Rorug03G0065900

Auxin transporter-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001953
Physical Location & Seq
Forward (+)
4870048 .. 4874980
4933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0065900.1

Sequence Viewer

Length: 1332 bp
ATGGAGATCAGTATGAGCGGCAACGCCCTGAAGACCTTCGCTCGCTCCATCACGTGCCTCGCACGTGTCGGAAACGAGCTCGCCATCCAAGCTTCCTCTTCTCAGCTGGCTTTTCACACTCTCAATGCGTCAAGGTCTGCTTATCAATCGATTACATTTAAGCCTGACTTTTTTGATGCCTACAATATTGCTGTTGACCTTGTGCAATGTAGTGTGCTTTTGAAGGCTGTTTGTGCTGTTCTTAGGACGCCTATAGGAAGCATAGATCATTTGAGCGTGAATTTGCCTGATCCCGATGCATCAAAAGTGCAATGGACTTTAGAATGCTACAGTGGTATGAGGAAATCCTACTGGATTATTTGCAATGTTGAACCCGACATACAACTTTTGGCACTTGATAGGACAAAATTCCCTAGCAGCCTAGTAGTGAGGCCTCGAGATCTCAACAGATTGCTTGCTAATTTTCAATCATCTCTTCAAGAGATCACTATTTTCGCAACAGAGCCTACTTCCTTACCTTCTGATGCAGCAAGTGAAATTGGAGGAAAGGCTGTTGAACTTAGAAGTTACATTGACCCAACCAAAGATAATGACTCATTACTGCATACTCAATTATGGATAGACCCTACAGAAGAGTTTGTGCAGTATACCCACACGGGAGACCCTGTAGATGTGACATTTGCCATGAAGGAGTTGAAGGCATTTCTTTCGTTCTGTGAAGGCTGTGAAGTTGAAATTCACTTGTACTTTGAGAAGTCTGGAGAGCCTATTCTGATGGCACCGAGATTCGGTCTTGATGATACGTCCACTTCAAATTTTGATGCTACACTGGTGCTTGCAACCATGCTAGCGTCACAGCAAGGAGCTGCTGAAGTGCACATTCAGGATGAGAATGGGATGGGCTCAGAAGCACAGCATCAAAGATTCCGAACAAATGTCCCTGAGCATTCATCTGATCAGACAAGAATGTGGTCTGATCTTACAGGAAGTGGTGCAAAAAATGGTAGTGGTGTGGAAATAGGACAGGTTCAAGGGGAAAGAGATTTGAATGCCAGTGCACAGAGAGATATTCAGAGGTTTAACACAATGCATATATCAAAGGCTGCGTCTGCTAGGGGAAATGAGCCTGTTGGTCTTAATATCTTCGACCCTGTTGAAAAGAATCATATAGAAGAGCAAGAGCCTCAAGATAGGTCAACAATCGTTGGTAATGGCTTTTCACAACGTCATCCGAGCAACTGGGTAGATGCAGATGAAGATGATAACGATGAGGATGGCGAGGAGGATGAAATGTGCATTCAGTCAACGCCACCATACTACGAAGAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001736 GO:0001738 GO:0002009 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007164 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009914 GO:0009926 GO:0009958 GO:0009986 GO:0009987 GO:0010011 GO:0010015 GO:0010053 GO:0010054 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010817 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022622 GO:0022857 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042562 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046942 GO:0046943 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048829 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0055085 GO:0060255 GO:0060429 GO:0060688 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071695 GO:0071702 GO:0071705 GO:0071944 GO:0080090 GO:0080161 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098656 GO:0099402 GO:1900618 GO:1902680 GO:1903506 GO:1903508 GO:1903825 GO:1905039 GO:1905392 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

443

Amino Acids

49.14

Weight (kDa)

4.6

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad9 PF04139 13 - 282 5e-74 Rad9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 778
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 647
AciI CCGC 1 cut(s) 18
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 4 cut(s) 280, 407, 735, 814
AcuI CTGAAG 2 cut(s) 50, 891
AcvI CACGTG 2 cut(s) 54, 65
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 1 cut(s) 788
AflIII ACRYGT 1 cut(s) 64
AluBI AGCT 4 cut(s) 79, 92, 106, 866
AluI AGCT 4 cut(s) 79, 92, 106, 866
Alw21I GWGCWC 3 cut(s) 81, 879, 1060
Alw26I GTCTC 1 cut(s) 654
Alw44I GTGCAC 2 cut(s) 875, 1056
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 1 cut(s) 431
ApaLI GTGCAC 2 cut(s) 875, 1056
ApeKI GCWGC 4 cut(s) 417, 527, 866, 1103
ApoI RAATTY 4 cut(s) 280, 407, 735, 814
ArsI GACNNNNNNTTYG 2 cut(s) 1091, 1123
Asp700I GAANNNNTTC 1 cut(s) 35
AsuNHI GCTAGC 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 435
BaeGI GKGCMC 2 cut(s) 879, 1060
BanI GGYRCC 1 cut(s) 778
BanII GRGCYC 2 cut(s) 81, 905
BbrPI CACGTG 2 cut(s) 54, 65
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 3 cut(s) 81, 879, 1060
BbvI GCAGC 4 cut(s) 429, 539, 853, 1090
BccI CCATC 5 cut(s) 56, 92, 769, 892, 1268
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BclI TGATCA 1 cut(s) 955
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 5 cut(s) 414, 422, 848, 1113, 1330
BfmI CTRYAG 4 cut(s) 252, 328, 627, 666
BglII AGATCT 1 cut(s) 439
BisI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
BlsI GCNGC 5 cut(s) 20, 419, 529, 868, 1105
BmeT110I CYCGRG 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 780
BmrI ACTGGG 1 cut(s) 1249
BmsI GCATC 7 cut(s) 166, 286, 308, 514, 811, 925, 1237
BmtI GCTAGC 1 cut(s) 851
BmuI ACTGGG 1 cut(s) 1249
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 780
Bpu10I CCTNAGC 1 cut(s) 942
BpuEI CTTGAG 1 cut(s) 1170
Bsa29I ATCGAT 1 cut(s) 149
BsaAI YACGTR 2 cut(s) 54, 65
BsaHI GRCGYC 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 654
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse1I ACTGG 4 cut(s) 356, 834, 1053, 1244
Bse3DI GCAATG 3 cut(s) 212, 317, 370
BseCI ATCGAT 1 cut(s) 149
BseGI GGATG 6 cut(s) 84, 892, 903, 1228, 1279, 1291
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMI GCAATG 3 cut(s) 212, 317, 370
BseMII CTCAG 3 cut(s) 116, 918, 933
BseNI ACTGG 4 cut(s) 356, 834, 1053, 1244
BseRI GAGGAG 1 cut(s) 1295
BseSI GKGCMC 2 cut(s) 879, 1060
BseXI GCAGC 4 cut(s) 429, 539, 853, 1090
BsgI GTGCAG 1 cut(s) 662
BshFI GGCC 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 149
BsiHKAI GWGCWC 3 cut(s) 81, 879, 1060
BsiHKCI CYCGRG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 923
BslI CCNNNNNNNGG 1 cut(s) 788
BsmAI GTCTC 1 cut(s) 654
BsmFI GGGAC 1 cut(s) 923
BsmI GAATGC 4 cut(s) 329, 946, 1054, 1296
BsnI GGCC 1 cut(s) 433
Bso31I GGTCTC 1 cut(s) 654
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 4 cut(s) 81, 879, 905, 1060
Bsp143I GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 3 cut(s) 115, 917, 934
BspDI ATCGAT 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 780
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 1167
BspT107I GGYRCC 1 cut(s) 778
BspTNI GGTCTC 1 cut(s) 654
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 3 cut(s) 212, 317, 370
BsrI ACTGG 4 cut(s) 356, 834, 1053, 1244
BssMI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
BssNAI GTATAC 1 cut(s) 648
BssNI GRCGYC 1 cut(s) 248
Bst1107I GTATAC 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 4 cut(s) 103, 480, 627, 1167
BstACI GRCGYC 1 cut(s) 248
BstBAI YACGTR 2 cut(s) 54, 65
BstC8I GCNNGC 6 cut(s) 43, 81, 108, 456, 837, 849
BstDEI CTNAG 5 cut(s) 102, 242, 560, 904, 942
BstF5I GGATG 6 cut(s) 84, 892, 903, 1228, 1279, 1291
BstKTI GATC 7 cut(s) 9, 268, 292, 442, 486, 958, 979
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
BstMWI GCNNNNNNNGC 3 cut(s) 89, 233, 1109
BstSFI CTRYAG 4 cut(s) 252, 328, 627, 666
BstSLI GKGCMC 2 cut(s) 879, 1060
BstV1I GCAGC 4 cut(s) 429, 539, 853, 1090
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BstZ17I GTATAC 1 cut(s) 648
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 1 cut(s) 433
BsuTUI ATCGAT 1 cut(s) 149
BtsCI GGATG 6 cut(s) 84, 892, 903, 1228, 1279, 1291
BtsIMutI CAGTG 3 cut(s) 337, 827, 1060
Cac8I GCNNGC 6 cut(s) 43, 81, 108, 456, 837, 849
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 4 cut(s) 117, 256, 840, 1095
Csp6I GTAC 1 cut(s) 745
CviAII CATG 2 cut(s) 685, 844
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 5 cut(s) 102, 242, 560, 904, 942
DpnI GATC 7 cut(s) 8, 267, 291, 441, 485, 957, 978
DpnII GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
Eam1104I CTCTTC 4 cut(s) 103, 480, 627, 1167
EarI CTCTTC 4 cut(s) 103, 480, 627, 1167
Ecl136II GAGCTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 433
Eco24I GRGCYC 2 cut(s) 81, 905
Eco31I GGTCTC 1 cut(s) 654
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 50, 891
Eco72I CACGTG 2 cut(s) 54, 65
Eco88I CYCGRG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 79
EcoT22I ATGCAT 2 cut(s) 301, 1092
EcoT38I GRGCYC 2 cut(s) 81, 905
FaeI CATG 2 cut(s) 688, 847
FalI AAGNNNNNCTT 4 cut(s) 124, 156, 152, 184
FaqI GGGAC 1 cut(s) 923
FatI CATG 2 cut(s) 684, 843
FbaI TGATCA 1 cut(s) 955
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
FokI GGATG 6 cut(s) 71, 899, 910, 1215, 1286, 1298
FriOI GRGCYC 2 cut(s) 81, 905
Fsp4HI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
FspBI CTAG 5 cut(s) 414, 422, 848, 1113, 1330
GluI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
GsuI CTGGAG 1 cut(s) 780
HaeIII GGCC 1 cut(s) 433
HgaI GACGC 4 cut(s) 117, 256, 840, 1095
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 2 cut(s) 688, 847
HincII GTYRAC 3 cut(s) 196, 1197, 1305
HindII GTYRAC 3 cut(s) 196, 1197, 1305
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 4 cut(s) 593, 786, 924, 1162
Hpy166II GTNNAC 7 cut(s) 196, 648, 807, 877, 1058, 1197, 1305
Hpy188III TCNNGA 7 cut(s) 293, 437, 479, 759, 794, 884, 1187
Hpy8I GTNNAC 7 cut(s) 196, 648, 807, 877, 1058, 1197, 1305
HpyAV CCTTC 6 cut(s) 46, 217, 528, 682, 691, 713
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 4 cut(s) 53, 64, 803, 1225
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 233, 1109
HpyF3I CTNAG 5 cut(s) 102, 242, 560, 904, 942
HpySE526I ACGT 4 cut(s) 53, 64, 803, 1225
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 2 cut(s) 688, 847
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
LguI GCTCTTC 1 cut(s) 1167
LmnI GCTCC 2 cut(s) 50, 863
Lsp1109I GCAGC 4 cut(s) 429, 539, 853, 1090
LweI GCATC 7 cut(s) 166, 286, 308, 514, 811, 925, 1237
MaeI CTAG 5 cut(s) 414, 422, 848, 1113, 1330
MaeII ACGT 4 cut(s) 53, 64, 803, 1225
MaeIII GTNAC 3 cut(s) 566, 673, 852
MalI GATC 7 cut(s) 8, 267, 291, 441, 485, 957, 978
MbiI CCGCTC 1 cut(s) 18
MboI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
MboII GAAGA 7 cut(s) 43, 90, 467, 644, 1135, 1184, 1268
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 4 cut(s) 81, 879, 905, 1060
MluCI AATT 7 cut(s) 280, 407, 460, 537, 611, 735, 814
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 49
Mph1103I ATGCAT 2 cut(s) 301, 1092
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 3 cut(s) 159, 1080, 1137
MspA1I CMGCKG 1 cut(s) 106
Mva1269I GAATGC 4 cut(s) 329, 946, 1054, 1296
MwoI GCNNNNNNNGC 3 cut(s) 89, 233, 1109
NdeII GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 2 cut(s) 688, 847
NlaIV GGNNCC 1 cut(s) 780
NmuCI GTSAC 2 cut(s) 673, 852
NsiI ATGCAT 2 cut(s) 301, 1092
PaeR7I CTCGAG 1 cut(s) 435
PceI AGGCCT 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 1167
PctI GAATGC 4 cut(s) 329, 946, 1054, 1296
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 786, 924, 1162
PkrI GCNGC 5 cut(s) 20, 419, 529, 868, 1105
PleI GAGTC 1 cut(s) 587
PmaCI CACGTG 2 cut(s) 54, 65
PmlI CACGTG 2 cut(s) 54, 65
PpsI GAGTC 1 cut(s) 587
Ppu21I YACGTR 2 cut(s) 54, 65
Psp124BI GAGCTC 1 cut(s) 81
PspCI CACGTG 2 cut(s) 54, 65
PspN4I GGNNCC 1 cut(s) 780
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
PsuI RGATCY 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 3 cut(s) 159, 1080, 1137
SatI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
Sau3AI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
SchI GAGTC 1 cut(s) 587
SduI GDGCHC 4 cut(s) 81, 879, 905, 1060
SfaNI GCATC 7 cut(s) 166, 286, 308, 514, 811, 925, 1237
SfcI CTRYAG 4 cut(s) 252, 328, 627, 666
Sfr274I CTCGAG 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 435, 1185
SmoI CTYRAG 2 cut(s) 435, 1185
Sse9I AATT 7 cut(s) 280, 407, 460, 537, 611, 735, 814
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 1 cut(s) 18
SspI AATATT 1 cut(s) 187
SspMI CTAG 5 cut(s) 414, 422, 848, 1113, 1330
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 433
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 4 cut(s) 56, 67, 806, 1228
TaqI TCGA 3 cut(s) 149, 436, 1146
TaqII GACCGA 1 cut(s) 779
TasI AATT 7 cut(s) 280, 407, 460, 537, 611, 735, 814
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 3 cut(s) 786, 924, 1162
Tru1I TTAA 3 cut(s) 159, 1080, 1137
Tru9I TTAA 3 cut(s) 159, 1080, 1137
TscAI CASTG 3 cut(s) 337, 834, 1060
TseFI GTSAC 2 cut(s) 673, 852
TseI GCWGC 4 cut(s) 417, 527, 866, 1103
Tsp45I GTSAC 2 cut(s) 673, 852
TspDTI ATGAA 4 cut(s) 701, 939, 1269, 1302
TspRI CASTG 3 cut(s) 337, 834, 1060
VneI GTGCAC 2 cut(s) 875, 1056
XapI RAATTY 4 cut(s) 280, 407, 735, 814
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 5 cut(s) 414, 422, 848, 1113, 1330
Zsp2I ATGCAT 2 cut(s) 301, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.