73, 499, 887
TspDTI ATGAA 3 cut(s) 127, 651, 754
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 4 cut(s) 219, 332, 379, 898
VpaK11BI GGWCC 2 cut(s) 947, 1000
XapI RAATTY 2 cut(s) 568, 761
XceI RCATGY 1 cut(s) 775
XhoI CTCGAG 1 cut(s) 1017
XmiI GTMKAC 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 909
XspI CTAG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.