Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010730

Physical Location & Seq

Genomic Coordinates Forward (+)

71973754 .. 71974017

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0600200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAGACGATTCTGGCCTCGAAGGTCATGGATATCCCGGATGGCGTCACCATCAAGGTGAAGGCCAAGGTCATCGAGGTCGAAGGTCCCTGTGGGAATCTCACCTTGACTTCGAGCTCGTCACCGATGACTCCACCGGCAAGAAGAAACTCAAGATCGAGGCCTGGTTCGGCACCAGCAAGACCAGTGCCCCCATCTGCACCTCCCTCAGCCACGTCAGCAACCTTATCACAGGCATCACCAAGGGCTACCGCTATGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

87

Amino Acids

8.94

Weight (kDa)

11.33

Isoelectric Point (pI)

71.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65580 AT1G65580
fragaria_vesca	FvH4_6g00030 FvH4_6g00030
malus_domestica	MD12G1260800.v1.1
prunus_persica	Prupe.6G365800_v2.0.a1 Prupe.6G365800_v2.0.a1 Prupe.6G365800_v2.0.a1
pyrus_communis	pycom12g24280
rosa_chinensis	RchiOBHm_Chr3g0447351
rosa_laevigata	RLG00000026007
rosa_multiflora	Rmu_ssc0000473.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425530
rosa_rugosa	Rorug02G0600200 Rorug02G0600300
rosa_samantha	Rh3AG000500 Rh3BG000300 Rh3CG000300 Rh3DG000500
rosa_wichuraiana	Rw3G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	119
AoxI	GGCC	3 cut(s)	15, 63, 161
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	5 cut(s)	40, 70, 94, 114, 231
AvaII	GGWCC	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	208
BccI	CCATC	3 cut(s)	35, 59, 202
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	38, 165
Bme18I	GGWCC	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	88, 174
BmrFI	CCNGG	2 cut(s)	38, 165
BmsI	GCATC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	66, 242
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	66, 242
BseGI	GGATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	17, 65, 163
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	38, 137
BslFI	GGGAC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	3 cut(s)	17, 65, 163
Bsp1286I	GDGCHC	2 cut(s)	119, 192
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	3 cut(s)	17, 65, 163
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	88, 174
BspT107I	GGYRCC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	66, 242
BssMI	GATC	1 cut(s)	155
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	2 cut(s)	66, 242
Bst2UI	CCWGG	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	36, 163
BstSLI	GKGCMC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	17, 65, 163
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	34
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	6 cut(s)	17, 65, 117, 163, 212, 248
CviKI_1	RGCY	6 cut(s)	17, 65, 117, 163, 212, 248
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	66, 242
Eco147I	AGGCCT	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	66, 242
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	2 cut(s)	66, 242
FaeI	CATG	1 cut(s)	31
FaiI	YATR	2 cut(s)	29, 257
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	27
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	17, 65, 163
HapII	CCGG	2 cut(s)	38, 137
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	3 cut(s)	10, 97, 130
HpaII	CCGG	2 cut(s)	38, 137
HphI	GGTGA	5 cut(s)	40, 70, 94, 114, 231
Hpy188III	TCNNGA	1 cut(s)	153
HpyAV	CCTTC	3 cut(s)	16, 55, 77
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	155
LpnPI	CCDG	8 cut(s)	51, 103, 150, 150, 177, 189, 198, 218
LweI	GCATC	1 cut(s)	245
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	46, 120
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	2 cut(s)	16, 156
MhlI	GDGCHC	2 cut(s)	119, 192
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	5 cut(s)	28, 70, 153, 213, 217
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	2 cut(s)	38, 137
MspR9I	CCNGG	2 cut(s)	38, 165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	88, 174
NmuCI	GTSAC	2 cut(s)	46, 120
PceI	AGGCCT	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	10, 97
PfoI	TCCNGGA	1 cut(s)	36
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	88, 174
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	38, 165
SduI	GDGCHC	2 cut(s)	119, 192
SfaNI	GCATC	1 cut(s)	245
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SseBI	AGGCCT	1 cut(s)	163
SsiI	CCGC	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	36, 163
StyI	CCWWGG	2 cut(s)	66, 242
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	5 cut(s)	20, 75, 81, 113, 158
TfiI	GAWTC	2 cut(s)	10, 97
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	2 cut(s)	46, 120
Tsp45I	GTSAC	2 cut(s)	46, 120
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.