Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017392

Physical Location & Seq

Genomic Coordinates Forward (+)

68931298 .. 68931882

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0564300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCGAATCTGACCTACCTGAAGATGTTATAGTCAATATCTTGTCTTGGCTGCCCGTCAAATCCTTGATCCGATTTACCTCCGTTTCAAAACGCTTCCGATCCATTATACTTTTCGACCCCAAATTCGCCAGATCTCAGTTTAAAGCAGCTTGTCAGCTGAAAACCCTAGGTCGCAGACTCCTCTTCTCCACCGACACCCCTCAACTCGAATCCCTAGACTTGGATGCTCCGTCGTTTGGAGACATTTCCTCTGTCAGAAAGCTAAGTTTCCCTCTCAAGGAACCGGCCTTTGATGTCAGGCTACTGGGCTCGTGCAATGGTTTGGTGTTTGTAGCGGTTGTAGTCTGTGATGATTTCAAGCTTTACATCTGGAACCCATTAATGGGATTCTTCAAGGAGTTGCCTCAGCCAGGTTTGTCTACCCTGCCGGTCTATTACGGTGTTGGCTATTTGTCTGCCACCGACGACTACAAACTTTTCGCAGGCTCTTATGGGAAAGAGATCGAGATGTTCTCCTTGAGAGCTCATGTTTGGAAAACAATCCAAAACCCTGGCTATAACAGAGGCAATATGTTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

194

Amino Acids

21.86

Weight (kDa)

8.73

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 38	8.1e-11	F-box domain
F-box-like	PF12937	4 - 37	2.5e-08	F-box-like
FBA_1	PF07734	88 - 184	6.1e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017392)

Species	Orthologous Gene IDs
malus_domestica	MD17G1029700.v1.1
pyrus_communis	pycom17g02670
rosa_chinensis	RchiOBHm_Chr2g0172991
rosa_laevigata	RLG00000022147
rosa_multiflora	Rmu_sc0012743.1_g000008 Rmu_sc0032348.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079370
rosa_rugosa	Rorug02G0564300
rosa_samantha	Rh2AG640900 Rh2BG654600 Rh2CG619900 Rh2DG667900
rosa_wichuraiana	Rw2G052900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	422
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	2 cut(s)	64, 96
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	42
AfiI	CCNNNNNNNGG	6 cut(s)	223, 239, 280, 385, 386, 413
AgsI	TTSAA	3 cut(s)	90, 361, 397
AjnI	CCWGG	2 cut(s)	412, 553
AluBI	AGCT	5 cut(s)	152, 160, 265, 364, 527
AluI	AGCT	5 cut(s)	152, 160, 265, 364, 527
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	64, 96
AoxI	GGCC	2 cut(s)	3, 288
ApeKI	GCWGC	2 cut(s)	52, 149
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AseI	ATTAAT	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	169
AvrII	CCTAGG	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	314, 529
BauI	CACGAG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	39, 161
BciT130I	CCWGG	2 cut(s)	414, 555
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	170, 218
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	2 cut(s)	53, 150
BlnI	CCTAGG	1 cut(s)	169
BlsI	GCNGC	2 cut(s)	54, 151
Bme1390I	CCNGG	2 cut(s)	414, 555
BmiI	GGNNCC	2 cut(s)	285, 377
BmrFI	CCNGG	2 cut(s)	414, 555
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	263, 541
BsaJI	CCNNGG	2 cut(s)	169, 553
Bsc4I	CCNNNNNNNGG	6 cut(s)	223, 239, 280, 385, 386, 413
Bse118I	RCCGGY	2 cut(s)	286, 430
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	414, 555
BseDI	CCNNGG	2 cut(s)	169, 553
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	6 cut(s)	223, 239, 280, 385, 386, 413
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	152, 422
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	39, 161
BshFI	GGCC	2 cut(s)	5, 290
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	2 cut(s)	287, 431
BslI	CCNNNNNNNGG	6 cut(s)	223, 239, 280, 385, 386, 413
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	5, 290
Bsp1286I	GDGCHC	2 cut(s)	314, 529
Bsp143I	GATC	4 cut(s)	69, 101, 134, 504
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	5, 290
BspCNI	CTCAG	2 cut(s)	151, 421
BspLI	GGNNCC	2 cut(s)	285, 377
BspPI	GGATC	2 cut(s)	64, 96
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	2 cut(s)	286, 430
BsrI	ACTGG	1 cut(s)	312
BssAI	RCCGGY	2 cut(s)	286, 430
BssECI	CCNNGG	2 cut(s)	169, 553
BssMI	GATC	4 cut(s)	69, 101, 134, 504
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	414, 555
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	3 cut(s)	138, 266, 408
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	4 cut(s)	72, 104, 137, 507
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	69, 101, 134, 504
BstNI	CCWGG	2 cut(s)	414, 555
BstSCI	CCNGG	2 cut(s)	412, 553
BstV1I	GCAGC	2 cut(s)	39, 161
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	5, 290
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	487
Cfr10I	RCCGGY	2 cut(s)	286, 430
CviAII	CATG	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	138, 266, 408
DpnI	GATC	4 cut(s)	71, 103, 136, 506
DpnII	GATC	4 cut(s)	69, 101, 134, 504
DraI	TTTAAA	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	314, 529
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	527
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	412, 553
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	314, 529
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	533
FaiI	YATR	6 cut(s)	32, 110, 495, 531, 561, 575
FatI	CATG	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	2 cut(s)	53, 150
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	2 cut(s)	314, 529
Fsp4HI	GCNGC	2 cut(s)	53, 150
FspBI	CTAG	2 cut(s)	170, 218
GluI	GCNGC	2 cut(s)	53, 150
HaeIII	GGCC	2 cut(s)	5, 290
HapII	CCGG	2 cut(s)	287, 431
Hin1II	CATG	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	8, 180, 212, 390
HpaII	CCGG	2 cut(s)	287, 431
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	4 cut(s)	13, 74, 101, 260
Hpy188III	TCNNGA	2 cut(s)	373, 508
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	2 cut(s)	238, 470
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	1 cut(s)	318
HpyF3I	CTNAG	3 cut(s)	138, 266, 408
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	4 cut(s)	69, 101, 134, 504
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	2 cut(s)	39, 161
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	170, 218
MalI	GATC	4 cut(s)	71, 103, 136, 506
MboI	GATC	4 cut(s)	69, 101, 134, 504
MboII	GAAGA	3 cut(s)	35, 178, 385
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	314, 529
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	91, 194, 213, 262, 285, 417, 560
MseI	TTAA	2 cut(s)	144, 383
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	2 cut(s)	287, 431
MspR9I	CCNGG	2 cut(s)	414, 555
MvaI	CCWGG	2 cut(s)	414, 555
NdeII	GATC	4 cut(s)	69, 101, 134, 504
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	285, 377
PfeI	GAWTC	3 cut(s)	8, 212, 390
PkrI	GCNGC	2 cut(s)	54, 151
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	2 cut(s)	412, 553
PspGI	CCWGG	2 cut(s)	412, 553
PspN4I	GGNNCC	2 cut(s)	285, 377
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	144, 383
SatI	GCNGC	2 cut(s)	53, 150
Sau3AI	GATC	4 cut(s)	69, 101, 134, 504
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	414, 555
SduI	GDGCHC	2 cut(s)	314, 529
SfaNI	GCATC	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	278, 520
SmoI	CTYRAG	2 cut(s)	278, 520
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	170, 218
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	412, 553
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	117, 210, 507
TasI	AATT	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	8, 212, 390
Tru1I	TTAA	2 cut(s)	144, 383
Tru9I	TTAA	2 cut(s)	144, 383
TseI	GCWGC	2 cut(s)	52, 149
TspGWI	ACGGA	2 cut(s)	73, 222
VspI	ATTAAT	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	125
XmaJI	CCTAGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	2 cut(s)	170, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.