Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015780

Physical Location & Seq

Genomic Coordinates Forward (+)

51444839 .. 51446152

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0402500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGAAAGATTGCTCCTGAGTTAATTCGTGACGAGATTCATGCTGGGAAGAGTGACAAGGAGATCTACAAGAAGCTTGAGGAGGATTTTGGGGAGACGGTACTTTATGCCCCAAAATTTGATCTGCAGACTGCAGGCTTATGGCTATCACCGCTTGTGGTTGCCGGTGCTGCTGCAGGTATTTGGGCTTATAAGAAGCACAGACAAAGGACTAATGTCCACGTCATGGCTTTGAACCTTATTAGAGGTGTTCCACTGACCCCAAATGAGAAGCAAACCATGTTAGACCTGCTCACACCACCACCTTCACGAGGAAATATACCTTTATCTTGGTGGAGGAGGTGGAGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

9.52

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	8 - 97	1.6e-14	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53840 AT3G14300
fragaria_vesca	FvH4_6g35820
malus_domestica	MD09G1172900.v1.1 MD17G1154400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147861
rosa_laevigata	RLG00000020286
rosa_multiflora	Rmu_sc0000308.1_g000054
rosa_roxburghii	Rroxscaffold_2G00099260
rosa_rugosa	Rorug02G0402500
rosa_samantha	Rh2AG459400 Rh2BG472800 Rh2CG446800 Rh2DG481700
rosa_wichuraiana	Rw2G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
Acc36I	ACCTGC	2 cut(s)	167, 297
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	226, 311
AgsI	TTSAA	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	170, 173
ApoI	RAATTY	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	141
BauI	CACGAG	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	157, 160
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	3 cut(s)	125, 132, 174
BfuAI	ACCTGC	2 cut(s)	167, 297
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	2 cut(s)	171, 174
BlsI	GCNGC	2 cut(s)	172, 175
BmgBI	CACGTC	1 cut(s)	223
BoxI	GACNNNNGTC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 311
Bse118I	RCCGGY	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	226, 311
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	95, 352
BseXI	GCAGC	2 cut(s)	157, 160
BseYI	CCCAGC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	226, 311
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	63, 121
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	10
BspMAI	CTGCAG	3 cut(s)	129, 136, 178
BspMI	ACCTGC	2 cut(s)	167, 297
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssMI	GATC	2 cut(s)	63, 121
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstKTI	GATC	2 cut(s)	66, 124
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	63, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 170
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSFI	CTRYAG	3 cut(s)	125, 132, 174
BstV1I	GCAGC	2 cut(s)	157, 160
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	254
BveI	ACCTGC	2 cut(s)	167, 297
Cac8I	GCNNGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	3 cut(s)	41, 226, 280
CviJI	RGCY	5 cut(s)	76, 138, 145, 188, 230
CviKI_1	RGCY	5 cut(s)	76, 138, 145, 188, 230
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	65, 123
DpnII	GATC	2 cut(s)	63, 121
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	3 cut(s)	44, 229, 283
FaiI	YATR	7 cut(s)	42, 108, 142, 192, 227, 281, 320
FatI	CATG	3 cut(s)	40, 225, 279
Fnu4HI	GCNGC	2 cut(s)	171, 174
Fsp4HI	GCNGC	2 cut(s)	171, 174
GluI	GCNGC	2 cut(s)	171, 174
GsaI	CCCAGC	1 cut(s)	48
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	3 cut(s)	44, 229, 283
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	3 cut(s)	17, 29, 309
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	127, 134, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 170
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	44, 229, 283
Kzo9I	GATC	2 cut(s)	63, 121
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	30, 30, 120, 162, 178, 302
Lsp1109I	GCAGC	2 cut(s)	157, 160
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	29, 53
MalI	GATC	2 cut(s)	65, 123
MboI	GATC	2 cut(s)	63, 121
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	2 cut(s)	24, 116
MnlI	CCTC	6 cut(s)	73, 76, 239, 305, 330, 333
MseI	TTAA	1 cut(s)	23
MspI	CCGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	151, 170
NdeII	GATC	2 cut(s)	63, 121
NlaIII	CATG	3 cut(s)	44, 229, 283
NmuCI	GTSAC	2 cut(s)	29, 53
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	172, 175
PshAI	GACNNNNGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	44
PstI	CTGCAG	3 cut(s)	129, 136, 178
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	171, 174
Sau3AI	GATC	2 cut(s)	63, 121
SetI	ASST	9 cut(s)	78, 181, 225, 240, 250, 291, 307, 325, 344
SfcI	CTRYAG	3 cut(s)	125, 132, 174
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	24, 116
SsiI	CCGC	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	225
TasI	AATT	2 cut(s)	24, 116
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	29, 53
TseI	GCWGC	2 cut(s)	170, 173
Tsp45I	GTSAC	2 cut(s)	29, 53
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.