Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001586

Physical Location & Seq

Genomic Coordinates Reverse (-)

46918150 .. 46924524

Gene Structure 6375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0352100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2910 bp

ATGAAACTAATCTTGTCTCCCAGTTCTGAGAGATCCCATCTGGTACAGAACTTTAATGTGCTGCAGTTAGCAATTTCTGCCGAAGATACACACATGAAGAAGCTCTTCTTTTTCAGATCTTCTGCTTCTAGCAATGGAAACAACAAATCCCCTCCATCAACTGACAAGCAAGTATACTGGGAAAACCCATCAGAAAATGGAAGTCAAGTTGGTGACATTGCTGATAATAGGTTTCAAAGCCCTAAAGGATTCTTTTCTAAATCTCGAAAGCAGGTCTCTGATATCAAGAATTCCAGTGAGAGTCCAGGCCTTAGAAGGAGCCGGTCATTATCATCAGCAGCCTTCCTTGTAAGTGAGCCGGTGCAAGCAGAATTTTCTTCTTCGAGATATCAGAGTAGATCTCCTTGTAGTAGTACAAGTAGTATTCCTCATCGACAATGTGGCCAATCATCTTGTTGTCGGACTTTTACCCCTGAGAGGCATCAGGCTAAAGAGTTAGAAGTTCCAGCTGTTCAAAACACACACGGATTAGAACGACCTGGTTCTGCTGGTTCTCCTAGAATACAGCATGGTTCGTCCGGGAGCTCTTCTACTTGCTCTAGTAATGTCTCATCCAAAGTTTTGGACCGCTATATAGACGGAGAGCAGGAGGAAAGGGGCAGACAAGAGAACAATTCTTCCCATAGAAACTTCAATGGGATTGGAAACGGTGGTGGATGGCGCCCTCCGCGAGTTCAGATTACAGCCCCCAGTTCACCCAGGGCTCATTCATTTAGAGAGGCCAAAAGTTCTCGTTATCGTCTATCATCCAAAGATTGGGTTGAAAATGGATTTGGGCATGAATCTCCCAGGAGACTTGCAAAGAATGTTGTGGAGAGGCTCTCACAGTCTCATGTCATGCAGCCATCACATGCAAAGGAATTTGACCATGACATCCCACTCACCATTGAGGATATATATGGTAGACCGGACCTGGTAAGCCAGAAAACTTACCCTTTGGACGAACCTTATGACATAATTAGTAAGTATCATGGGGATGATTACTCGAGCTTGCAGAAACAGTTCTATGGAGAGAAGTGTAATGGTTTAAACTCTGATGAGACTGGAGAGGACCTGGATGTGGAATTACAAAGAAGACTGGAGGAAGCTGAGGAGAAGGTCATGCTTCTGTCTGAAGAACTTGAGCAGGAAAGCTTTCTTAGAGATAGTGGGTACAATGTGCCATCACTGATTCAGACAATTAGAAACCTAACAGAGCAGAGAATCAGCTTTGCACTTGAGGTTTCAAACCTCCTTCAATTACGAATTGCTGAGAGGGCCTCTGCCAAGAAAGAATTGAGACTGGCAAACGCAGAACTTGAGTCTCGAACCAGAAGACTAGAGAAGGAGAAGAATGAGTTACAGTCAGCATTGGAGACAGAACTAGATCGAAGGTCAACTGACTGGTCACTCAAGCTGGACAAATATCAGTCGGAAGAGCAGAGGCTTCGTGAACGAGTTAGAGAGCTTGCAGAGCAAAATGTCTCACTTCAGAGAGAAGTTTCTTCTTTTAATGTGAGGGAAACTGAGAGTAGAAGTTTCATAACAAATGCAGAGCAACAGCTTAAGGGGCTCACTACTAGGATGGAGGAAATGAGAGAGGTGAATCAAGGCCTACAAGAAAATCTCTCGGAATTGCAAGAGAAGTACAGAGCATCAGAGGAAGATCGTGTTTGTCTCCGTAAGAATTTTGAAGAGAGGGATAAGGAGTGCAAGGATTTGCATAAATCCATTACAAGATTATTAAGAACCTGCAGAGAACAAGAGAAGACAATTGATGGGTTGCGTGAAGGTTTTAGTGAGGAGTTCGGGAAAAATCAATCATCGGAGAGGTTTGATAAGCATGTTTCGAAATTGCAGATGGAGCAAATGAGGTTGACAGGAGTAGAACTGGGTTTAAGGAGAGAGTTGGACTCTCAAAGGCTTGAAGTTGATTCTCTTAGGCATGAGAATATACACTTGTTAGACCGTTTGAGGGGCAATGGGAAAGACAGTGGTGCTTTAACTTTCAAGCTAGATAAGGAGATGTGGGCGCGGGTCGGCTGCTTGCAAAATAAAGGGCTATCACTCCTAAATGAGAGCTCCCAGTTGTGTTCAGATTTTCTGGAATTTGTCAAAAGAAAAGCAGGCCATCTCCAAGAAGTCAAGCAGGGTTTGGATGCACAATTTTTTGTTGAATCTGAAATGAAAGTGCAGGGGTTAAAGCGTGGAACTGAAAGCTTAACCAGAAGTTTGCAGACAATGTCTGCTTTGTTCCATGAAAAGTCCAGTCTGGCCGCATCAAAATATCAATCTAAGTGCATGGATGCTGACGAATCAGGACATTCAAATGATCAAATCCCAGAGGACGATATGAGATATAAGCTTCAATCAGAAACTATACTTGCAAGTTTACTAAGAGAGAAGATACATTCTAAAGAGCTGGAAGTTGAGCAGTTGCAAGCTGAACTAGCTGCAGCTGTAAGAGGAAATGACATCCTTAGATGTGAAGTTCAAAATGCAATGGACAACCTTTCCTGTCTCACCCACAAGTTGAAAGACGTTGAACTACTGATGCTCAAGAAGGATGATAACATAAACAAGCTTCAAAGTGACCTCCAAGAATCTACAAAGGAATTAACAGTTACACGAGGGATACTGCCTAAAATTTCAGAAGAGAGAGATATGATGTGGGAGGAGGTGAAAAAGTACAATGAGAAGAATATGCTGTTGAACTCGGAGGTTAATCTGTTGAAGAAGAAGATAGAGACCCTTGATGAGGAAGTACTCTTCAAAGAAGGCCAGATTACAATCCTGAAAGATACATTAGGGAACAAACCGTTTGATCTTCTAGCGAGTCCTGATAATACACGAGAATTTCTGGTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

969

Amino Acids

110.9

Weight (kDa)

6.06

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7653	PF24670	646 - 769	5.4e-54	Domain of unknown function (DUF7653)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT2G40020 AT2G40020 AT2G40020 AT2G40020
fragaria_vesca	FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_7g23100 FvH4_7g24210 FvH4_7g24210
malus_domestica	MD01G1149600.v1.1 MD17G1067400.v1.1
prunus_persica	Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1
pyrus_communis	pycom01g16760 pycom07g19830 pycom17g06770
rosa_chinensis	RchiOBHm_Chr1g0369781 RchiOBHm_Chr6g0274431
rosa_laevigata	RLG00000013543 RLG00000027106
rosa_multiflora	Rmu_sc0001154.1_g000041 Rmu_sc0001289.1_g000015 Rmu_sc0007743.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287390 Rroxscaffold_7G00194230
rosa_rugosa	Rorug01G0352100 Rorug01G0352200 Rorug01G0352300 Rorug06G0081800
rosa_samantha	Rh1AG360800 Rh1BG324500 Rh1CG337700 Rh1DG354900 Rh6AG198200 Rh6BG201500 Rh6CG202200 Rh6DG192700
rosa_wichuraiana	Rw1G031760 Rw6G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	262, 1799
AccB1I	GGYRCC	1 cut(s)	720
AccB7I	CCANNNNNTGG	1 cut(s)	816
AccI	GTMKAC	2 cut(s)	174, 964
AccII	CGCG	2 cut(s)	730, 2074
AciI	CCGC	4 cut(s)	628, 728, 2074, 2316
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	442, 2313
AcsI	RAATTY	7 cut(s)	289, 371, 920, 1726, 2147, 2685, 2894
AcuI	CTGAAG	2 cut(s)	1194, 1514
AcyI	GRCGYC	1 cut(s)	721
AfaI	GTAC	6 cut(s)	45, 415, 1214, 1688, 2729, 2805
AfiI	CCNNNNNNNGG	5 cut(s)	477, 816, 1120, 2014, 2797
AflII	CTTAAG	1 cut(s)	1604
AjnI	CCWGG	6 cut(s)	304, 538, 758, 848, 972, 1113
AjuI	GAANNNNNNNTTGG	2 cut(s)	816, 848
AloI	GAACNNNNNNTCC	2 cut(s)	662, 694
Alw21I	GWGCWC	2 cut(s)	587, 2123
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	1045
AoxI	GGCC	8 cut(s)	307, 442, 780, 1317, 1651, 2167, 2313, 2818
ApeKI	GCWGC	6 cut(s)	61, 338, 901, 2082, 2492, 2495
ApoI	RAATTY	7 cut(s)	289, 371, 920, 1726, 2147, 2685, 2894
Asp700I	GAANNNNTTC	3 cut(s)	104, 1061, 1194
AspLEI	GCGC	2 cut(s)	723, 2074
AspS9I	GGNCC	4 cut(s)	625, 970, 1111, 1317
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	6 cut(s)	224, 747, 934, 1654, 2554, 2731
AsuII	TTCGAA	1 cut(s)	1889
AvaI	CYCGRG	1 cut(s)	1045
AvaII	GGWCC	3 cut(s)	625, 970, 1111
BalI	TGGCCA	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	720
BanII	GRGCYC	4 cut(s)	587, 766, 1614, 2123
BauI	CACGAG	2 cut(s)	2667, 2889
BbsI	GAAGAC	3 cut(s)	1141, 1381, 1814
Bbv12I	GWGCWC	2 cut(s)	587, 2123
BbvCI	CCTCAGC	1 cut(s)	1149
BbvI	GCAGC	6 cut(s)	48, 350, 913, 2069, 2479, 2507
BcgI	CGANNNNNNTGC	2 cut(s)	1469, 1503
BciT130I	CCWGG	6 cut(s)	306, 540, 760, 850, 974, 1115
BciVI	GTATCC	1 cut(s)	2667
BclI	TGATCA	1 cut(s)	2371
BcnI	CCSGG	1 cut(s)	580
BfaI	CTAG	9 cut(s)	129, 558, 600, 1379, 1424, 1620, 2054, 2489, 2870
BfmI	CTRYAG	3 cut(s)	62, 1792, 2493
BfoI	RGCGCY	1 cut(s)	724
BfrI	CTTAAG	1 cut(s)	1604
BfuAI	ACCTGC	2 cut(s)	262, 1799
BfuI	GTATCC	1 cut(s)	2667
BglII	AGATCT	2 cut(s)	116, 398
BisI	GCNGC	7 cut(s)	62, 339, 902, 2083, 2316, 2493, 2496
BlsI	GCNGC	7 cut(s)	63, 340, 903, 2084, 2317, 2494, 2497
BmcAI	AGTACT	1 cut(s)	2805
Bme1390I	CCNGG	7 cut(s)	306, 540, 580, 760, 850, 974, 1115
Bme18I	GGWCC	3 cut(s)	625, 970, 1111
BmeT110I	CYCGRG	1 cut(s)	1045
BmgT120I	GGNCC	4 cut(s)	625, 970, 1111, 1317
BmiI	GGNNCC	2 cut(s)	320, 722
BmrFI	CCNGG	7 cut(s)	306, 540, 580, 760, 850, 974, 1115
BmrI	ACTGGG	5 cut(s)	15, 187, 744, 1940, 2119
BmsI	GCATC	6 cut(s)	490, 1703, 2188, 2327, 2335, 2583
BmuI	ACTGGG	5 cut(s)	15, 187, 744, 1940, 2119
BpiI	GAAGAC	3 cut(s)	1141, 1381, 1814
BplI	GAGNNNNNCTC	8 cut(s)	385, 417, 866, 898, 1304, 1336, 1937, 1969
BpmI	CTGGAG	2 cut(s)	1125, 1160
Bpu10I	CCTNAGC	1 cut(s)	1149
Bpu14I	TTCGAA	1 cut(s)	1889
BpuEI	CTTGAG	5 cut(s)	1202, 1298, 1379, 1436, 2582
BpuMI	CCSGG	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	2828
BsaHI	GRCGYC	1 cut(s)	721
BsaI	GGTCTC	2 cut(s)	280, 2780
BsaJI	CCNNGG	3 cut(s)	758, 759, 848
BsaWI	WCCGGW	1 cut(s)	967
Bsc4I	CCNNNNNNNGG	5 cut(s)	477, 816, 1120, 2014, 2797
Bse118I	RCCGGY	2 cut(s)	321, 358
Bse3DI	GCAATG	4 cut(s)	139, 216, 2026, 2547
Bse8I	GATNNNNATC	1 cut(s)	2828
BseBI	CCWGG	6 cut(s)	306, 540, 760, 850, 974, 1115
BseDI	CCNNGG	3 cut(s)	758, 759, 848
BseJI	GATNNNNATC	1 cut(s)	2828
BseLI	CCNNNNNNNGG	5 cut(s)	477, 816, 1120, 2014, 2797
BseMI	GCAATG	4 cut(s)	139, 216, 2026, 2547
BseMII	CTCAG	5 cut(s)	18, 465, 1140, 1302, 1557
BseRI	GAGGAG	3 cut(s)	1166, 1856, 2729
BseXI	GCAGC	6 cut(s)	48, 350, 913, 2069, 2479, 2507
BsgI	GTGCAG	1 cut(s)	2252
Bsh1236I	CGCG	2 cut(s)	730, 2074
BshFI	GGCC	8 cut(s)	309, 444, 782, 1319, 1653, 2169, 2315, 2820
BshNI	GGYRCC	1 cut(s)	720
BsiHKAI	GWGCWC	2 cut(s)	587, 2123
BsiHKCI	CYCGRG	1 cut(s)	1045
BsiSI	CCGG	4 cut(s)	322, 359, 579, 968
BslI	CCNNNNNNNGG	5 cut(s)	477, 816, 1120, 2014, 2797
BsnI	GGCC	8 cut(s)	309, 444, 782, 1319, 1653, 2169, 2315, 2820
Bso31I	GGTCTC	2 cut(s)	280, 2780
BsoBI	CYCGRG	1 cut(s)	1045
Bsp119I	TTCGAA	1 cut(s)	1889
Bsp1286I	GDGCHC	4 cut(s)	587, 766, 1614, 2123
Bsp143I	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
BspACI	CCGC	4 cut(s)	628, 728, 2074, 2316
BspANI	GGCC	8 cut(s)	309, 444, 782, 1319, 1653, 2169, 2315, 2820
BspCNI	CTCAG	5 cut(s)	19, 466, 1141, 1303, 1558
BspFNI	CGCG	2 cut(s)	730, 2074
BspLI	GGNNCC	2 cut(s)	320, 722
BspMAI	CTGCAG	3 cut(s)	66, 1796, 2497
BspMI	ACCTGC	2 cut(s)	262, 1799
BspPI	GGATC	1 cut(s)	27
BspQI	GCTCTTC	3 cut(s)	110, 592, 1470
BspT104I	TTCGAA	1 cut(s)	1889
BspT107I	GGYRCC	1 cut(s)	720
BspTI	CTTAAG	1 cut(s)	1604
BspTNI	GGTCTC	2 cut(s)	280, 2780
BsrDI	GCAATG	4 cut(s)	139, 216, 2026, 2547
BsrFI	RCCGGY	2 cut(s)	321, 358
BssAI	RCCGGY	2 cut(s)	321, 358
BssECI	CCNNGG	3 cut(s)	758, 759, 848
BssMI	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
BssNAI	GTATAC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	721
BssSI	CACGAG	2 cut(s)	2667, 2889
Bst1107I	GTATAC	1 cut(s)	175
Bst2BI	CACGAG	2 cut(s)	2667, 2889
Bst2UI	CCWGG	6 cut(s)	306, 540, 760, 850, 974, 1115
Bst4CI	ACNGT	8 cut(s)	710, 888, 1062, 1404, 2009, 2033, 2662, 2859
Bst6I	CTCTTC	6 cut(s)	110, 592, 1470, 1728, 2688, 2813
BstACI	GRCGYC	1 cut(s)	721
BstAFI	CTTAAG	1 cut(s)	1604
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	1889
BstC8I	GCNNGC	6 cut(s)	366, 1052, 1509, 2087, 2167, 2481
BstENI	CCTNNNNNAGG	1 cut(s)	2795
BstFNI	CGCG	2 cut(s)	730, 2074
BstH2I	RGCGCY	1 cut(s)	724
BstHHI	GCGC	2 cut(s)	723, 2074
BstKTI	GATC	7 cut(s)	35, 119, 401, 1429, 1708, 2374, 2866
BstMBI	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 727, 1316, 1513, 1609, 1903, 2489
BstNI	CCWGG	6 cut(s)	306, 540, 760, 850, 974, 1115
BstNSI	RCATGY	2 cut(s)	914, 1886
BstSCI	CCNGG	7 cut(s)	304, 538, 578, 758, 848, 972, 1113
BstSFI	CTRYAG	3 cut(s)	62, 1792, 2493
BstUI	CGCG	2 cut(s)	730, 2074
BstV1I	GCAGC	6 cut(s)	48, 350, 913, 2069, 2479, 2507
BstV2I	GAAGAC	3 cut(s)	1141, 1381, 1814
BstX2I	RGATCY	3 cut(s)	32, 116, 398
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstYI	RGATCY	3 cut(s)	32, 116, 398
BstZ17I	GTATAC	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	2667
BsuRI	GGCC	8 cut(s)	309, 444, 782, 1319, 1653, 2169, 2315, 2820
BtsIMutI	CAGTG	3 cut(s)	301, 1226, 2038
BveI	ACCTGC	2 cut(s)	262, 1799
Cac8I	GCNNGC	6 cut(s)	366, 1052, 1509, 2087, 2167, 2481
CfoI	GCGC	2 cut(s)	723, 2074
Cfr10I	RCCGGY	2 cut(s)	321, 358
Cfr13I	GGNCC	4 cut(s)	625, 970, 1111, 1317
CsiI	ACCWGGT	2 cut(s)	538, 972
Csp6I	GTAC	6 cut(s)	44, 414, 1213, 1687, 2728, 2804
CviQI	GTAC	6 cut(s)	44, 414, 1213, 1687, 2728, 2804
DinI	GGCGCC	1 cut(s)	722
DpnI	GATC	7 cut(s)	34, 118, 400, 1428, 1707, 2373, 2865
DpnII	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
DraI	TTTAAA	1 cut(s)	1089
EaeI	YGGCCR	2 cut(s)	442, 2313
Eam1104I	CTCTTC	6 cut(s)	110, 592, 1470, 1728, 2688, 2813
EarI	CTCTTC	6 cut(s)	110, 592, 1470, 1728, 2688, 2813
Ecl136II	GAGCTC	2 cut(s)	585, 2121
Eco147I	AGGCCT	2 cut(s)	309, 1653
Eco24I	GRGCYC	4 cut(s)	587, 766, 1614, 2123
Eco31I	GGTCTC	2 cut(s)	280, 2780
Eco32I	GATATC	2 cut(s)	283, 389
Eco47I	GGWCC	3 cut(s)	625, 970, 1111
Eco53kI	GAGCTC	2 cut(s)	585, 2121
Eco57I	CTGAAG	2 cut(s)	1194, 1514
Eco88I	CYCGRG	1 cut(s)	1045
EcoICRI	GAGCTC	2 cut(s)	585, 2121
EcoNI	CCTNNNNNAGG	1 cut(s)	2795
EcoO109I	RGGNCCY	2 cut(s)	1111, 1317
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	6 cut(s)	304, 538, 758, 848, 972, 1113
EcoRV	GATATC	2 cut(s)	283, 389
EcoT38I	GRGCYC	4 cut(s)	587, 766, 1614, 2123
EgeI	GGCGCC	1 cut(s)	722
EheI	GGCGCC	1 cut(s)	722
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 92, 124
FauI	CCCGC	1 cut(s)	2067
FbaI	TGATCA	1 cut(s)	2371
FblI	GTMKAC	2 cut(s)	174, 964
Fnu4HI	GCNGC	7 cut(s)	62, 339, 902, 2083, 2316, 2493, 2496
FriOI	GRGCYC	4 cut(s)	587, 766, 1614, 2123
Fsp4HI	GCNGC	7 cut(s)	62, 339, 902, 2083, 2316, 2493, 2496
FspBI	CTAG	9 cut(s)	129, 558, 600, 1379, 1424, 1620, 2054, 2489, 2870
GlaI	GCGC	2 cut(s)	722, 2073
GluI	GCNGC	7 cut(s)	62, 339, 902, 2083, 2316, 2493, 2496
GsuI	CTGGAG	2 cut(s)	1125, 1160
HaeII	RGCGCY	1 cut(s)	724
HaeIII	GGCC	8 cut(s)	309, 444, 782, 1319, 1653, 2169, 2315, 2820
HapII	CCGG	4 cut(s)	322, 359, 579, 968
HhaI	GCGC	2 cut(s)	723, 2074
Hin1I	GRCGYC	1 cut(s)	721
Hin6I	GCGC	2 cut(s)	721, 2072
HinP1I	GCGC	2 cut(s)	721, 2072
HincII	GTYRAC	2 cut(s)	1437, 1917
HindII	GTYRAC	2 cut(s)	1437, 1917
HindIII	AAGCTT	4 cut(s)	1192, 2257, 2402, 2621
HpaII	CCGG	4 cut(s)	322, 359, 579, 968
HphI	GGTGA	6 cut(s)	224, 747, 934, 1654, 2554, 2731
Hpy166II	GTNNAC	7 cut(s)	175, 755, 965, 1437, 1493, 1917, 2432
Hpy8I	GTNNAC	7 cut(s)	175, 755, 965, 1437, 1493, 1917, 2432
HpyAV	CCTTC	9 cut(s)	309, 352, 1150, 1304, 1378, 1425, 1823, 2596, 2810
HpyCH4III	ACNGT	8 cut(s)	710, 888, 1062, 1404, 2009, 2033, 2662, 2859
HpyCH4IV	ACGT	1 cut(s)	2580
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 727, 1316, 1513, 1609, 1903, 2489
HpySE526I	ACGT	1 cut(s)	2580
Hsp92I	GRCGYC	1 cut(s)	721
HspAI	GCGC	2 cut(s)	721, 2072
KasI	GGCGCC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	2371
Kzo9I	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
LguI	GCTCTTC	3 cut(s)	110, 592, 1470
LmnI	GCTCC	4 cut(s)	318, 582, 1903, 2126
Lsp1109I	GCAGC	6 cut(s)	48, 350, 913, 2069, 2479, 2507
LweI	GCATC	6 cut(s)	490, 1703, 2188, 2327, 2335, 2583
MabI	ACCWGGT	2 cut(s)	538, 972
MaeI	CTAG	9 cut(s)	129, 558, 600, 1379, 1424, 1620, 2054, 2489, 2870
MaeII	ACGT	1 cut(s)	2580
MaeIII	GTNAC	5 cut(s)	212, 1398, 1446, 2630, 2662
MalI	GATC	7 cut(s)	34, 118, 400, 1428, 1707, 2373, 2865
MboI	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
MfeI	CAATTG	1 cut(s)	1812
MflI	RGATCY	3 cut(s)	32, 116, 398
MhlI	GDGCHC	4 cut(s)	587, 766, 1614, 2123
MlsI	TGGCCA	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	444
Mly113I	GGCGCC	1 cut(s)	721
MlyI	GAGTC	4 cut(s)	310, 1370, 1946, 2884
MmeI	TCCRAC	3 cut(s)	440, 1452, 1929
Mox20I	TGGCCA	1 cut(s)	444
MroXI	GAANNNNTTC	3 cut(s)	104, 1061, 1194
MscI	TGGCCA	1 cut(s)	444
MslI	CAYNNNNRTG	2 cut(s)	1035, 2367
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	2 cut(s)	509, 2498
MspCI	CTTAAG	1 cut(s)	1604
MspI	CCGG	4 cut(s)	322, 359, 579, 968
MspR9I	CCNGG	7 cut(s)	306, 540, 580, 760, 850, 974, 1115
MssI	GTTTAAAC	1 cut(s)	1089
MunI	CAATTG	1 cut(s)	1812
MvaI	CCWGG	6 cut(s)	306, 540, 760, 850, 974, 1115
MvnI	CGCG	2 cut(s)	730, 2074
MwoI	GCNNNNNNNGC	7 cut(s)	77, 727, 1316, 1513, 1609, 1903, 2489
NarI	GGCGCC	1 cut(s)	721
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
NlaIV	GGNNCC	2 cut(s)	320, 722
NmuCI	GTSAC	3 cut(s)	212, 1446, 2630
NspI	RCATGY	2 cut(s)	914, 1886
NspV	TTCGAA	1 cut(s)	1889
PaeR7I	CTCGAG	1 cut(s)	1045
PasI	CCCWGGG	1 cut(s)	759
PceI	AGGCCT	2 cut(s)	309, 1653
PciSI	GCTCTTC	3 cut(s)	110, 592, 1470
PdmI	GAANNNNTTC	3 cut(s)	104, 1061, 1194
PfeI	GAWTC	9 cut(s)	249, 842, 1231, 1263, 1645, 1973, 2216, 2354, 2642
PflFI	GACNNNGTC	1 cut(s)	2281
PflMI	CCANNNNNTGG	1 cut(s)	816
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	7 cut(s)	63, 340, 903, 2084, 2317, 2494, 2497
PleI	GAGTC	4 cut(s)	309, 1369, 1946, 2883
PluTI	GGCGCC	1 cut(s)	724
PmeI	GTTTAAAC	1 cut(s)	1089
PpsI	GAGTC	4 cut(s)	309, 1369, 1946, 2883
PpuMI	RGGWCCY	1 cut(s)	1111
Psp124BI	GAGCTC	2 cut(s)	587, 2123
Psp5II	RGGWCCY	1 cut(s)	1111
Psp6I	CCWGG	6 cut(s)	304, 538, 758, 848, 972, 1113
PspGI	CCWGG	6 cut(s)	304, 538, 758, 848, 972, 1113
PspN4I	GGNNCC	2 cut(s)	320, 722
PspPI	GGNCC	4 cut(s)	625, 970, 1111, 1317
PspPPI	RGGWCCY	1 cut(s)	1111
PspXI	VCTCGAGB	1 cut(s)	1045
PstI	CTGCAG	3 cut(s)	66, 1796, 2497
PsuI	RGATCY	3 cut(s)	32, 116, 398
PsyI	GACNNNGTC	1 cut(s)	2281
PvuII	CAGCTG	2 cut(s)	509, 2498
RsaI	GTAC	6 cut(s)	45, 415, 1214, 1688, 2729, 2805
RsaNI	GTAC	6 cut(s)	44, 414, 1213, 1687, 2728, 2804
RseI	CAYNNNNRTG	2 cut(s)	1035, 2367
SacI	GAGCTC	2 cut(s)	587, 2123
SapI	GCTCTTC	3 cut(s)	110, 592, 1470
SatI	GCNGC	7 cut(s)	62, 339, 902, 2083, 2316, 2493, 2496
Sau3AI	GATC	7 cut(s)	32, 116, 398, 1426, 1705, 2371, 2863
Sau96I	GGNCC	4 cut(s)	625, 970, 1111, 1317
ScaI	AGTACT	1 cut(s)	2805
SchI	GAGTC	4 cut(s)	310, 1370, 1946, 2884
ScrFI	CCNGG	7 cut(s)	306, 540, 580, 760, 850, 974, 1115
SduI	GDGCHC	4 cut(s)	587, 766, 1614, 2123
SexAI	ACCWGGT	2 cut(s)	538, 972
SfaNI	GCATC	6 cut(s)	490, 1703, 2188, 2327, 2335, 2583
SfcI	CTRYAG	3 cut(s)	62, 1792, 2493
SfoI	GGCGCC	1 cut(s)	722
Sfr274I	CTCGAG	1 cut(s)	1045
SfuI	TTCGAA	1 cut(s)	1889
SinI	GGWCC	3 cut(s)	625, 970, 1111
SlaI	CTCGAG	1 cut(s)	1045
SmiMI	CAYNNNNRTG	2 cut(s)	1035, 2367
SmlI	CTYRAG	7 cut(s)	1045, 1181, 1277, 1358, 1451, 1604, 2597
SmoI	CTYRAG	7 cut(s)	1045, 1181, 1277, 1358, 1451, 1604, 2597
SseBI	AGGCCT	2 cut(s)	309, 1653
SsiI	CCGC	4 cut(s)	628, 728, 2074, 2316
SspDI	GGCGCC	1 cut(s)	720
SspMI	CTAG	9 cut(s)	129, 558, 600, 1379, 1424, 1620, 2054, 2489, 2870
SstI	GAGCTC	2 cut(s)	587, 2123
StuI	AGGCCT	2 cut(s)	309, 1653
StyD4I	CCNGG	7 cut(s)	304, 538, 578, 758, 848, 972, 1113
TaaI	ACNGT	8 cut(s)	710, 888, 1062, 1404, 2009, 2033, 2662, 2859
TaiI	ACGT	1 cut(s)	2583
TaqI	TCGA	8 cut(s)	265, 383, 433, 1046, 1366, 1429, 1889, 2905
TatI	WGTACW	4 cut(s)	413, 1686, 2727, 2803
TauI	GCSGC	1 cut(s)	2318
TfiI	GAWTC	9 cut(s)	249, 842, 1231, 1263, 1645, 1973, 2216, 2354, 2642
TscAI	CASTG	3 cut(s)	301, 1233, 2038
TseFI	GTSAC	3 cut(s)	212, 1446, 2630
TseI	GCWGC	6 cut(s)	61, 338, 901, 2082, 2492, 2495
Tsp45I	GTSAC	3 cut(s)	212, 1446, 2630
TspDTI	ATGAA	7 cut(s)	17, 110, 759, 855, 1570, 2240, 2313
TspGWI	ACGGA	3 cut(s)	540, 654, 1709
TspRI	CASTG	3 cut(s)	301, 1233, 2038
Tth111I	GACNNNGTC	1 cut(s)	2281
Van91I	CCANNNNNTGG	1 cut(s)	816
Vha464I	CTTAAG	1 cut(s)	1604
VpaK11BI	GGWCC	3 cut(s)	625, 970, 1111
XagI	CCTNNNNNAGG	1 cut(s)	2795
XapI	RAATTY	7 cut(s)	289, 371, 920, 1726, 2147, 2685, 2894
XceI	RCATGY	2 cut(s)	914, 1886
XhoI	CTCGAG	1 cut(s)	1045
XmiI	GTMKAC	2 cut(s)	174, 964
XmnI	GAANNNNTTC	3 cut(s)	104, 1061, 1194
XspI	CTAG	9 cut(s)	129, 558, 600, 1379, 1424, 1620, 2054, 2489, 2870
ZrmI	AGTACT	1 cut(s)	2805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.