Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007134

Physical Location & Seq

Genomic Coordinates Reverse (-)

464370 .. 467501

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0006600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGTTTTCGACCAATTGCATTCCTAGTGTTGCTACTCCTCTCCTCCACCGTTTCTGCTCAGGAGTCTGAGGTGCAAAGGCGAGAGTCCGGCGGATCCTTAGATCTGGGCCGGCGTAGCAAGATTAATTTGAATCTTCTCGAAGCTCTTGGAGAGAATGGCTCCGATTCAGTTGTTATTGGTCTCAATGTGGACTCCGGTCTTGGAATTTTCGATGCCTTTGTTGCAAGCTTTTCAATGATACTCGTTAGTGAGATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGCGCCACCCCAAGTCAATTGTCCTATCTGGTGCACTCTCTGCCCTGGTCGTAATGACGATACTTTCCACTGGACTTGGTAGGATTGTGCCAAATTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGTTCTTTATCTATTTTTCGGGCTGCGGTTGCTTTACATTGCTTGGAGATCTGATCCAAAAGGTTCACAGAAGAAAGAAATAGAAGAAGTAGAAGAGAAACTTGAGTCTGGACAGGGGAAGACAACTTTCCGCCGTTTCTTTTCTAGATTTTGTACACCAATCTTTTTGGAGTCATTCGTTCTAACATTTTTAGCTGAGTGGGGAGATCGTAGCCAAATAGCGACAATCGCTCTGGCAACCCACAAAAATGCAGTAGGAGTTGCTGTAGGTGCAACATTAGGACATACCATCTGCACGTCTGTGGCTGTGGTGGGAGGGAGCATGTTGGCATCCAAAATCTCCCAAAGGACGGTCGCTACCGTCGGAGGCTTGCTCTTCCTGTGCTTCTCTTTGTCCTCCTATTTTTATCCTCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

281

Amino Acids

30.25

Weight (kDa)

8.81

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	76 - 149	8.9e-19	Divalent cation/proton antiporter GDT1
GDT1	PF01169	199 - 271	6.7e-25	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05420 AT3G05420 AT5G27630 AT5G27630 AT5G27630 AT5G27630
fragaria_vesca	FvH4_6g06301 FvH4_6g06301 FvH4_6g06301
malus_domestica	MD04G1202500.v1.1 MD12G1216500.v1.1
prunus_persica	Prupe.6G322800_v2.0.a1 Prupe.6G322800_v2.0.a1
pyrus_communis	pycom04g17870 pycom12g20200
rosa_chinensis	RchiOBHm_Chr3g0455341
rosa_laevigata	RLG00000025368
rosa_multiflora	Rmu_sc0002169.1_g000045 Rmu_sc0024960.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424350
rosa_rugosa	Rorug03G0006600 Rorug03G0006700
rosa_samantha	Rh3CG066800 Rh3DG068300
rosa_wichuraiana	Rw3G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AciI	CCGC	3 cut(s)	93, 451, 556
AclWI	GGATC	3 cut(s)	90, 103, 473
AcsI	RAATTY	2 cut(s)	207, 388
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	2 cut(s)	133, 237
AjiI	CACGTC	1 cut(s)	723
AjnI	CCWGG	1 cut(s)	339
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	5 cut(s)	146, 231, 284, 422, 620
AluI	AGCT	5 cut(s)	146, 231, 284, 422, 620
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	188
Alw44I	GTGCAC	1 cut(s)	327
AlwI	GGATC	3 cut(s)	90, 103, 473
AoxI	GGCC	1 cut(s)	109
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	281, 419, 448
ApoI	RAATTY	2 cut(s)	207, 388
AseI	ATTAAT	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	293, 431, 435
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	1 cut(s)	543
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	26, 570
BfmI	CTRYAG	2 cut(s)	423, 690
BglII	AGATCT	2 cut(s)	103, 473
BisI	GCNGC	3 cut(s)	282, 420, 449
BlsI	GCNGC	3 cut(s)	283, 421, 450
Bme1390I	CCNGG	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	97, 163
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	205, 764
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	551
BplI	GAGNNNNNCTC	4 cut(s)	146, 178, 783, 815
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	2 cut(s)	300, 462
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	755
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	2 cut(s)	300, 462
BseMII	CTCAG	3 cut(s)	60, 74, 612
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	3 cut(s)	29, 34, 828
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	3 cut(s)	293, 431, 435
BsgI	GTGCAG	2 cut(s)	438, 703
Bsh1285I	CGRYCG	1 cut(s)	780
BshFI	GGCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	90, 112, 198
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	578
Bsp143I	GATC	5 cut(s)	95, 103, 473, 478, 631
BspACI	CCGC	3 cut(s)	93, 451, 556
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	61, 73, 613
BspLI	GGNNCC	2 cut(s)	97, 163
BspPI	GGATC	3 cut(s)	90, 103, 473
BspQI	GCTCTTC	1 cut(s)	806
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	2 cut(s)	300, 462
BsrFI	RCCGGY	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	5 cut(s)	95, 103, 473, 478, 631
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	4 cut(s)	52, 427, 778, 787
Bst6I	CTCTTC	2 cut(s)	513, 806
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	578
BstC8I	GCNNGC	3 cut(s)	113, 229, 797
BstDEI	CTNAG	4 cut(s)	60, 69, 100, 621
BstF5I	GGATG	1 cut(s)	755
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	5 cut(s)	98, 106, 476, 481, 634
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	5 cut(s)	95, 103, 473, 478, 631
BstMCI	CGRYCG	1 cut(s)	780
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 224, 290, 335, 454, 653, 695
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	751
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	2 cut(s)	423, 690
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	3 cut(s)	293, 431, 435
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	3 cut(s)	95, 103, 473
BstYI	RGATCY	3 cut(s)	95, 103, 473
BsuRI	GGCC	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	755
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	3 cut(s)	113, 229, 797
CfoI	GCGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	579
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	1 cut(s)	748
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	4 cut(s)	60, 69, 100, 621
DpnI	GATC	5 cut(s)	97, 105, 475, 480, 633
DpnII	GATC	5 cut(s)	95, 103, 473, 478, 631
Eam1104I	CTCTTC	2 cut(s)	513, 806
EarI	CTCTTC	2 cut(s)	513, 806
EciI	GGCGGA	2 cut(s)	108, 545
Eco31I	GGTCTC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	396
FaeI	CATG	1 cut(s)	751
FaiI	YATR	6 cut(s)	275, 290, 408, 711, 749, 844
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	1 cut(s)	747
Fnu4HI	GCNGC	3 cut(s)	282, 420, 449
FokI	GGATG	1 cut(s)	742
Fsp4HI	GCNGC	3 cut(s)	282, 420, 449
FspBI	CTAG	2 cut(s)	26, 570
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	3 cut(s)	282, 420, 449
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	3 cut(s)	90, 112, 198
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	751
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	7 cut(s)	65, 86, 133, 167, 194, 530, 596
HpaII	CCGG	3 cut(s)	90, 112, 198
Hpy166II	GTNNAC	4 cut(s)	193, 329, 491, 581
Hpy188I	TCNGA	4 cut(s)	70, 166, 478, 791
Hpy188III	TCNNGA	4 cut(s)	62, 140, 534, 570
Hpy8I	GTNNAC	4 cut(s)	193, 329, 491, 581
Hpy99I	CGWCG	1 cut(s)	791
HpyCH4III	ACNGT	4 cut(s)	52, 427, 778, 787
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	8 cut(s)	20, 76, 227, 329, 419, 677, 698, 720
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 224, 290, 335, 454, 653, 695
HpyF3I	CTNAG	4 cut(s)	60, 69, 100, 621
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	1 cut(s)	751
HspAI	GCGC	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
Kzo9I	GATC	5 cut(s)	95, 103, 473, 478, 631
LguI	GCTCTTC	1 cut(s)	806
LmnI	GCTCC	2 cut(s)	167, 744
Lsp1109I	GCAGC	3 cut(s)	293, 431, 435
LweI	GCATC	2 cut(s)	205, 764
MaeI	CTAG	2 cut(s)	26, 570
MaeII	ACGT	1 cut(s)	722
MalI	GATC	5 cut(s)	97, 105, 475, 480, 633
MboI	GATC	5 cut(s)	95, 103, 473, 478, 631
MboII	GAAGA	6 cut(s)	128, 508, 521, 530, 556, 793
MfeI	CAATTG	2 cut(s)	15, 312
MflI	RGATCY	3 cut(s)	95, 103, 473
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	5 cut(s)	15, 127, 207, 312, 388
MlyI	GAGTC	5 cut(s)	74, 95, 188, 539, 605
MmeI	TCCRAC	1 cut(s)	769
MnlI	CCTC	7 cut(s)	50, 55, 64, 734, 785, 832, 846
MroNI	GCCGGC	1 cut(s)	111
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	672, 725
MspI	CCGG	3 cut(s)	90, 112, 198
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	2 cut(s)	15, 312
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	7 cut(s)	117, 224, 290, 335, 454, 653, 695
NaeI	GCCGGC	1 cut(s)	113
NdeII	GATC	5 cut(s)	95, 103, 473, 478, 631
NgoMIV	GCCGGC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	751
NlaIV	GGNNCC	2 cut(s)	97, 163
NspI	RCATGY	1 cut(s)	751
OliI	CACNNNNGTG	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	806
PctI	GAATGC	1 cut(s)	20
PdiI	GCCGGC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	133, 167
PkrI	GCNGC	3 cut(s)	283, 421, 450
PleI	GAGTC	5 cut(s)	73, 94, 188, 538, 604
PpsI	GAGTC	5 cut(s)	73, 94, 188, 538, 604
PshAI	GACNNNNGTC	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	97, 163
PspPI	GGNCC	1 cut(s)	109
PsuI	RGATCY	3 cut(s)	95, 103, 473
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	2 cut(s)	672, 725
SapI	GCTCTTC	1 cut(s)	806
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	282, 420, 449
Sau3AI	GATC	5 cut(s)	95, 103, 473, 478, 631
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	5 cut(s)	74, 95, 188, 539, 605
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	9 cut(s)	75, 148, 233, 286, 424, 490, 622, 697, 725
SfaNI	GCATC	2 cut(s)	205, 764
SfcI	CTRYAG	2 cut(s)	423, 690
SmiMI	CAYNNNNRTG	2 cut(s)	672, 725
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	5 cut(s)	15, 127, 207, 312, 388
SsiI	CCGC	3 cut(s)	93, 451, 556
SspMI	CTAG	2 cut(s)	26, 570
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	4 cut(s)	52, 427, 778, 787
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	3 cut(s)	10, 141, 213
TasI	AATT	5 cut(s)	15, 127, 207, 312, 388
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	2 cut(s)	133, 167
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	3 cut(s)	281, 419, 448
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	2 cut(s)	207, 388
XbaI	TCTAGA	1 cut(s)	569
XceI	RCATGY	1 cut(s)	751
XspI	CTAG	2 cut(s)	26, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.