Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009323

Physical Location & Seq

Genomic Coordinates Reverse (-)

53881308 .. 53884037

Gene Structure 2730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0419800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAACCAGACGTTGCTAGCGAATCACAGTACATTGCTCGACTTACTTGAAATTCCGCAGCTTATGGATACATGTGTGAGGAATGGAAATTATGATGAAGCTCTTGACTTAGAGACGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAAGTCAGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTTCAGAAACTTCGCTCAAACATTCAGTTACCTGAGTGTCTCCGCATTATTGGATATCTACGTAGAATAGGGGTATTTAGTAAGTATGAAATGCGTCTGCAGTTCCTGAGATGTCGGCAAGTATGGCTTACTGGAATTCTTGAGGATTTGGACAAGAGGAACGCTTATGAGTACCTGAAGGGGATGATTAACTTCCAAAGACAGCATCTATTTGATGTTGTCAATCAATACAGAGCAATATTTTCTGATGATACATCAGGCAATGAAGAAAATCATGATGGCGGTCTTCTGTTCAGTTGGTCTATGCATCAAATTACCTCACTCCTTAAGACTCTGAAGATTATGCTTCCAAAAATAACTGAAGGCGGATCACTGTCGAACATTTTGGATCAATCCATGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTCCGGGGACTGCTACCATCACTTTTTGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022607 GO:0031503 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048278 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C Vps51

Protein Analysis

228

Amino Acids

26.21

Weight (kDa)

5.97

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dor1	PF04124	1 - 228	1.9e-94	Dor1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49830 AT5G49830 AT5G49830
fragaria_vesca	FvH4_6g37400 FvH4_6g37400 FvH4_6g37400 FvH4_6g37400 FvH4_6g37400
malus_domestica	MD09G1158400.v1.1 MD17G1144400.v1.1
prunus_persica	Prupe.3G167600_v2.0.a1
pyrus_communis	pycom09g07700 pycom17g13750
rosa_chinensis	RchiOBHm_Chr2g0150201
rosa_laevigata	RLG00000020478
rosa_multiflora	Rmu_ssc0000020.1_g000009
rosa_roxburghii	Rroxscaffold_2G00097370
rosa_rugosa	Rorug02G0419700 Rorug02G0419800
rosa_samantha	Rh2BG491100 Rh2CG465200
rosa_wichuraiana	Rw2G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	56, 259, 498, 582
AclWI	GGATC	2 cut(s)	592, 612
AcsI	RAATTY	2 cut(s)	51, 351
AcuI	CTGAAG	4 cut(s)	203, 413, 572, 597
AfaI	GTAC	2 cut(s)	31, 389
AflII	CTTAAG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	50, 135, 680
AluBI	AGCT	5 cut(s)	61, 101, 130, 167, 214
AluI	AGCT	5 cut(s)	61, 101, 130, 167, 214
Alw26I	GTCTC	2 cut(s)	107, 260
AlwI	GGATC	2 cut(s)	592, 612
AlwNI	CAGNNNCTG	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	58, 173
ApoI	RAATTY	2 cut(s)	51, 351
AsuC2I	CCSGG	1 cut(s)	656
AsuNHI	GCTAGC	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	60, 93
BbsI	GAAGAC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	70, 160
BccI	CCATC	2 cut(s)	488, 676
BciVI	GTATCC	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	2 cut(s)	107, 260
BfaI	CTAG	2 cut(s)	17, 647
BfmI	CTRYAG	2 cut(s)	174, 314
BfrI	CTTAAG	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	59, 174
BlsI	GCNGC	2 cut(s)	60, 175
Bme1390I	CCNGG	1 cut(s)	656
BmrFI	CCNGG	1 cut(s)	656
BmsI	GCATC	2 cut(s)	430, 532
BmtI	GCTAGC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	656
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	32, 484
BseDI	CCNNGG	1 cut(s)	655
BseGI	GGATG	1 cut(s)	405
BseMI	GCAATG	2 cut(s)	32, 484
BseMII	CTCAG	3 cut(s)	224, 240, 314
BseNI	ACTGG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	70, 160
BsiSI	CCGG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	672
BsmAI	GTCTC	2 cut(s)	107, 260
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	672
Bsp143I	GATC	2 cut(s)	584, 604
BspACI	CCGC	4 cut(s)	56, 259, 498, 582
BspCNI	CTCAG	3 cut(s)	223, 241, 315
BspHI	TCATGA	1 cut(s)	490
BspMAI	CTGCAG	2 cut(s)	178, 318
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	592, 612
BspTI	CTTAAG	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	32, 484
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	655
BssMI	GATC	2 cut(s)	584, 604
Bst4CI	ACNGT	2 cut(s)	29, 591
Bst6I	CTCTTC	2 cut(s)	207, 675
BstAFI	CTTAAG	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	18, 128
BstDEI	CTNAG	4 cut(s)	109, 210, 249, 323
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	2 cut(s)	587, 607
BstMAI	GTCTC	2 cut(s)	107, 260
BstMBI	GATC	2 cut(s)	584, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 340
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	654
BstSFI	CTRYAG	2 cut(s)	174, 314
BstSNI	TACGTA	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	70, 160
BstV2I	GAAGAC	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	18, 128
CaiI	CAGNNNCTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	490
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	30, 388
CviAII	CATG	4 cut(s)	72, 139, 491, 613
CviJI	RGCY	9 cut(s)	61, 101, 130, 167, 173, 214, 343, 631, 646
CviKI_1	RGCY	9 cut(s)	61, 101, 130, 167, 173, 214, 343, 631, 646
CviQI	GTAC	2 cut(s)	30, 388
DdeI	CTNAG	4 cut(s)	109, 210, 249, 323
DpnI	GATC	2 cut(s)	586, 606
DpnII	GATC	2 cut(s)	584, 604
Eam1104I	CTCTTC	2 cut(s)	207, 675
EarI	CTCTTC	2 cut(s)	207, 675
EciI	GGCGGA	1 cut(s)	597
Eco105I	TACGTA	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	272
Eco57I	CTGAAG	4 cut(s)	203, 413, 572, 597
EcoRI	GAATTC	1 cut(s)	351
EcoRV	GATATC	1 cut(s)	272
EcoT22I	ATGCAT	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	4 cut(s)	75, 142, 494, 616
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	672
FatI	CATG	4 cut(s)	71, 138, 490, 612
Fnu4HI	GCNGC	2 cut(s)	59, 174
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	2 cut(s)	59, 174
FspBI	CTAG	2 cut(s)	17, 647
GluI	GCNGC	2 cut(s)	59, 174
HapII	CCGG	1 cut(s)	655
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	75, 142, 494, 616
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	22, 547
HpaII	CCGG	1 cut(s)	655
Hpy188I	TCNGA	3 cut(s)	222, 463, 552
Hpy188III	TCNNGA	4 cut(s)	104, 322, 356, 491
HpyAV	CCTTC	2 cut(s)	388, 572
HpyCH4III	ACNGT	2 cut(s)	29, 591
HpyCH4IV	ACGT	3 cut(s)	11, 116, 277
HpyCH4V	TGCA	5 cut(s)	126, 142, 176, 316, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 340
HpyF3I	CTNAG	4 cut(s)	109, 210, 249, 323
HpySE526I	ACGT	3 cut(s)	11, 116, 277
Hsp92II	CATG	4 cut(s)	75, 142, 494, 616
Kzo9I	GATC	2 cut(s)	584, 604
LpnPI	CCDG	9 cut(s)	20, 155, 169, 261, 333, 335, 404, 459, 668
Lsp1109I	GCAGC	2 cut(s)	70, 160
LweI	GCATC	2 cut(s)	430, 532
MaeI	CTAG	2 cut(s)	17, 647
MaeII	ACGT	3 cut(s)	11, 116, 277
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	2 cut(s)	586, 606
MboI	GATC	2 cut(s)	584, 604
MboII	GAAGA	5 cut(s)	194, 209, 494, 494, 565
MluCI	AATT	4 cut(s)	51, 88, 351, 528
MlyI	GAGTC	1 cut(s)	541
MnlI	CCTC	4 cut(s)	72, 352, 366, 544
Mph1103I	ATGCAT	1 cut(s)	525
MseI	TTAA	2 cut(s)	405, 543
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	655
MspR9I	CCNGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	173, 340
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	2 cut(s)	584, 604
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	75, 142, 494, 616
NsiI	ATGCAT	1 cut(s)	525
NspI	RCATGY	1 cut(s)	75
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	60, 175
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	1 cut(s)	71
PstI	CTGCAG	2 cut(s)	178, 318
PstNI	CAGNNNCTG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	31, 389
RsaNI	GTAC	2 cut(s)	30, 388
SaqAI	TTAA	2 cut(s)	405, 543
SatI	GCNGC	2 cut(s)	59, 174
Sau3AI	GATC	2 cut(s)	584, 604
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	656
SfaNI	GCATC	2 cut(s)	430, 532
SfcI	CTRYAG	2 cut(s)	174, 314
SmlI	CTYRAG	2 cut(s)	356, 542
SmoI	CTYRAG	2 cut(s)	356, 542
SnaBI	TACGTA	1 cut(s)	278
Sse9I	AATT	4 cut(s)	51, 88, 351, 528
SsiI	CCGC	4 cut(s)	56, 259, 498, 582
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	2 cut(s)	17, 647
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	2 cut(s)	29, 591
TaiI	ACGT	3 cut(s)	14, 119, 280
TaqI	TCGA	2 cut(s)	39, 593
TasI	AATT	4 cut(s)	51, 88, 351, 528
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	405, 543
Tru9I	TTAA	2 cut(s)	405, 543
TscAI	CASTG	1 cut(s)	594
TseI	GCWGC	2 cut(s)	58, 173
TspDTI	ATGAA	4 cut(s)	17, 111, 318, 495
TspRI	CASTG	1 cut(s)	594
Vha464I	CTTAAG	1 cut(s)	542
XapI	RAATTY	2 cut(s)	51, 351
XceI	RCATGY	1 cut(s)	75
XspI	CTAG	2 cut(s)	17, 647
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.