Rorug02G0197800

Belongs to the MICOS complex subunit Mic60 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011414
Physical Location & Seq
Forward (+)
18434943 .. 18437557
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0197800.1

Sequence Viewer

Length: 1365 bp
ATGCCTATGTTTCAGCCCTCAAAGAGGGATGGGGTTGCTGGGTTTGATGGTGGAGGAGATGGGCATGTTCTAGATCTGGACACAGCTGTGAAAGATGGGGTTTTGGGTGGTGGTGGTGGTGGTGTTGATGTTGGTGGGGTTGTGGCAACTGGTGTTGGTGAGAAATTGGATCTGAGGAAGATGATTGAGGAGCTTGACTTGTCTGAGGTTCCTTCTGTGTTTATTTGCCCAATTTCTCTTGAGCCAATGCAAGACCCTGTGACCCTTTGCACTGGGCAAACCTATGAGAAGTCCAACATTCTCAAGTGGTTCAATTTGGGGCACCTCACCTGTCCAACCACAATGCAGGAGCTTTGGGATGATTCCGTGACCCCGAATAGGACCCTTTACCATCTAATCTACACCTGGTTTTCGCAGAAGTATCTGCTCATGAAGAAGAAGTCTGAAGATGTTCAGGGAAGGGCTGCAGAGCTTGTGGAGACGCTGAAGAAGGTGAAGGGTCAAGCTAGGGTGCAAGCCCTCAAGGAGTTGCATCAAGTTGTGGGGGCTCATGCCACTGCTAGGAAGACATTGATTGATAAAGGTGGGATTGCTGTAGTTTCGTCTCTGTTGGGTCCATTTACTTCACATGTTGTAGGTTCGATAGCCATTGCAATTCTTGTGAATTTGTCACTTGATTCGGAGTCCAGAACGAATTTGATGCAACCGGCAAAGATTTCTTTGATGGTGGACATTTTGAACGAGGGGTCAATTGAGACGAAAATCAATTGTACCCGGTTGATCAAAATGTTAATGGAGGAGAAGGATTTTCGATCAGAAATTGTTTCGAGCCATAGCCTCCTGGTTGGAATAATGAGGCTGGTTAAAGATAAGAGACATACTGTTGGAGTCTTGCCAGGACTGAGCCTCCTCAGAACAATATGCTTGCATGAGGAAGCGAGGGGCTTGATAGTGAGCATTGGAGCTGTACCGCAATTGGTTGAATGTTTGCCTTCTCTGGACCACGAATGTTTAGAATTAGCCCTTTTCGTATTGGATGCATTGTCATCTCTACCACAGGGAGTATTAGCGTTGAAAGATTGTTCGAAGACTATACCGAATATGGTGAGGGTTCTGATGAGAATTTCAGAGAGTTGTACTCAATATGCGTTGTCAATCTTATCATCTATATGCAAACTTGCCCCTGAGGAATGTTCATCAATTGCCTTGGATGCCGGTCTAGCAGCAAAGCTCCTCCTCGTGATCCAGAGTTGTAGTGATCCTGTCTTGAAGCAGCAATCCTCAGAGCTGTTGAAGCTGTGTAGTCTAAACTATTCTGATACAATATTCATTTCCAAGTGCAAGCTTACAAGGACAATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mitofilin

Protein Analysis

454

Amino Acids

49.26

Weight (kDa)

6.23

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 70 - 140 1.1e-13 U-box domain
ARM_PUB PF25598 158 - 454 4e-81 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39690
fragaria_vesca FvH4_1g21670 FvH4_1g21670 FvH4_1g21670
malus_domestica MD01G1023900.v1.1 MD15G1329400.v1.1
prunus_persica Prupe.6G178900_v2.0.a1
pyrus_communis pycom01g05150
rosa_chinensis RchiOBHm_Chr2g0115541
rosa_laevigata RLG00000018192
rosa_multiflora Rmu_ssc0000197.1_g000091
rosa_roxburghii Rroxscaffold_2G00128120 Rroxscaffold_2G00128990
rosa_rugosa Rorug02G0197700 Rorug02G0197800
rosa_samantha Rh2AG255100 Rh2BG266000 Rh2CG260300 Rh2DG263300
rosa_wichuraiana Rw2G019970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 321
AciI CCGC 1 cut(s) 971
AclWI GGATC 3 cut(s) 177, 1237, 1253
AcsI RAATTY 3 cut(s) 664, 694, 1122
AcuI CTGAAG 2 cut(s) 465, 506
AfaI GTAC 3 cut(s) 772, 969, 1138
AfiI CCNNNNNNNGG 3 cut(s) 24, 378, 561
AflIII ACRYGT 1 cut(s) 628
AgsI TTSAA 7 cut(s) 313, 739, 983, 1075, 1270, 1294, 1361
AjnI CCWGG 3 cut(s) 404, 840, 895
AleI CACNNNNGTG 1 cut(s) 86
Alw26I GTCTC 4 cut(s) 473, 609, 749, 868
AlwI GGATC 3 cut(s) 177, 1237, 1253
ApeKI GCWGC 3 cut(s) 464, 1223, 1273
ApoI RAATTY 3 cut(s) 664, 694, 1122
Asp700I GAANNNNTTC 1 cut(s) 450
AspS9I GGNCC 3 cut(s) 381, 614, 1000
AsuC2I CCSGG 1 cut(s) 775
AsuHPI GGTGA 4 cut(s) 170, 319, 505, 1117
AsuII TTCGAA 1 cut(s) 1085
AvaII GGWCC 3 cut(s) 381, 614, 1000
AxyI CCTNAGG 1 cut(s) 1185
BaeGI GKGCMC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 1238
BbsI GAAGAC 2 cut(s) 572, 1094
BbvI GCAGC 3 cut(s) 451, 1235, 1285
BccI CCATC 6 cut(s) 23, 41, 53, 89, 399, 718
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 3 cut(s) 406, 842, 897
BclI TGATCA 1 cut(s) 780
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 4 cut(s) 473, 609, 749, 868
BfaI CTAG 4 cut(s) 71, 507, 561, 1220
BfmI CTRYAG 2 cut(s) 465, 594
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 465, 1224, 1274
BlsI GCNGC 3 cut(s) 466, 1225, 1275
Bme1390I CCNGG 4 cut(s) 406, 775, 842, 897
Bme18I GGWCC 3 cut(s) 381, 614, 1000
BmgT120I GGNCC 3 cut(s) 381, 614, 1000
BmiI GGNNCC 4 cut(s) 210, 323, 383, 615
BmrFI CCNGG 4 cut(s) 406, 775, 842, 897
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 4 cut(s) 541, 690, 1027, 1201
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 2 cut(s) 572, 1094
BplI GAGNNNNNCTC 2 cut(s) 1123, 1155
Bpu14I TTCGAA 1 cut(s) 1085
BpuEI CTTGAG 3 cut(s) 260, 287, 506
BpuMI CCSGG 1 cut(s) 775
BsaJI CCNNGG 1 cut(s) 1206
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 378, 561
Bse118I RCCGGY 2 cut(s) 706, 1214
Bse1I ACTGG 2 cut(s) 154, 277
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 3 cut(s) 406, 842, 897
BseDI CCNNGG 1 cut(s) 1206
BseGI GGATG 4 cut(s) 34, 364, 1042, 1216
BseLI CCNNNNNNNGG 3 cut(s) 24, 378, 561
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 6 cut(s) 164, 195, 893, 925, 1176, 1296
BseNI ACTGG 2 cut(s) 154, 277
BseRI GAGGAG 6 cut(s) 69, 203, 812, 899, 1223, 1226
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 3 cut(s) 451, 1235, 1285
BseYI CCCAGC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 321
BsiSI CCGG 3 cut(s) 707, 775, 1215
BslI CCNNNNNNNGG 3 cut(s) 24, 378, 561
BsmAI GTCTC 4 cut(s) 473, 609, 749, 868
BsmBI CGTCTC 3 cut(s) 473, 609, 749
Bsp119I TTCGAA 1 cut(s) 1085
Bsp1286I GDGCHC 2 cut(s) 324, 550
Bsp143I GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
BspACI CCGC 1 cut(s) 971
BspCNI CTCAG 6 cut(s) 165, 196, 894, 924, 1177, 1295
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 4 cut(s) 210, 323, 383, 615
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 3 cut(s) 177, 1237, 1253
BspT104I TTCGAA 1 cut(s) 1085
BspT107I GGYRCC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 2 cut(s) 706, 1214
BsrI ACTGG 2 cut(s) 154, 277
BssAI RCCGGY 2 cut(s) 706, 1214
BssECI CCNNGG 1 cut(s) 1206
BssMI GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
BssSI CACGAG 1 cut(s) 1238
BssT1I CCWWGG 1 cut(s) 1206
Bst2BI CACGAG 1 cut(s) 1238
Bst2UI CCWGG 3 cut(s) 406, 842, 897
Bst4CI ACNGT 1 cut(s) 883
BstBI TTCGAA 1 cut(s) 1085
BstC8I GCNNGC 3 cut(s) 516, 926, 1343
BstDEI CTNAG 6 cut(s) 173, 204, 902, 911, 1185, 1282
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 4 cut(s) 34, 364, 1042, 1216
BstKTI GATC 6 cut(s) 76, 172, 783, 815, 1245, 1261
BstMAI GTCTC 4 cut(s) 473, 609, 749, 868
BstMBI GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
BstMWI GCNNNNNNNGC 3 cut(s) 1211, 1220, 1294
BstNI CCWGG 3 cut(s) 406, 842, 897
BstNSI RCATGY 2 cut(s) 68, 632
BstSCI CCNGG 4 cut(s) 404, 773, 840, 895
BstSFI CTRYAG 2 cut(s) 465, 594
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 451, 1235, 1285
BstV2I GAAGAC 2 cut(s) 572, 1094
BstX2I RGATCY 2 cut(s) 73, 169
BstYI RGATCY 2 cut(s) 73, 169
Bsu36I CCTNAGG 1 cut(s) 1185
BtsCI GGATG 4 cut(s) 34, 364, 1042, 1216
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 270, 555
Cac8I GCNNGC 3 cut(s) 516, 926, 1343
CciI TCATGA 1 cut(s) 429
Cfr10I RCCGGY 2 cut(s) 706, 1214
Cfr13I GGNCC 3 cut(s) 381, 614, 1000
CseI GACGC 1 cut(s) 490
CsiI ACCWGGT 1 cut(s) 404
Csp6I GTAC 3 cut(s) 771, 968, 1137
CviAII CATG 5 cut(s) 65, 430, 551, 629, 929
CviQI GTAC 3 cut(s) 771, 968, 1137
DdeI CTNAG 6 cut(s) 173, 204, 902, 911, 1185, 1282
DpnI GATC 6 cut(s) 75, 171, 782, 814, 1244, 1260
DpnII GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
Eco130I CCWWGG 1 cut(s) 1206
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 3 cut(s) 381, 614, 1000
Eco57I CTGAAG 2 cut(s) 465, 506
Eco81I CCTNAGG 1 cut(s) 1185
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 381
EcoRII CCWGG 3 cut(s) 404, 840, 895
EcoT14I CCWWGG 1 cut(s) 1206
EcoT22I ATGCAT 1 cut(s) 1042
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 1206
Esp3I CGTCTC 3 cut(s) 473, 609, 749
FaeI CATG 5 cut(s) 68, 433, 554, 632, 932
FatI CATG 5 cut(s) 64, 429, 550, 628, 928
FbaI TGATCA 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 465, 1224, 1274
FokI GGATG 4 cut(s) 41, 371, 1049, 1223
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 3 cut(s) 465, 1224, 1274
FspBI CTAG 4 cut(s) 71, 507, 561, 1220
GluI GCNGC 3 cut(s) 465, 1224, 1274
GsaI CCCAGC 1 cut(s) 42
HapII CCGG 3 cut(s) 707, 775, 1215
HgaI GACGC 1 cut(s) 490
Hin1II CATG 5 cut(s) 68, 433, 554, 632, 932
HindIII AAGCTT 1 cut(s) 1343
HinfI GANTC 4 cut(s) 362, 677, 683, 888
HpaII CCGG 3 cut(s) 707, 775, 1215
HphI GGTGA 4 cut(s) 170, 319, 505, 1117
Hpy166II GTNNAC 1 cut(s) 730
Hpy188III TCNNGA 9 cut(s) 71, 77, 239, 430, 687, 998, 1240, 1246, 1267
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 6 cut(s) 222, 453, 484, 490, 796, 1002
HpyCH4III ACNGT 1 cut(s) 883
HpyF10VI GCNNNNNNNGC 3 cut(s) 1211, 1220, 1294
HpyF3I CTNAG 6 cut(s) 173, 204, 902, 911, 1185, 1282
Hsp92II CATG 5 cut(s) 68, 433, 554, 632, 932
Ksp22I TGATCA 1 cut(s) 780
Kzo9I GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
LmnI GCTCC 4 cut(s) 190, 349, 962, 1236
Lsp1109I GCAGC 3 cut(s) 451, 1235, 1285
LweI GCATC 4 cut(s) 541, 690, 1027, 1201
MabI ACCWGGT 1 cut(s) 404
MaeI CTAG 4 cut(s) 71, 507, 561, 1220
MaeIII GTNAC 3 cut(s) 259, 367, 669
MalI GATC 6 cut(s) 75, 171, 782, 814, 1244, 1260
MboI GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
MboII GAAGA 7 cut(s) 190, 445, 448, 458, 499, 577, 1099
MfeI CAATTG 4 cut(s) 750, 766, 974, 1200
MflI RGATCY 2 cut(s) 73, 169
MhlI GDGCHC 2 cut(s) 324, 550
MlyI GAGTC 2 cut(s) 692, 897
MmeI TCCRAC 4 cut(s) 318, 359, 826, 865
Mph1103I ATGCAT 1 cut(s) 1042
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 2 cut(s) 791, 864
MslI CAYNNNNRTG 2 cut(s) 86, 1168
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 707, 775, 1215
MspR9I CCNGG 4 cut(s) 406, 775, 842, 897
MunI CAATTG 4 cut(s) 750, 766, 974, 1200
MvaI CCWGG 3 cut(s) 406, 842, 897
MwoI GCNNNNNNNGC 3 cut(s) 1211, 1220, 1294
NciI CCSGG 1 cut(s) 775
NdeII GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
NlaIII CATG 5 cut(s) 68, 433, 554, 632, 932
NlaIV GGNNCC 4 cut(s) 210, 323, 383, 615
NmuCI GTSAC 3 cut(s) 259, 367, 669
NsiI ATGCAT 1 cut(s) 1042
NspI RCATGY 2 cut(s) 68, 632
NspV TTCGAA 1 cut(s) 1085
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 1 cut(s) 429
PciI ACATGT 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 2 cut(s) 362, 677
PkrI GCNGC 3 cut(s) 466, 1225, 1275
PleI GAGTC 2 cut(s) 691, 896
PpsI GAGTC 2 cut(s) 691, 896
PpuMI RGGWCCY 1 cut(s) 381
PscI ACATGT 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 3 cut(s) 404, 840, 895
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 3 cut(s) 404, 840, 895
PspN4I GGNNCC 4 cut(s) 210, 323, 383, 615
PspPI GGNCC 3 cut(s) 381, 614, 1000
PspPPI RGGWCCY 1 cut(s) 381
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 2 cut(s) 73, 169
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 3 cut(s) 772, 969, 1138
RsaNI GTAC 3 cut(s) 771, 968, 1137
RseI CAYNNNNRTG 2 cut(s) 86, 1168
SaqAI TTAA 2 cut(s) 791, 864
SatI GCNGC 3 cut(s) 465, 1224, 1274
Sau3AI GATC 6 cut(s) 73, 169, 780, 812, 1242, 1258
Sau96I GGNCC 3 cut(s) 381, 614, 1000
SchI GAGTC 2 cut(s) 692, 897
ScrFI CCNGG 4 cut(s) 406, 775, 842, 897
SduI GDGCHC 2 cut(s) 324, 550
SexAI ACCWGGT 1 cut(s) 404
SfaNI GCATC 4 cut(s) 541, 690, 1027, 1201
SfcI CTRYAG 2 cut(s) 465, 594
SfuI TTCGAA 1 cut(s) 1085
SinI GGWCC 3 cut(s) 381, 614, 1000
SmiMI CAYNNNNRTG 2 cut(s) 86, 1168
SmlI CTYRAG 3 cut(s) 239, 302, 521
SmoI CTYRAG 3 cut(s) 239, 302, 521
SsiI CCGC 1 cut(s) 971
SspI AATATT 1 cut(s) 1326
SspMI CTAG 4 cut(s) 71, 507, 561, 1220
StyD4I CCNGG 4 cut(s) 404, 773, 840, 895
StyI CCWWGG 1 cut(s) 1206
TaaI ACNGT 1 cut(s) 883
TaqI TCGA 4 cut(s) 641, 811, 827, 1085
TatI WGTACW 1 cut(s) 1136
TfiI GAWTC 2 cut(s) 362, 677
Tru1I TTAA 2 cut(s) 791, 864
Tru9I TTAA 2 cut(s) 791, 864
TscAI CASTG 2 cut(s) 277, 562
TseFI GTSAC 3 cut(s) 259, 367, 669
TseI GCWGC 3 cut(s) 464, 1223, 1273
Tsp45I GTSAC 3 cut(s) 259, 367, 669
TspDTI ATGAA 3 cut(s) 446, 1185, 1318
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 2 cut(s) 277, 562
VpaK11BI GGWCC 3 cut(s) 381, 614, 1000
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 3 cut(s) 664, 694, 1122
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 2 cut(s) 68, 632
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 4 cut(s) 71, 507, 561, 1220
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.