Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008876

Physical Location & Seq

Genomic Coordinates Reverse (-)

54837516 .. 54838494

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0427400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGATACCACAACATAAGTCAATTTATTTCTATTCTTGTTCCAGTTACTTGGCTCCAGAGTATGCAATGACTGGTCATCTTCTAGTAAAAAGTGATGTTTACAGCTATGGTGTAGTCCTTCTTGAACTCCTGACAGGACGAAAGCCGGTGGATCTGTCACAACCTTCAGGTCAAGAGAACCTTGTTGCTTGGGCTCGTCCTCTCCTCACCAGCAGAGAGGGTCTAGAATCAATAATAGACCCGGCGTTGAAATCTGATATGATCACATGGGACAGTGTAACCAAGGTAGCAGCAATTGCTTCAATGTGTATACAACCAGAAGTATCTCACCGCCCGTTCATGGGCGAGGTTGTTCAGGCCTTAAAGCTTGTATGCAATGAGTTCAGAGAAACAACAGAACTTGCAGGTTCAACAAGTTGTGGCCAAGACGATGATGATCTCTGCATTCATACAGATTGTGGTAATCTTGAAGCGGCAGAATCACAGCTTCAGATGCCTGTATTAGGGGCTAGCCATGACACTAAGATACCCTCAACGTCAGATTTGTTGAGTGCAAGTGTGGGATTTGAGGTTGAGGGGCAGGAAGTTGGATCTTTTAGGAGGTACTCTAGTTCAGGGCCTTTGAGGACTGGTAGGAGAAGGCAATTTTGGCAAGGACTAAGGAGTTTGTCTAGAGGAAGTATGAGTGAACATGGATCTTCATTGAAATTGTGGCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

241

Amino Acids

26.49

Weight (kDa)

5.53

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 119	2.8e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	16 - 121	2.1e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008876)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38300 FvH4_6g38300 FvH4_6g38300 FvH4_6g38300 FvH4_6g38300
malus_domestica	MD09G1151000.v1.1 MD17G1138600.v1.1
prunus_persica	Prupe.3G173800_v2.0.a1 Prupe.3G173800_v2.0.a1 Prupe.3G173800_v2.0.a1 Prupe.3G173800_v2.0.a1
pyrus_communis	pycom09g07080 pycom17g13170
rosa_chinensis	RchiOBHm_Chr2g0151631
rosa_laevigata	RLG00000020565
rosa_multiflora	Rmu_sc0005287.1_g000004
rosa_roxburghii	Rroxscaffold_2G00096300
rosa_rugosa	Rorug02G0427400
rosa_samantha	Rh2AG488300 Rh2BG500900 Rh2CG474800 Rh2DG512000
rosa_wichuraiana	Rw2G040030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	2 cut(s)	334, 476
AclWI	GGATC	3 cut(s)	162, 601, 706
AcoI	YGGCCR	2 cut(s)	424, 716
AcuI	CTGAAG	2 cut(s)	153, 476
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	3 cut(s)	343, 344, 506
AgsI	TTSAA	6 cut(s)	128, 253, 306, 414, 473, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	634, 666
AluBI	AGCT	3 cut(s)	108, 370, 490
AluI	AGCT	3 cut(s)	108, 370, 490
AlwI	GGATC	3 cut(s)	162, 601, 706
AoxI	GGCC	4 cut(s)	360, 424, 620, 716
ApeKI	GCWGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	620
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	202, 323
AsuNHI	GCTAGC	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	598, 631
BalI	TGGCCA	2 cut(s)	426, 718
BanII	GRGCYC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	5 cut(s)	86, 227, 513, 612, 675
BfuAI	ACCTGC	1 cut(s)	398
BisI	GCNGC	2 cut(s)	294, 477
BlsI	GCNGC	2 cut(s)	295, 478
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	486
BmtI	GCTAGC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 344, 506
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	45, 79, 637
Bse3DI	GCAATG	2 cut(s)	75, 385
Bse8I	GATNNNNATC	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	3 cut(s)	343, 344, 506
BseMI	GCAATG	2 cut(s)	75, 385
BseNI	ACTGG	3 cut(s)	45, 79, 637
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	4 cut(s)	362, 426, 622, 718
BsiSI	CCGG	2 cut(s)	149, 245
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	343, 344, 506
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	4 cut(s)	362, 426, 622, 718
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	154, 264, 439, 593, 698
BspACI	CCGC	2 cut(s)	334, 476
BspANI	GGCC	4 cut(s)	362, 426, 622, 718
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	398
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	3 cut(s)	162, 601, 706
BsrDI	GCAATG	2 cut(s)	75, 385
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	45, 79, 637
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	5 cut(s)	154, 264, 439, 593, 698
BssNAI	GTATAC	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	285
Bst1107I	GTATAC	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	2 cut(s)	525, 662
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstKTI	GATC	5 cut(s)	157, 267, 442, 596, 701
BstMBI	GATC	5 cut(s)	154, 264, 439, 593, 698
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 496, 652
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	3 cut(s)	154, 593, 698
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	3 cut(s)	154, 593, 698
BstZ17I	GTATAC	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	362, 426, 622, 718
BtsIMutI	CAGTG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	4 cut(s)	270, 343, 518, 695
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	2 cut(s)	525, 662
DpnI	GATC	5 cut(s)	156, 266, 441, 595, 700
DpnII	GATC	5 cut(s)	154, 264, 439, 593, 698
EaeI	YGGCCR	2 cut(s)	424, 716
Eco130I	CCWWGG	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	153, 476
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	273, 346, 521, 698
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	4 cut(s)	269, 342, 517, 694
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	294, 477
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	294, 477
FspBI	CTAG	5 cut(s)	86, 227, 513, 612, 675
GluI	GCNGC	2 cut(s)	294, 477
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	362, 426, 622, 718
HapII	CCGG	2 cut(s)	149, 245
Hin1II	CATG	4 cut(s)	273, 346, 521, 698
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	230, 482
HpaII	CCGG	2 cut(s)	149, 245
HphI	GGTGA	2 cut(s)	202, 323
Hpy166II	GTNNAC	3 cut(s)	103, 314, 692
Hpy188I	TCNGA	4 cut(s)	259, 389, 495, 544
Hpy188III	TCNNGA	7 cut(s)	59, 125, 133, 176, 227, 470, 675
Hpy8I	GTNNAC	3 cut(s)	103, 314, 692
HpyAV	CCTTC	3 cut(s)	131, 177, 636
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	5 cut(s)	68, 378, 407, 447, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 496, 652
HpyF3I	CTNAG	2 cut(s)	525, 662
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	4 cut(s)	273, 346, 521, 698
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	154, 264, 439, 593, 698
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	5 cut(s)	86, 227, 513, 612, 675
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	3 cut(s)	47, 159, 280
MalI	GATC	5 cut(s)	156, 266, 441, 595, 700
MboI	GATC	5 cut(s)	154, 264, 439, 593, 698
MboII	GAAGA	3 cut(s)	16, 74, 693
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	3 cut(s)	154, 593, 698
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	2 cut(s)	426, 718
MluCI	AATT	4 cut(s)	24, 297, 647, 710
MluNI	TGGCCA	2 cut(s)	426, 718
MmeI	TCCRAC	1 cut(s)	571
Mox20I	TGGCCA	2 cut(s)	426, 718
MscI	TGGCCA	2 cut(s)	426, 718
MseI	TTAA	1 cut(s)	365
Msp20I	TGGCCA	2 cut(s)	426, 718
MspI	CCGG	2 cut(s)	149, 245
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	299, 496, 652
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	5 cut(s)	154, 264, 439, 593, 698
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	4 cut(s)	273, 346, 521, 698
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	362
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	230, 482
PkrI	GCNGC	2 cut(s)	295, 478
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	620
PsuI	RGATCY	3 cut(s)	154, 593, 698
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	2 cut(s)	294, 477
Sau3AI	GATC	5 cut(s)	154, 264, 439, 593, 698
Sau96I	GGNCC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	486
Sse9I	AATT	4 cut(s)	24, 297, 647, 710
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	2 cut(s)	334, 476
SspMI	CTAG	5 cut(s)	86, 227, 513, 612, 675
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	542
TasI	AATT	4 cut(s)	24, 297, 647, 710
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	230, 482
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	4 cut(s)	17, 331, 440, 693
TspRI	CASTG	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	504
XbaI	TCTAGA	2 cut(s)	226, 674
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	5 cut(s)	86, 227, 513, 612, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.