Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009323

Physical Location & Seq

Genomic Coordinates Reverse (-)

53864183 .. 53864969

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0419700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAGGGCGGAACTAAGGTTGTGGTTGAGCCCTATAGACATGCTGGGGTTTTCCTTGCTAAGGGTAAAGAAGATGCTCTTGTGACCAAGAACATGGTGCCCGGAGAAGTTGTCTACAATGAGAAGAGGATTTCCGTTCAGCAAGAGGATGGAACAAAAGTTGAGTATAGAATTTGGAACCCTTTCCGTTCCAAGTTGGTAGCTGCTATTCTTGGTGGTGTTGATGAGATCTGGATTAAACCTGGTGCCAAGGTTCTCTACCTGGGGGCTGCTTCTGGTACCACAGTCTCTCATGTCTCCGACATTGTTGGCCCTACTGGATGTGTCTATGCAGTGGAGTTTTCTCATAGAAGTGGCAGAGACTTGATAAACATTTCTAAGAAGAGAACTAATGTCATACCAATTATTGAAGATGCTAGGCATCCAGCGAAATACCGTATGCTTGTTGGCATGGTTGACATGATATTTTCTGATGTTGCACAACCCGATCAGGCCAGGATTCTAGCTTTGAATGCATCATATTTTCTTAAAGCCGGAGGGCACTTCGTCATCTCTATCAAGGCTAATTGTATTTACTGCACTGTTCCTGCTGAGGCAGTGTTCCAATCTGAGGTGAAGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022607 GO:0031503 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048278 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C Vps51

Protein Analysis

208

Amino Acids

22.81

Weight (kDa)

9.28

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	12 - 208	4.5e-93	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49830 AT5G49830 AT5G49830
fragaria_vesca	FvH4_6g37400 FvH4_6g37400 FvH4_6g37400 FvH4_6g37400 FvH4_6g37400
malus_domestica	MD09G1158400.v1.1 MD17G1144400.v1.1
prunus_persica	Prupe.3G167600_v2.0.a1
pyrus_communis	pycom09g07700 pycom17g13750
rosa_chinensis	RchiOBHm_Chr2g0150201
rosa_laevigata	RLG00000020478
rosa_multiflora	Rmu_ssc0000020.1_g000009
rosa_roxburghii	Rroxscaffold_2G00097370
rosa_rugosa	Rorug02G0419700 Rorug02G0419800
rosa_samantha	Rh2BG491100 Rh2CG465200
rosa_wichuraiana	Rw2G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	3 cut(s)	97, 245, 278
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	171
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	61, 610
AgsI	TTSAA	2 cut(s)	410, 511
AjnI	CCWGG	3 cut(s)	241, 261, 494
AluBI	AGCT	3 cut(s)	203, 506, 622
AluI	AGCT	3 cut(s)	203, 506, 622
Alw26I	GTCTC	3 cut(s)	292, 301, 354
AoxI	GGCC	2 cut(s)	310, 492
ApeKI	GCWGC	2 cut(s)	203, 269
ApoI	RAATTY	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	182
Asp718I	GGTACC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	311
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	625
BaeGI	GKGCMC	2 cut(s)	102, 543
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BanI	GGYRCC	3 cut(s)	97, 245, 278
BanII	GRGCYC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	190, 256
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	3 cut(s)	243, 263, 496
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	292, 301, 354
BfaI	CTAG	2 cut(s)	417, 503
BfmI	CTRYAG	2 cut(s)	34, 623
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	2 cut(s)	204, 270
BlsI	GCNGC	2 cut(s)	205, 271
Bme1390I	CCNGG	4 cut(s)	102, 243, 263, 496
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	4 cut(s)	99, 179, 247, 280
BmrFI	CCNGG	4 cut(s)	102, 243, 263, 496
BmsI	GCATC	4 cut(s)	64, 403, 430, 524
Bpu10I	CCTNAGC	2 cut(s)	60, 591
BpuMI	CCSGG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	249, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 610
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	3 cut(s)	243, 263, 496
BseDI	CCNNGG	2 cut(s)	249, 262
BseGI	GGATG	3 cut(s)	154, 326, 421
BseLI	CCNNNNNNNGG	2 cut(s)	61, 610
BseMII	CTCAG	2 cut(s)	582, 600
BseNI	ACTGG	1 cut(s)	322
BseSI	GKGCMC	2 cut(s)	102, 543
BseXI	GCAGC	2 cut(s)	190, 256
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	562
BshFI	GGCC	2 cut(s)	312, 494
BshNI	GGYRCC	3 cut(s)	97, 245, 278
BsiSI	CCGG	2 cut(s)	102, 534
BslI	CCNNNNNNNGG	2 cut(s)	61, 610
BsmAI	GTCTC	3 cut(s)	292, 301, 354
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	312, 494
Bsp1286I	GDGCHC	3 cut(s)	33, 102, 543
Bsp143I	GATC	2 cut(s)	228, 487
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	312, 494
BspCNI	CTCAG	2 cut(s)	583, 601
BspLI	GGNNCC	4 cut(s)	99, 179, 247, 280
BspT107I	GGYRCC	3 cut(s)	97, 245, 278
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	249, 262
BssMI	GATC	2 cut(s)	228, 487
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	3 cut(s)	243, 263, 496
Bst4CI	ACNGT	3 cut(s)	286, 437, 583
Bst6I	CTCTTC	2 cut(s)	119, 377
BstDEI	CTNAG	5 cut(s)	15, 60, 378, 591, 609
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	154, 326, 421
BstKTI	GATC	2 cut(s)	231, 490
BstMAI	GTCTC	3 cut(s)	292, 301, 354
BstMBI	GATC	2 cut(s)	228, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	3 cut(s)	243, 263, 496
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	4 cut(s)	100, 241, 261, 494
BstSFI	CTRYAG	2 cut(s)	34, 623
BstSLI	GKGCMC	2 cut(s)	102, 543
BstV1I	GCAGC	2 cut(s)	190, 256
BstX2I	RGATCY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	312, 494
BtsCI	GGATG	3 cut(s)	154, 326, 421
BtsI	GCAGTG	2 cut(s)	339, 603
BtsIMutI	CAGTG	3 cut(s)	339, 579, 603
Cfr13I	GGNCC	1 cut(s)	311
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	5 cut(s)	41, 94, 293, 451, 460
CviJI	RGCY	9 cut(s)	31, 203, 269, 312, 494, 506, 533, 563, 622
CviKI_1	RGCY	9 cut(s)	31, 203, 269, 312, 494, 506, 533, 563, 622
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	5 cut(s)	15, 60, 378, 591, 609
DpnI	GATC	2 cut(s)	230, 489
DpnII	GATC	2 cut(s)	228, 487
Eam1104I	CTCTTC	2 cut(s)	119, 377
EarI	CTCTTC	2 cut(s)	119, 377
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	241, 261, 494
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	44, 97, 296, 454, 463
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	5 cut(s)	40, 93, 292, 450, 459
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	204, 270
FokI	GGATG	3 cut(s)	161, 333, 408
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	204, 270
FspBI	CTAG	2 cut(s)	417, 503
GluI	GCNGC	2 cut(s)	204, 270
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	312, 494
HapII	CCGG	2 cut(s)	102, 534
Hin1II	CATG	5 cut(s)	44, 97, 296, 454, 463
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	102, 534
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	115, 457
Hpy188I	TCNGA	3 cut(s)	301, 472, 610
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	115, 457
HpyCH4III	ACNGT	3 cut(s)	286, 437, 583
HpyCH4V	TGCA	4 cut(s)	332, 479, 515, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	5 cut(s)	15, 60, 378, 591, 609
Hsp92II	CATG	5 cut(s)	44, 97, 296, 454, 463
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	228, 487
Lsp1109I	GCAGC	2 cut(s)	190, 256
LweI	GCATC	4 cut(s)	64, 403, 430, 524
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	2 cut(s)	417, 503
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	230, 489
MboI	GATC	2 cut(s)	228, 487
MboII	GAAGA	4 cut(s)	83, 136, 394, 422
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	3 cut(s)	33, 102, 543
MluCI	AATT	3 cut(s)	171, 402, 565
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	5 cut(s)	120, 139, 530, 586, 604
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	2 cut(s)	237, 528
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	2 cut(s)	102, 534
MspR9I	CCNGG	4 cut(s)	102, 243, 263, 496
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	3 cut(s)	243, 263, 496
MwoI	GCNNNNNNNGC	1 cut(s)	512
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	228, 487
NlaIII	CATG	5 cut(s)	44, 97, 296, 454, 463
NlaIV	GGNNCC	4 cut(s)	99, 179, 247, 280
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	44
PctI	GAATGC	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	2 cut(s)	205, 271
Psp6I	CCWGG	3 cut(s)	241, 261, 494
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	3 cut(s)	241, 261, 494
PspN4I	GGNNCC	4 cut(s)	99, 179, 247, 280
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	237, 528
SatI	GCNGC	2 cut(s)	204, 270
Sau3AI	GATC	2 cut(s)	228, 487
Sau96I	GGNCC	1 cut(s)	311
ScrFI	CCNGG	4 cut(s)	102, 243, 263, 496
SduI	GDGCHC	3 cut(s)	33, 102, 543
SetI	ASST	8 cut(s)	21, 205, 244, 255, 264, 508, 615, 624
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	4 cut(s)	64, 403, 430, 524
SfcI	CTRYAG	2 cut(s)	34, 623
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	171, 402, 565
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	417, 503
StyD4I	CCNGG	4 cut(s)	100, 241, 261, 494
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	286, 437, 583
TasI	AATT	3 cut(s)	171, 402, 565
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	2 cut(s)	237, 528
Tru9I	TTAA	2 cut(s)	237, 528
TscAI	CASTG	3 cut(s)	339, 586, 603
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	203, 269
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	124, 176
TspRI	CASTG	3 cut(s)	339, 586, 603
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	2 cut(s)	417, 503
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.