Rorug02G0393200

Exportin 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005044
Physical Location & Seq
Reverse (-)
50388412 .. 50391332
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0393200.1

Sequence Viewer

Length: 912 bp
ATGGCTCTTTCACTAACTATTGAGAAAGAATTTGCTCAAACCTCAGAAAGAGTGAAGTCTGTGGATCTGCATCCAACTGAGCCATGGATGCTAGCAAGTTTGTATTCAGGAACTATTTGTATCTGGAACTACCAGTCACAGACCCTGGAGAAGTCCATCAAAGTCACTGAGTCACCAGTCAGATCAGTAAAGTTTGTAGCTCGCAAACACTGGATTATAACTGGGGCTGATGACAAGTTCATTCGGGTATACAACTACAATACTTTGGAAAAGATCAAAGAGTATGAAGCACATACTGACTTTATCAGGAGTGTCACTGTCCATCCAACTCTACCATATCTGCTGTCATGTTCTGATGACAAGGTTATAAAGCTTTGGGACTGGGAGAAGGACTGGGAATGCAGTCAGGTCTTTGAGGGGCATTCCCACTATGTGATGCAAGTGGCTTTCAATCCGAAAGACACCAATAGTTTTGCTAGTGCCTCTCTCGATGGAACCATTAAGACATGGAACATTGGCTCTTCTGCCCCGAATTTTACATTACAAGGCCACTCAAAAGGAGTGAATTGTGTTGATTATTTCATTCACAGCGATAAGACTTACCTGTTAAGTGGTTCTGATGACTTCACTGCCAAGGTATGGGACTATGAAACTACAAGTTGTGTGCAAACTCTAGAAGGTCATGAGAACAATGTAACAACTGTGAGTGTACATCCTGAGCTTCCCATAATAATTACAACTTCTGAGGATGGGACTGTTCATATATGGAATGCAACCACATTTAGTCTGGAGCACAAACTGAACTATGGTCTTGAAAGAGTTTGGGCCATTGGACACATGAAAGGATCATGCAAGGTTGCATTTGGTTTTGACAATGGAACCACTATAGTCAAAATGAATGCTCCTGCTTGA

Protein Analysis

303

Amino Acids

34.31

Weight (kDa)

5.79

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 4 - 171 2.7e-17 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 10 - 175 1.5e-13 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 10 - 155 5.2e-19 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 10 - 114 6.4e-11 THOC3 beta-propeller domain
EIF3I PF24805 13 - 110 1e-06 EIF3I
WDR55 PF24796 14 - 198 8.3e-19 WDR55
WD40_Prp19 PF24814 14 - 136 6.2e-17 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 20 - 173 1.7e-18 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 35 - 195 2.5e-12 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 36 - 223 3.5e-23 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 55 - 172 3.1e-25 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 57 - 131 2.4e-10 WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd PF24782 65 - 171 1.5e-09 MABP1/WDR62 second WD40 domain
Beta-prop_WDR75_1st PF23869 76 - 129 8.9e-06 WD repeat-containing protein 75 first beta-propeller
WD40 PF00400 91 - 127 1.2e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 114 - 190 1.7e-15 THOC3 beta-propeller domain
WD40 PF00400 132 - 171 2.9e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 133 - 281 3.7e-28 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 135 - 185 2.5e-07 WDHD1 first WD40 domain
WD40_Prp19 PF24814 137 - 263 2.5e-21 Prp19 WD40 domain
EIF3I PF24805 138 - 225 1.1e-06 EIF3I
Beta-prop_WDR3_2nd PF25172 153 - 284 1.3e-14 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 154 - 257 1.9e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 154 - 278 3.6e-27 WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 159 - 257 1.8e-07 MABP1/WDR62 second WD40 domain
Beta-prop_SCAP PF24017 161 - 260 4.4e-08 SCAP Beta-propeller
Beta-prop_EML PF23409 166 - 266 9.1e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40 PF00400 177 - 215 5.6e-10 WD domain, G-beta repeat
EIF3I PF24805 180 - 260 1.2e-06 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 180 - 267 4.4e-08 CAF1B/HIR1 beta-propeller domain
WDR55 PF24796 183 - 295 2.8e-11 WDR55
Beta-prop_THOC3 PF25174 184 - 268 4.2e-14 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 188 - 295 4.9e-16 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 194 - 260 3.9e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR75_1st PF23869 195 - 259 7.4e-08 WD repeat-containing protein 75 first beta-propeller
WD40_CDC20-Fz PF24807 196 - 267 1.1e-06 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 198 - 260 2.2e-07 TEP-1 second beta-propeller
WD40 PF00400 220 - 257 9.1e-10 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 218, 368
AccB7I CCANNNNNTGG 1 cut(s) 639
AccI GTMKAC 1 cut(s) 249
AclWI GGATC 2 cut(s) 72, 853
AcsI RAATTY 2 cut(s) 29, 532
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 1 cut(s) 711
AfiI CCNNNNNNNGG 1 cut(s) 639
AgsI TTSAA 2 cut(s) 451, 815
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 3 cut(s) 200, 373, 721
AluI AGCT 3 cut(s) 200, 373, 721
Alw21I GWGCWC 1 cut(s) 795
AlwI GGATC 2 cut(s) 72, 853
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 2 cut(s) 547, 825
ApoI RAATTY 2 cut(s) 29, 532
AspS9I GGNCC 1 cut(s) 825
AsuHPI GGTGA 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 795
BccI CCATC 4 cut(s) 164, 330, 485, 743
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 3 cut(s) 92, 477, 674
BfmI CTRYAG 1 cut(s) 885
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 2 cut(s) 496, 880
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 3 cut(s) 231, 391, 403
BmsI GCATC 3 cut(s) 78, 79, 426
BmtI GCTAGC 1 cut(s) 95
BmuI ACTGGG 3 cut(s) 231, 391, 403
BpmI CTGGAG 2 cut(s) 167, 809
Bpu10I CCTNAGC 1 cut(s) 717
BsaBI GATNNNNATC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 83, 144, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse1I ACTGG 6 cut(s) 133, 176, 215, 226, 386, 398
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 83, 144, 633
BseGI GGATG 5 cut(s) 70, 93, 322, 712, 754
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMII CTCAG 5 cut(s) 57, 69, 159, 708, 735
BseNI ACTGG 6 cut(s) 133, 176, 215, 226, 386, 398
BshFI GGCC 2 cut(s) 549, 827
BsiHKAI GWGCWC 1 cut(s) 795
BslFI GGGAC 3 cut(s) 392, 656, 766
BslI CCNNNNNNNGG 1 cut(s) 639
BsmFI GGGAC 3 cut(s) 392, 656, 766
BsmI GAATGC 4 cut(s) 404, 421, 775, 904
BsnI GGCC 2 cut(s) 549, 827
Bsp1286I GDGCHC 1 cut(s) 795
Bsp1407I TGTACA 1 cut(s) 709
Bsp143I GATC 4 cut(s) 64, 182, 273, 845
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 2 cut(s) 549, 827
BspCNI CTCAG 5 cut(s) 56, 70, 160, 709, 736
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 496, 880
BspOI GCTAGC 1 cut(s) 95
BspPI GGATC 2 cut(s) 72, 853
BspQI GCTCTTC 1 cut(s) 526
BsrGI TGTACA 1 cut(s) 709
BsrI ACTGG 6 cut(s) 133, 176, 215, 226, 386, 398
BssECI CCNNGG 3 cut(s) 83, 144, 633
BssMI GATC 4 cut(s) 64, 182, 273, 845
BssNAI GTATAC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 83, 633
Bst1107I GTATAC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 319, 703, 757
Bst6I CTCTTC 1 cut(s) 526
BstAUI TGTACA 1 cut(s) 709
BstC8I GCNNGC 2 cut(s) 93, 202
BstDEI CTNAG 5 cut(s) 43, 78, 168, 717, 744
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 5 cut(s) 70, 93, 322, 712, 754
BstKTI GATC 4 cut(s) 67, 185, 276, 848
BstMBI GATC 4 cut(s) 64, 182, 273, 845
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 885
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 250
BsuRI GGCC 2 cut(s) 549, 827
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 5 cut(s) 70, 93, 322, 712, 754
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 4 cut(s) 165, 208, 315, 627
Cac8I GCNNGC 2 cut(s) 93, 202
CaiI CAGNNNCTG 1 cut(s) 145
CciI TCATGA 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 710
CviAII CATG 6 cut(s) 84, 348, 507, 683, 838, 849
CviQI GTAC 1 cut(s) 710
DdeI CTNAG 5 cut(s) 43, 78, 168, 717, 744
DpnI GATC 4 cut(s) 66, 184, 275, 847
DpnII GATC 4 cut(s) 64, 182, 273, 845
DraIII CACNNNGTG 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 83, 633
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 83, 633
ErhI CCWWGG 2 cut(s) 83, 633
FaeI CATG 6 cut(s) 87, 351, 510, 686, 841, 852
FaqI GGGAC 3 cut(s) 392, 656, 766
FatI CATG 6 cut(s) 83, 347, 506, 682, 837, 848
FblI GTMKAC 1 cut(s) 249
FokI GGATG 5 cut(s) 57, 100, 309, 699, 761
FspBI CTAG 3 cut(s) 92, 477, 674
GsuI CTGGAG 2 cut(s) 167, 809
HaeIII GGCC 2 cut(s) 549, 827
Hin1II CATG 6 cut(s) 87, 351, 510, 686, 841, 852
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 1 cut(s) 170
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 250, 710
Hpy188I TCNGA 6 cut(s) 46, 182, 355, 456, 619, 745
Hpy188III TCNNGA 9 cut(s) 108, 124, 307, 488, 674, 683, 716, 788, 812
Hpy8I GTNNAC 2 cut(s) 250, 710
HpyAV CCTTC 2 cut(s) 382, 671
HpyCH4III ACNGT 3 cut(s) 319, 703, 757
HpyCH4V TGCA 7 cut(s) 70, 402, 439, 667, 773, 852, 860
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 5 cut(s) 43, 78, 168, 717, 744
Hsp92II CATG 6 cut(s) 87, 351, 510, 686, 841, 852
Kzo9I GATC 4 cut(s) 64, 182, 273, 845
LguI GCTCTTC 1 cut(s) 526
LmnI GCTCC 2 cut(s) 790, 907
LweI GCATC 3 cut(s) 78, 79, 426
MaeI CTAG 3 cut(s) 92, 477, 674
MaeIII GTNAC 5 cut(s) 135, 163, 171, 313, 694
MalI GATC 4 cut(s) 66, 184, 275, 847
MboI GATC 4 cut(s) 64, 182, 273, 845
MboII GAAGA 1 cut(s) 513
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 795
MluCI AATT 4 cut(s) 29, 532, 565, 732
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 98, 350
MnlI CCTC 4 cut(s) 52, 409, 493, 739
MseI TTAA 2 cut(s) 501, 608
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 4 cut(s) 404, 421, 775, 904
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 88
NcoI CCATGG 1 cut(s) 83
NdeII GATC 4 cut(s) 64, 182, 273, 845
NheI GCTAGC 1 cut(s) 91
NlaIII CATG 6 cut(s) 87, 351, 510, 686, 841, 852
NlaIV GGNNCC 2 cut(s) 496, 880
NmuCI GTSAC 4 cut(s) 135, 163, 171, 313
PagI TCATGA 1 cut(s) 682
PciSI GCTCTTC 1 cut(s) 526
PctI GAATGC 4 cut(s) 404, 421, 775, 904
PflMI CCANNNNNTGG 1 cut(s) 639
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PsiI TTATAA 2 cut(s) 218, 368
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 496, 880
PspPI GGNCC 1 cut(s) 825
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 1 cut(s) 711
RsaNI GTAC 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 526
SaqAI TTAA 2 cut(s) 501, 608
Sau3AI GATC 4 cut(s) 64, 182, 273, 845
Sau96I GGNCC 1 cut(s) 825
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 3 cut(s) 78, 79, 426
SfcI CTRYAG 1 cut(s) 885
Sse9I AATT 4 cut(s) 29, 532, 565, 732
SspMI CTAG 3 cut(s) 92, 477, 674
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 83, 633
TaaI ACNGT 3 cut(s) 319, 703, 757
TaqI TCGA 1 cut(s) 489
TasI AATT 4 cut(s) 29, 532, 565, 732
TatI WGTACW 1 cut(s) 709
Tru1I TTAA 2 cut(s) 501, 608
Tru9I TTAA 2 cut(s) 501, 608
TscAI CASTG 4 cut(s) 172, 215, 322, 634
TseFI GTSAC 4 cut(s) 135, 163, 171, 313
Tsp45I GTSAC 4 cut(s) 135, 163, 171, 313
TspDTI ATGAA 7 cut(s) 229, 300, 571, 663, 749, 854, 911
TspRI CASTG 4 cut(s) 172, 215, 322, 634
Van91I CCANNNNNTGG 1 cut(s) 639
XapI RAATTY 2 cut(s) 29, 532
XbaI TCTAGA 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 2 cut(s) 81, 784
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 3 cut(s) 92, 477, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.