Rorug02G0600300

Type II inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010730
Physical Location & Seq
Forward (+)
71976466 .. 71979535
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0600300.1

Sequence Viewer

Length: 960 bp
ATGGATGCTCGCTTCTTTCTCGCCCTCTCCCTCTGTTTCTTCTTCTTCTTCCCTCACGTCTCCCATTCCAGAGCTCGAATCTCAGACGTGATCCCCAAGAAGCAAACTGTGGGATCCCTGATCAGAATGAAGAGAGGTCCTTCTTCTGCTACATTCGATCCGTCTCGCGTCTCTCAGCTCTCATGGAGTCCCAGGGCTTTTATTTATAAGAATTTTCTCTCTGAGGAGGAGTGTGATCATCTAATTAATCTGGCCAAAGATAAGCTAGAGGTGTCGATGGTGGCTGACAATGAGTCTGGTAAGAGTATAAAGAGTGAAGTGCGGACGAGCTCCGGAATGTTCCTTTCGAAAGCTCAAGATGAAGTAGTTTCCAACATTGAGTCCAAGATTGCTGCATGGACCTTCCTTCCAGTTGAGAATGGGGAGGCAATGCAGATACTGCACTATGAAAATGGTCAAAAGTATGAGCCGCATTTCGATTATTTTCATGACAAAGCTAATCAAGAATTGGGTGGCCACCGTGTTGCCACTGTATTGATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACAGTCTTTCCTCATGCGCAGGTGAAAACGGTTGAAGCCAAGGATGAGGTCTTGTCTGATTGTGCTAAAAATGGCTATTCCGTGAAACCATTCAAGGGTGATGCCTTGCTGTTCTTCAGTCTTCTTCCTAATGCCACAACCGATCCAAACAGTTTGCATGGGAGCTGCCCTGTCATTGAGGGTGAGAAATGGTCCGCAACCAAGTGGATTCATGTGAGATCCTTCGAAAAGTCAATCAGGGAGGGAACTAGCGGGGAGTGCAAGGATGAGAATGCAAACTGCTTTACATGGGCTAAAGCCGGTGAATGTGAGAAGAATCCTGTATACATGGTGGGTTCAGAGGATCTTCCCGGGTTTTGTAGGAAGAGTTGCAAGGTCTGTTCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 map00562 map01100 map04070
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

319

Amino Acids

35.68

Weight (kDa)

6.38

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 142 - 261 2e-09 2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3 PF13640 144 - 261 8.1e-19 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010730)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65580 AT1G65580
fragaria_vesca FvH4_6g00030 FvH4_6g00030
malus_domestica MD12G1260800.v1.1
prunus_persica Prupe.6G365800_v2.0.a1 Prupe.6G365800_v2.0.a1 Prupe.6G365800_v2.0.a1
pyrus_communis pycom12g24280
rosa_chinensis RchiOBHm_Chr3g0447351
rosa_laevigata RLG00000026007
rosa_multiflora Rmu_ssc0000473.1_g000002
rosa_roxburghii Rroxscaffold_6G00425530
rosa_rugosa Rorug02G0600200 Rorug02G0600300
rosa_samantha Rh3AG000500 Rh3BG000300 Rh3CG000300 Rh3DG000500
rosa_wichuraiana Rw3G000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AarI CACCTGC 1 cut(s) 580
Acc16I TGCGCA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 580
AccI GTMKAC 1 cut(s) 894
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 4 cut(s) 322, 470, 765, 822
AclWI GGATC 7 cut(s) 85, 108, 121, 152, 707, 783, 921
AcoI YGGCCR 2 cut(s) 252, 514
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 670
AfiI CCNNNNNNNGG 1 cut(s) 665
AgsI TTSAA 3 cut(s) 557, 605, 664
AhdI GACNNNNNGTC 1 cut(s) 292
AjiI CACGTC 2 cut(s) 58, 88
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 7 cut(s) 74, 178, 265, 330, 353, 497, 735
AluI AGCT 7 cut(s) 74, 178, 265, 330, 353, 497, 735
Alw21I GWGCWC 2 cut(s) 76, 332
Alw26I GTCTC 3 cut(s) 64, 168, 175
AlwI GGATC 7 cut(s) 85, 108, 121, 152, 707, 783, 921
AlwNI CAGNNNCTG 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 920
Aor13HI TCCGGA 1 cut(s) 332
AoxI GGCC 2 cut(s) 252, 514
ApeKI GCWGC 2 cut(s) 392, 735
ApoI RAATTY 1 cut(s) 211
AseI ATTAAT 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 659
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 3 cut(s) 137, 399, 762
AsuC2I CCSGG 2 cut(s) 921, 922
AsuHPI GGTGA 4 cut(s) 604, 680, 764, 884
AsuII TTCGAA 2 cut(s) 347, 795
AvaI CYCGRG 1 cut(s) 920
AvaII GGWCC 3 cut(s) 137, 399, 762
BalI TGGCCA 2 cut(s) 254, 516
BamHI GGATCC 1 cut(s) 113
BanII GRGCYC 2 cut(s) 76, 332
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 76, 332
BbvI GCAGC 2 cut(s) 379, 722
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 2 cut(s) 120, 235
BcnI CCSGG 2 cut(s) 921, 922
BcoDI GTCTC 3 cut(s) 64, 168, 175
BfaI CTAG 2 cut(s) 266, 819
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 3 cut(s) 393, 470, 736
BlsI GCNGC 3 cut(s) 394, 471, 737
Bme1390I CCNGG 3 cut(s) 193, 921, 922
Bme18I GGWCC 3 cut(s) 137, 399, 762
BmeRI GACNNNNNGTC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 920
BmgBI CACGTC 2 cut(s) 58, 88
BmgT120I GGNCC 3 cut(s) 137, 399, 762
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 3 cut(s) 193, 921, 922
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 683
Bpu14I TTCGAA 2 cut(s) 347, 795
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 2 cut(s) 921, 922
BsaJI CCNNGG 4 cut(s) 191, 192, 609, 920
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse118I RCCGGY 1 cut(s) 869
Bse1I ACTGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 435
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 4 cut(s) 191, 192, 609, 920
BseGI GGATG 3 cut(s) 10, 619, 841
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 96, 188, 213
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 2 cut(s) 239, 242
BseXI GCAGC 2 cut(s) 379, 722
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 254, 516
BsiHKAI GWGCWC 2 cut(s) 76, 332
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 3 cut(s) 333, 870, 921
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 3 cut(s) 64, 168, 175
BsmBI CGTCTC 3 cut(s) 64, 168, 175
BsmFI GGGAC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 847
BsnI GGCC 2 cut(s) 254, 516
BsoBI CYCGRG 1 cut(s) 920
Bsp119I TTCGAA 2 cut(s) 347, 795
Bsp1286I GDGCHC 2 cut(s) 76, 332
Bsp13I TCCGGA 1 cut(s) 332
Bsp143I GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
BspACI CCGC 4 cut(s) 322, 470, 765, 822
BspANI GGCC 2 cut(s) 254, 516
BspCNI CTCAG 3 cut(s) 95, 187, 214
BspEI TCCGGA 1 cut(s) 332
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 7 cut(s) 85, 108, 121, 152, 707, 783, 921
BspT104I TTCGAA 2 cut(s) 347, 795
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 869
BsrI ACTGG 1 cut(s) 410
BssAI RCCGGY 1 cut(s) 869
BssECI CCNNGG 4 cut(s) 191, 192, 609, 920
BssMI GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
BssNAI GTATAC 1 cut(s) 895
BssT1I CCWWGG 1 cut(s) 609
Bst1107I GTATAC 1 cut(s) 895
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 6 cut(s) 109, 521, 532, 574, 601, 722
Bst6I CTCTTC 2 cut(s) 125, 929
BstAPI GCANNNNNTGC 1 cut(s) 439
BstBI TTCGAA 2 cut(s) 347, 795
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 4 cut(s) 82, 174, 222, 957
BstF5I GGATG 3 cut(s) 10, 619, 841
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 8 cut(s) 93, 116, 123, 160, 238, 715, 791, 916
BstMAI GTCTC 3 cut(s) 64, 168, 175
BstMBI GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
BstMWI GCNNNNNNNGC 2 cut(s) 439, 828
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 3 cut(s) 191, 919, 920
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 379, 722
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 3 cut(s) 113, 788, 913
BstYI RGATCY 3 cut(s) 113, 788, 913
BstZ17I GTATAC 1 cut(s) 895
BsuRI GGCC 2 cut(s) 254, 516
BtrI CACGTC 2 cut(s) 58, 88
BtsCI GGATG 3 cut(s) 10, 619, 841
BtsIMutI CAGTG 1 cut(s) 528
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 439
CciI TCATGA 1 cut(s) 487
CfoI GCGC 1 cut(s) 589
Cfr10I RCCGGY 1 cut(s) 869
Cfr13I GGNCC 3 cut(s) 137, 399, 762
Cfr9I CCCGGG 1 cut(s) 920
CseI GACGC 1 cut(s) 157
CviAII CATG 8 cut(s) 183, 396, 488, 584, 728, 782, 858, 898
DdeI CTNAG 4 cut(s) 82, 174, 222, 957
DpnI GATC 8 cut(s) 92, 115, 122, 159, 237, 714, 790, 915
DpnII GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
DriI GACNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 252, 514
Eam1104I CTCTTC 2 cut(s) 125, 929
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 2 cut(s) 125, 929
Ecl136II GAGCTC 2 cut(s) 74, 330
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 2 cut(s) 76, 332
Eco47I GGWCC 3 cut(s) 137, 399, 762
Eco53kI GAGCTC 2 cut(s) 74, 330
Eco57I CTGAAG 1 cut(s) 670
Eco88I CYCGRG 1 cut(s) 920
EcoICRI GAGCTC 2 cut(s) 74, 330
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 2 cut(s) 76, 332
ErhI CCWWGG 1 cut(s) 609
Esp3I CGTCTC 3 cut(s) 64, 168, 175
FaeI CATG 8 cut(s) 186, 399, 491, 587, 731, 785, 861, 901
FaqI GGGAC 1 cut(s) 174
FatI CATG 8 cut(s) 182, 395, 487, 583, 727, 781, 857, 897
FauI CCCGC 1 cut(s) 815
FbaI TGATCA 2 cut(s) 120, 235
FblI GTMKAC 1 cut(s) 894
Fnu4HI GCNGC 3 cut(s) 393, 470, 736
FokI GGATG 3 cut(s) 17, 626, 848
FriOI GRGCYC 2 cut(s) 76, 332
Fsp4HI GCNGC 3 cut(s) 393, 470, 736
FspBI CTAG 2 cut(s) 266, 819
FspI TGCGCA 1 cut(s) 588
GlaI GCGC 1 cut(s) 588
GluI GCNGC 3 cut(s) 393, 470, 736
HaeIII GGCC 2 cut(s) 254, 516
HapII CCGG 3 cut(s) 333, 870, 921
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 589
Hin1II CATG 8 cut(s) 186, 399, 491, 587, 731, 785, 861, 901
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HinfI GANTC 6 cut(s) 78, 187, 293, 380, 778, 886
HpaII CCGG 3 cut(s) 333, 870, 921
HphI GGTGA 4 cut(s) 604, 680, 764, 884
Hpy166II GTNNAC 1 cut(s) 895
Hpy188I TCNGA 5 cut(s) 85, 125, 223, 628, 910
Hpy188III TCNNGA 5 cut(s) 69, 333, 356, 488, 503
Hpy8I GTNNAC 1 cut(s) 895
HpyAV CCTTC 4 cut(s) 150, 412, 416, 802
HpyCH4III ACNGT 6 cut(s) 109, 521, 532, 574, 601, 722
HpyCH4IV ACGT 2 cut(s) 57, 87
HpyCH4V TGCA 7 cut(s) 395, 433, 442, 727, 831, 845, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 439, 828
HpyF3I CTNAG 4 cut(s) 82, 174, 222, 957
HpySE526I ACGT 2 cut(s) 57, 87
Hsp92II CATG 8 cut(s) 186, 399, 491, 587, 731, 785, 861, 901
HspAI GCGC 1 cut(s) 587
Kpn2I TCCGGA 1 cut(s) 332
Ksp22I TGATCA 2 cut(s) 120, 235
Kzo9I GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
LmnI GCTCC 2 cut(s) 335, 732
Lsp1109I GCAGC 2 cut(s) 379, 722
LweI GCATC 1 cut(s) 661
MaeI CTAG 2 cut(s) 266, 819
MaeII ACGT 2 cut(s) 57, 87
MalI GATC 8 cut(s) 92, 115, 122, 159, 237, 714, 790, 915
MboI GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
MflI RGATCY 3 cut(s) 113, 788, 913
MhlI GDGCHC 2 cut(s) 76, 332
MlsI TGGCCA 2 cut(s) 254, 516
MluCI AATT 3 cut(s) 211, 243, 506
MluNI TGGCCA 2 cut(s) 254, 516
MlyI GAGTC 3 cut(s) 196, 302, 389
MmeI TCCRAC 1 cut(s) 396
Mox20I TGGCCA 2 cut(s) 254, 516
MroI TCCGGA 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 659
MscI TGGCCA 2 cut(s) 254, 516
MseI TTAA 1 cut(s) 246
Msp20I TGGCCA 2 cut(s) 254, 516
MspI CCGG 3 cut(s) 333, 870, 921
MspR9I CCNGG 3 cut(s) 193, 921, 922
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 439, 828
NciI CCSGG 2 cut(s) 921, 922
NdeII GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
NlaIII CATG 8 cut(s) 186, 399, 491, 587, 731, 785, 861, 901
NlaIV GGNNCC 1 cut(s) 115
NsbI TGCGCA 1 cut(s) 588
NspV TTCGAA 2 cut(s) 347, 795
PagI TCATGA 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 580
PasI CCCWGGG 1 cut(s) 192
PctI GAATGC 1 cut(s) 847
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 3 cut(s) 78, 778, 886
PkrI GCNGC 3 cut(s) 394, 471, 737
PleI GAGTC 3 cut(s) 195, 301, 388
PpsI GAGTC 3 cut(s) 195, 301, 388
PpuMI RGGWCCY 1 cut(s) 137
PshBI ATTAAT 1 cut(s) 246
PsiI TTATAA 1 cut(s) 207
Psp124BI GAGCTC 2 cut(s) 76, 332
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 3 cut(s) 137, 399, 762
PspPPI RGGWCCY 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 439
PsuI RGATCY 3 cut(s) 113, 788, 913
SacI GAGCTC 2 cut(s) 76, 332
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 393, 470, 736
Sau3AI GATC 8 cut(s) 90, 113, 120, 157, 235, 712, 788, 913
Sau96I GGNCC 3 cut(s) 137, 399, 762
SchI GAGTC 3 cut(s) 196, 302, 389
ScrFI CCNGG 3 cut(s) 193, 921, 922
SduI GDGCHC 2 cut(s) 76, 332
SfaNI GCATC 1 cut(s) 661
SfuI TTCGAA 2 cut(s) 347, 795
SinI GGWCC 3 cut(s) 137, 399, 762
SmaI CCCGGG 1 cut(s) 922
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 3 cut(s) 211, 243, 506
SsiI CCGC 4 cut(s) 322, 470, 765, 822
SspMI CTAG 2 cut(s) 266, 819
SstI GAGCTC 2 cut(s) 76, 332
StyD4I CCNGG 3 cut(s) 191, 919, 920
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 6 cut(s) 109, 521, 532, 574, 601, 722
TaiI ACGT 2 cut(s) 60, 90
TaqI TCGA 6 cut(s) 76, 156, 275, 347, 477, 795
TasI AATT 3 cut(s) 211, 243, 506
TauI GCSGC 1 cut(s) 472
TfiI GAWTC 3 cut(s) 78, 778, 886
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 535
TseI GCWGC 2 cut(s) 392, 735
TspDTI ATGAA 6 cut(s) 143, 375, 462, 476, 770, 942
TspGWI ACGGA 2 cut(s) 150, 640
TspMI CCCGGG 1 cut(s) 920
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 137, 399, 762
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 1 cut(s) 211
XmaI CCCGGG 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 894
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 2 cut(s) 266, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.