Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007134

Physical Location & Seq

Genomic Coordinates Forward (+)

4630447 .. 4636981

Gene Structure 6535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG068300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGGCTAGCATGGCTCGGGCGAGCTCGGGGCTCCAGTACCCTGAGCGGTTCTACGCGGCGGCCTCCTACGCCGGCTTCGACGGATCTCCTCGCTCCTCTTCTAAAGCCGTTCGCGCCAAATTCAACTCCGAGTCCGCTCTCATCCTCTACGCTCTCTACCAGCAGGCTACTGTAGGACCGTGTAACACACCAGAACCGAGTGCTTGGAATGCAGTTGAGAAAAGCAAATGGAGCAGCTGGAAGAAGCTTGCGGACATGGCCTCCACTGAAGCAATGCGTCTTTTTGTGAAGATATTGGAGGAAGAAGATCCAGGTTGGTATTCAAGAGCATCAAACTCTGTTTCTGAGCCTGTGGTAGATGTACAAATGAATCAAAATTCAAAAGTTGGGCCAGTTGTTGAGAATGGGAACTCTTATCCAGAGACAAAGACAATCTCTGCTGAAAATGGGAGCATACAGGAAGCACAGGATAAAGATGTTGTCTCTGAAGGCATTGGTTCTGTTGGTGTTTATGATCAGTGGATTGCACCTCCAGTATCTGGCCAACGTCCGAAAGCCCGATATGAGCATGGAGCAGCAGTTATACAAGACAAGATGTATATATATGGTGGAAACCACAATGGTCGTTACCTAAATGATCTCCATGTCTTCGATTTAAGGAGTTGGACTTGGTCAAAGATTGAGGCCAAAGTTGGGGCTGAATCACACAACTCGCCGTCTCCAGTAACAATAAGCCCATGTGCTGGTCATTCCTTGATACCATGGGGCAATAAACTTATCTCAATTGCTGGACATACAAAGGATCCTACTGAGTCTATTCAAGTAAAGGCATTCGATCTACACACTTCTACTTGGTCGTTCTTAAAGACTTATGGGAAACCACCGACATCACGCGGAGGTCAATCTGTCACCCTTATTGGAGGTAGCTTGGTGATTTTTGGTGGACAGGATGCGAAGAGAACTTTGTTAAATGATCTCCACATTCTTGACCTAGAAACAATGACATGGGATGAGATTGATGCTGTAGGGGTGTCCCCTTCTCCAAGGTCTGATCATGCTGCTGCTGTTCATGCTGACCGCTACCTCCTTATCTTTGGTGGGGGTTCCCATGCAACTTGCTTCAATGATCTGCATGTCCTTGATTTGCAAACTATGGAGTGGTCACGACCCACACAACAAGGCGAGATACCAACTCCACGGGCTGGACATGCAGGTGTGCCAGTTGGGGAAAATTGGTTCATTGTTGGTGGTGGTGACAATAAGAGTGGGGTATCAGAAACCGTTGTCCTAAACATGTCTACACTAGTTTGGTCTGTTGTAACTACTGTTGAAGGGCGTATTCCTGTTGCTAGTGAGGGATTAAGTTTGGTCGTAGGTTCTTACAATGGTGAAGATGTGCTTTTATCTTTTGGAGGATACAATGGGCGTTACAACAATGAGGTTAACGTTCTCAAACCAAGCCACAAGTCAAGCTTGCAATCAAAAATGGAAACTTCTGTCCCGGACAGTGTTTCTGCCGTGCATAATGCCACTACTGCTACCAGAGATGTGGAGTCCGAGTATGGAGCTGGACAAGAAGGAAAAATTAGGGAAATAGTTATGGACAACGTTGACACAGAGGCAATGAAATTCAGAGGCAAGAATTTCAATGAGCATCTTCTAGCAACACTCAAAGGAGATAAAGAGGAATTAGAATCATCACTCAGTAAGGAGAGGGCGCAATCTCTCCAATTAAAACAAGAGTTATCAGAAGCAGAGACTCGTAACACTGACCTATACAAGGAGCTTCAATCTGTACGGGGACAACTTGCATCCGAGCAGTCCAGATGCTTCAAACTTGAGGTTGAACTAGCAGAACTACGACAGAAGCTCCAAACAATGGAGGCATTGCAGAAGGAACTTGAACTCCTCCAGCGGCAAAAAGCTGCATCTGAACAAGCTGCTCTGAATGCTAAAAAGCAGGGCTCAGGAGGCGTCTGGGGCTGGCTTGCCGGAACACCTGGCAGTGAAAAATCTGATGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

675

Amino Acids

73.49

Weight (kDa)

5.52

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	17 - 98	9.5e-19	Acyl CoA binding protein
Kelch_HCF	PF13854	170 - 367	2.2e-21	Host cell factor, Kelch-repeats domain
Beta-prop_FBX42	PF13415	172 - 230	1.9e-12	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	172 - 302	4.5e-19	Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7	PF24681	173 - 230	8.2e-17	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_TYW4	PF13418	183 - 374	2.3e-06	tRNA wybutosine-synthesizing protein 4, beta-propeller
Kelch_1	PF01344	186 - 227	3.3e-10	Kelch motif
Beta-prop_FBX42	PF13415	245 - 369	1.9e-24	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	249 - 472	1.3e-56	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1	PF24981	262 - 370	5.7e-14	Attractin/LZTR1 beta-propeller
Beta-prop_ATRN-LZTR1	PF24981	311 - 490	5.1e-21	Attractin/LZTR1 beta-propeller
Beta-prop_FBX42	PF13415	352 - 503	1e-21	FBX42, beta-propeller domain
Kelch_HCF	PF13854	361 - 417	3.3e-07	Host cell factor, Kelch-repeats domain
Kelch_HCF	PF13854	393 - 488	9.7e-06	Host cell factor, Kelch-repeats domain
ACBP4_C	PF24922	551 - 654	3.8e-40	Acyl-CoA-binding domain-containing protein 4-6, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05420 AT3G05420 AT5G27630 AT5G27630 AT5G27630 AT5G27630
fragaria_vesca	FvH4_6g06301 FvH4_6g06301 FvH4_6g06301
malus_domestica	MD04G1202500.v1.1 MD12G1216500.v1.1
prunus_persica	Prupe.6G322800_v2.0.a1 Prupe.6G322800_v2.0.a1
pyrus_communis	pycom04g17870 pycom12g20200
rosa_chinensis	RchiOBHm_Chr3g0455341
rosa_laevigata	RLG00000025368
rosa_multiflora	Rmu_sc0002169.1_g000045 Rmu_sc0024960.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424350
rosa_rugosa	Rorug03G0006600 Rorug03G0006700
rosa_samantha	Rh3CG066800 Rh3DG068300
rosa_wichuraiana	Rw3G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1202
Acc36I	ACCTGC	1 cut(s)	1202
AccB7I	CCANNNNNTGG	4 cut(s)	539, 743, 1202, 1879
AccBSI	CCGCTC	2 cut(s)	46, 137
AccI	GTMKAC	1 cut(s)	1298
AccII	CGCG	3 cut(s)	56, 114, 894
AciI	CCGC	8 cut(s)	46, 56, 59, 135, 251, 894, 1078, 1915
AclI	AACGTT	2 cut(s)	1446, 1608
AclWI	GGATC	4 cut(s)	91, 302, 797, 810
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	4 cut(s)	119, 376, 1628, 1642
AcuI	CTGAAG	2 cut(s)	288, 507
AcyI	GRCGYC	1 cut(s)	1974
AfaI	GTAC	3 cut(s)	38, 363, 1797
AfiI	CCNNNNNNNGG	6 cut(s)	539, 693, 743, 1202, 1780, 1879
AflIII	ACRYGT	1 cut(s)	1293
AhlI	ACTAGT	1 cut(s)	1303
AjnI	CCWGG	2 cut(s)	310, 1999
AloI	GAACNNNNNNTCC	4 cut(s)	1220, 1252, 1890, 1922
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	4 cut(s)	416, 487, 723, 1751
AlwI	GGATC	4 cut(s)	91, 302, 797, 810
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	2 cut(s)	15, 25
AoxI	GGCC	5 cut(s)	60, 258, 389, 541, 684
ApeKI	GCWGC	6 cut(s)	234, 575, 1058, 1061, 1925, 1940
ApoI	RAATTY	4 cut(s)	119, 376, 1628, 1642
AspLEI	GCGC	2 cut(s)	116, 1720
AspS9I	GGNCC	2 cut(s)	176, 389
AsuC2I	CCSGG	1 cut(s)	1502
AsuHPI	GGTGA	4 cut(s)	901, 943, 1265, 1400
AsuNHI	GCTAGC	1 cut(s)	5
AvaI	CYCGRG	2 cut(s)	15, 25
AvaII	GGWCC	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	543
BamHI	GGATCC	1 cut(s)	802
BanII	GRGCYC	3 cut(s)	26, 33, 1967
BbsI	GAAGAC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	6 cut(s)	246, 587, 1045, 1048, 1912, 1927
BceAI	ACGGC	3 cut(s)	92, 700, 1502
BciT130I	CCWGG	2 cut(s)	312, 2001
BciVI	GTATCC	1 cut(s)	1409
BclI	TGATCA	2 cut(s)	514, 1051
BcnI	CCSGG	1 cut(s)	1502
BcoDI	GTCTC	4 cut(s)	416, 487, 723, 1751
BcuI	ACTAGT	1 cut(s)	1303
BfaI	CTAG	6 cut(s)	6, 992, 1304, 1350, 1661, 1850
BfmI	CTRYAG	2 cut(s)	171, 1023
BfuAI	ACCTGC	1 cut(s)	1202
BfuI	GTATCC	1 cut(s)	1409
BisI	GCNGC	9 cut(s)	57, 60, 235, 576, 1059, 1062, 1916, 1926, 1941
BlsI	GCNGC	9 cut(s)	58, 61, 236, 577, 1060, 1063, 1917, 1927, 1942
Bme1390I	CCNGG	3 cut(s)	312, 1502, 2001
Bme18I	GGWCC	1 cut(s)	176
BmeT110I	CYCGRG	2 cut(s)	15, 25
BmgT120I	GGNCC	2 cut(s)	176, 389
BmiI	GGNNCC	3 cut(s)	32, 804, 1105
BmrFI	CCNGG	3 cut(s)	312, 1502, 2001
BmsI	GCATC	8 cut(s)	338, 940, 1009, 1663, 1817, 1820, 1937, 2011
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	640
BpmI	CTGGAG	4 cut(s)	17, 516, 705, 1895
Bpu10I	CCTNAGC	2 cut(s)	42, 1966
BpuEI	CTTGAG	1 cut(s)	1859
BpuMI	CCSGG	1 cut(s)	1502
BsaHI	GRCGYC	1 cut(s)	1974
BsaJI	CCNNGG	3 cut(s)	761, 1043, 1196
Bsc4I	CCNNNNNNNGG	6 cut(s)	539, 693, 743, 1202, 1780, 1879
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	5 cut(s)	34, 392, 533, 722, 1220
Bse3DI	GCAATG	3 cut(s)	279, 1629, 1886
BseBI	CCWGG	2 cut(s)	312, 2001
BseDI	CCNNGG	3 cut(s)	761, 1043, 1196
BseGI	GGATG	4 cut(s)	141, 955, 1015, 1811
BseLI	CCNNNNNNNGG	6 cut(s)	539, 693, 743, 1202, 1780, 1879
BseMI	GCAATG	3 cut(s)	279, 1629, 1886
BseMII	CTCAG	5 cut(s)	33, 336, 801, 1717, 1980
BseNI	ACTGG	5 cut(s)	34, 392, 533, 722, 1220
BseRI	GAGGAG	3 cut(s)	78, 85, 1898
BseXI	GCAGC	6 cut(s)	246, 587, 1045, 1048, 1912, 1927
Bsh1236I	CGCG	3 cut(s)	56, 114, 894
BshFI	GGCC	5 cut(s)	62, 260, 391, 543, 686
BsiHKAI	GWGCWC	1 cut(s)	26
BsiHKCI	CYCGRG	2 cut(s)	15, 25
BsiSI	CCGG	3 cut(s)	72, 1502, 1992
BslFI	GGGAC	3 cut(s)	1018, 1484, 1815
BslI	CCNNNNNNNGG	6 cut(s)	539, 693, 743, 1202, 1780, 1879
BsmAI	GTCTC	4 cut(s)	416, 487, 723, 1751
BsmBI	CGTCTC	1 cut(s)	723
BsmFI	GGGAC	3 cut(s)	1018, 1484, 1815
BsmI	GAATGC	3 cut(s)	214, 830, 1954
BsnI	GGCC	5 cut(s)	62, 260, 391, 543, 686
BsoBI	CYCGRG	2 cut(s)	15, 25
Bsp1286I	GDGCHC	3 cut(s)	26, 33, 1967
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
Bsp19I	CCATGG	1 cut(s)	761
BspACI	CCGC	8 cut(s)	46, 56, 59, 135, 251, 894, 1078, 1915
BspANI	GGCC	5 cut(s)	62, 260, 391, 543, 686
BspCNI	CTCAG	5 cut(s)	34, 337, 802, 1716, 1979
BspFNI	CGCG	3 cut(s)	56, 114, 894
BspLI	GGNNCC	3 cut(s)	32, 804, 1105
BspMI	ACCTGC	1 cut(s)	1202
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	91, 302, 797, 810
BsrBI	CCGCTC	2 cut(s)	46, 137
BsrDI	GCAATG	3 cut(s)	279, 1629, 1886
BsrFI	RCCGGY	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	5 cut(s)	34, 392, 533, 722, 1220
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	761, 1043, 1196
BssMI	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
BssNI	GRCGYC	1 cut(s)	1974
BssT1I	CCWWGG	2 cut(s)	761, 1043
Bst2UI	CCWGG	2 cut(s)	312, 2001
Bst4CI	ACNGT	5 cut(s)	172, 180, 1282, 1327, 1508
Bst6I	CTCTTC	2 cut(s)	103, 950
BstACI	GRCGYC	1 cut(s)	1974
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	8 cut(s)	7, 22, 73, 165, 249, 1475, 1985, 1989
BstDEI	CTNAG	5 cut(s)	42, 345, 810, 1703, 1966
BstDSI	CCRYGG	2 cut(s)	761, 1196
BstENI	CCTNNNNNAGG	1 cut(s)	1778
BstF5I	GGATG	4 cut(s)	141, 955, 1015, 1811
BstFNI	CGCG	3 cut(s)	56, 114, 894
BstHHI	GCGC	2 cut(s)	116, 1720
BstKTI	GATC	9 cut(s)	86, 310, 517, 640, 805, 838, 976, 1054, 1129
BstMAI	GTCTC	4 cut(s)	416, 487, 723, 1751
BstMBI	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
BstNI	CCWGG	2 cut(s)	312, 2001
BstNSI	RCATGY	3 cut(s)	1136, 1211, 1297
BstSCI	CCNGG	3 cut(s)	310, 1500, 1999
BstSFI	CTRYAG	2 cut(s)	171, 1023
BstUI	CGCG	3 cut(s)	56, 114, 894
BstV1I	GCAGC	6 cut(s)	246, 587, 1045, 1048, 1912, 1927
BstV2I	GAAGAC	1 cut(s)	640
BstX2I	RGATCY	3 cut(s)	83, 307, 802
BstXI	CCANNNNNNTGG	1 cut(s)	1549
BstYI	RGATCY	3 cut(s)	83, 307, 802
BsuI	GTATCC	1 cut(s)	1409
BsuRI	GGCC	5 cut(s)	62, 260, 391, 543, 686
BtgI	CCRYGG	2 cut(s)	761, 1196
BtsCI	GGATG	4 cut(s)	141, 955, 1015, 1811
BtsI	GCAGTG	1 cut(s)	2011
BtsIMutI	CAGTG	5 cut(s)	264, 524, 1513, 1767, 2011
BveI	ACCTGC	1 cut(s)	1202
Cac8I	GCNNGC	8 cut(s)	7, 22, 73, 165, 249, 1475, 1985, 1989
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	116, 1720
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	176, 389
CseI	GACGC	2 cut(s)	266, 1963
Csp6I	GTAC	3 cut(s)	37, 362, 1796
CspCI	CAANNNNNGTGG	2 cut(s)	1246, 1281
CviQI	GTAC	3 cut(s)	37, 362, 1796
DdeI	CTNAG	5 cut(s)	42, 345, 810, 1703, 1966
DpnI	GATC	9 cut(s)	85, 309, 516, 639, 804, 837, 975, 1053, 1128
DpnII	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	2 cut(s)	103, 950
EarI	CTCTTC	2 cut(s)	103, 950
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	761, 1043
Eco24I	GRGCYC	3 cut(s)	26, 33, 1967
Eco47I	GGWCC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	288, 507
Eco88I	CYCGRG	2 cut(s)	15, 25
EcoICRI	GAGCTC	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	1778
EcoRII	CCWGG	2 cut(s)	310, 1999
EcoT14I	CCWWGG	2 cut(s)	761, 1043
EcoT38I	GRGCYC	3 cut(s)	26, 33, 1967
ErhI	CCWWGG	2 cut(s)	761, 1043
Esp3I	CGTCTC	1 cut(s)	723
FalI	AAGNNNNNCTT	4 cut(s)	1383, 1415, 1457, 1489
FaqI	GGGAC	3 cut(s)	1018, 1484, 1815
FbaI	TGATCA	2 cut(s)	514, 1051
FblI	GTMKAC	1 cut(s)	1298
Fnu4HI	GCNGC	9 cut(s)	57, 60, 235, 576, 1059, 1062, 1916, 1926, 1941
FokI	GGATG	4 cut(s)	128, 962, 1022, 1798
FriOI	GRGCYC	3 cut(s)	26, 33, 1967
Fsp4HI	GCNGC	9 cut(s)	57, 60, 235, 576, 1059, 1062, 1916, 1926, 1941
FspBI	CTAG	6 cut(s)	6, 992, 1304, 1350, 1661, 1850
GlaI	GCGC	2 cut(s)	115, 1719
GluI	GCNGC	9 cut(s)	57, 60, 235, 576, 1059, 1062, 1916, 1926, 1941
GsuI	CTGGAG	4 cut(s)	17, 516, 705, 1895
HaeIII	GGCC	5 cut(s)	62, 260, 391, 543, 686
HapII	CCGG	3 cut(s)	72, 1502, 1992
HgaI	GACGC	2 cut(s)	266, 1963
HhaI	GCGC	2 cut(s)	116, 1720
Hin1I	GRCGYC	1 cut(s)	1974
Hin6I	GCGC	2 cut(s)	114, 1718
HinP1I	GCGC	2 cut(s)	114, 1718
HincII	GTYRAC	2 cut(s)	1444, 1612
HindII	GTYRAC	2 cut(s)	1444, 1612
HindIII	AAGCTT	2 cut(s)	245, 1471
HinfI	GANTC	7 cut(s)	131, 370, 701, 812, 1553, 1694, 1759
HpaI	GTTAAC	1 cut(s)	1444
HpaII	CCGG	3 cut(s)	72, 1502, 1992
HphI	GGTGA	4 cut(s)	901, 943, 1265, 1400
Hpy166II	GTNNAC	4 cut(s)	944, 1299, 1444, 1612
Hpy188III	TCNNGA	6 cut(s)	324, 419, 986, 1164, 1824, 1968
Hpy8I	GTNNAC	4 cut(s)	944, 1299, 1444, 1612
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	5 cut(s)	482, 1047, 1325, 1571, 1888
HpyCH4III	ACNGT	5 cut(s)	172, 180, 1282, 1327, 1508
HpyCH4IV	ACGT	3 cut(s)	547, 1446, 1608
HpyF3I	CTNAG	5 cut(s)	42, 345, 810, 1703, 1966
HpySE526I	ACGT	3 cut(s)	547, 1446, 1608
Hsp92I	GRCGYC	1 cut(s)	1974
HspAI	GCGC	2 cut(s)	114, 1718
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Ksp22I	TGATCA	2 cut(s)	514, 1051
KspAI	GTTAAC	1 cut(s)	1444
Kzo9I	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
LmnI	GCTCC	8 cut(s)	36, 98, 231, 450, 572, 1565, 1783, 1875
Lsp1109I	GCAGC	6 cut(s)	246, 587, 1045, 1048, 1912, 1927
LweI	GCATC	8 cut(s)	338, 940, 1009, 1663, 1817, 1820, 1937, 2011
MaeI	CTAG	6 cut(s)	6, 992, 1304, 1350, 1661, 1850
MaeII	ACGT	3 cut(s)	547, 1446, 1608
MaeIII	GTNAC	9 cut(s)	182, 626, 724, 907, 1161, 1253, 1318, 1427, 1763
MalI	GATC	9 cut(s)	85, 309, 516, 639, 804, 837, 975, 1053, 1128
MbiI	CCGCTC	2 cut(s)	46, 137
MboI	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
MboII	GAAGA	9 cut(s)	90, 253, 301, 314, 317, 640, 967, 1403, 1649
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	3 cut(s)	83, 307, 802
MhlI	GDGCHC	3 cut(s)	26, 33, 1967
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	9 cut(s)	119, 376, 783, 1231, 1584, 1628, 1642, 1688, 1730
MluNI	TGGCCA	1 cut(s)	543
MlyI	GAGTC	4 cut(s)	140, 821, 1562, 1753
MmeI	TCCRAC	1 cut(s)	644
Mox20I	TGGCCA	1 cut(s)	543
MroNI	GCCGGC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	6 cut(s)	656, 863, 968, 1361, 1443, 1733
MslI	CAYNNNNRTG	1 cut(s)	1212
Msp20I	TGGCCA	1 cut(s)	543
MspA1I	CMGCKG	2 cut(s)	237, 1915
MspI	CCGG	3 cut(s)	72, 1502, 1992
MspR9I	CCNGG	3 cut(s)	312, 1502, 2001
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	3 cut(s)	214, 830, 1954
MvaI	CCWGG	2 cut(s)	312, 2001
MvnI	CGCG	3 cut(s)	56, 114, 894
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	1502
NcoI	CCATGG	1 cut(s)	761
NdeII	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
NgoMIV	GCCGGC	1 cut(s)	71
NheI	GCTAGC	1 cut(s)	5
NlaIV	GGNNCC	3 cut(s)	32, 804, 1105
NmuCI	GTSAC	3 cut(s)	907, 1161, 1253
NspI	RCATGY	3 cut(s)	1136, 1211, 1297
PaqCI	CACCTGC	1 cut(s)	1202
PciI	ACATGT	1 cut(s)	1293
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	3 cut(s)	214, 830, 1954
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	370, 701, 1694
PflFI	GACNNNGTC	1 cut(s)	670
PflMI	CCANNNNNTGG	4 cut(s)	539, 743, 1202, 1879
PfoI	TCCNGGA	1 cut(s)	1500
PkrI	GCNGC	9 cut(s)	58, 61, 236, 577, 1060, 1063, 1917, 1927, 1942
PleI	GAGTC	4 cut(s)	139, 820, 1561, 1753
PpsI	GAGTC	4 cut(s)	139, 820, 1561, 1753
PscI	ACATGT	1 cut(s)	1293
Psp124BI	GAGCTC	1 cut(s)	26
Psp1406I	AACGTT	2 cut(s)	1446, 1608
Psp6I	CCWGG	2 cut(s)	310, 1999
PspGI	CCWGG	2 cut(s)	310, 1999
PspN4I	GGNNCC	3 cut(s)	32, 804, 1105
PspPI	GGNCC	2 cut(s)	176, 389
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	3 cut(s)	83, 307, 802
PsyI	GACNNNGTC	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	3 cut(s)	38, 363, 1797
RsaNI	GTAC	3 cut(s)	37, 362, 1796
RseI	CAYNNNNRTG	1 cut(s)	1212
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	6 cut(s)	656, 863, 968, 1361, 1443, 1733
SatI	GCNGC	9 cut(s)	57, 60, 235, 576, 1059, 1062, 1916, 1926, 1941
Sau3AI	GATC	9 cut(s)	83, 307, 514, 637, 802, 835, 973, 1051, 1126
Sau96I	GGNCC	2 cut(s)	176, 389
SchI	GAGTC	4 cut(s)	140, 821, 1562, 1753
ScrFI	CCNGG	3 cut(s)	312, 1502, 2001
SduI	GDGCHC	3 cut(s)	26, 33, 1967
SfaNI	GCATC	8 cut(s)	338, 940, 1009, 1663, 1817, 1820, 1937, 2011
SfcI	CTRYAG	2 cut(s)	171, 1023
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	1212
SmlI	CTYRAG	1 cut(s)	1838
SmoI	CTYRAG	1 cut(s)	1838
SpeI	ACTAGT	1 cut(s)	1303
Sse9I	AATT	9 cut(s)	119, 376, 783, 1231, 1584, 1628, 1642, 1688, 1730
SsiI	CCGC	8 cut(s)	46, 56, 59, 135, 251, 894, 1078, 1915
SspMI	CTAG	6 cut(s)	6, 992, 1304, 1350, 1661, 1850
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	310, 1500, 1999
StyI	CCWWGG	2 cut(s)	761, 1043
TaaI	ACNGT	5 cut(s)	172, 180, 1282, 1327, 1508
TaiI	ACGT	3 cut(s)	550, 1449, 1611
TaqI	TCGA	3 cut(s)	78, 651, 834
TasI	AATT	9 cut(s)	119, 376, 783, 1231, 1584, 1628, 1642, 1688, 1730
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	3 cut(s)	59, 62, 1918
TfiI	GAWTC	3 cut(s)	370, 701, 1694
Tru1I	TTAA	6 cut(s)	656, 863, 968, 1361, 1443, 1733
Tru9I	TTAA	6 cut(s)	656, 863, 968, 1361, 1443, 1733
TscAI	CASTG	5 cut(s)	271, 524, 1513, 1774, 2011
TseFI	GTSAC	3 cut(s)	907, 1161, 1253
TseI	GCWGC	6 cut(s)	234, 575, 1058, 1061, 1925, 1940
Tsp45I	GTSAC	3 cut(s)	907, 1161, 1253
TspDTI	ATGAA	4 cut(s)	383, 1058, 1228, 1640
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	5 cut(s)	271, 524, 1513, 1774, 2011
Tth111I	GACNNNGTC	1 cut(s)	670
Van91I	CCANNNNNTGG	4 cut(s)	539, 743, 1202, 1879
VpaK11BI	GGWCC	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	1778
XapI	RAATTY	4 cut(s)	119, 376, 1628, 1642
XceI	RCATGY	3 cut(s)	1136, 1211, 1297
XmiI	GTMKAC	1 cut(s)	1298
XspI	CTAG	6 cut(s)	6, 992, 1304, 1350, 1661, 1850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.