FvH4_7g24210

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001586
Physical Location & Seq
Forward (+)
18711319 .. 18714333
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24210.t2

Sequence Viewer

Length: 687 bp
ATGGCTCCAAGAAGAAGAGGTCCACGGGGTCGACCAACCCAGAAGGTTTCTCGTATGGCGGCTGCCGTTGAGGCCATGGCGGAAATGGGTTTTGAGCCCAAACTGGTTCGTCAGAAAGTGAACCGGTTACTGAAAGACGACCTTTATGGAGATGAGGGCTGGCGTTTTATTGAAGAATCCTCATACAGTGTACTACTTGATGCTCTTCTGGAGGATGAAACAAGTGGTGATGATAATGAGAATGCTTCTCTGTCAAAAGACGGAAACCATGTTGAAACTACCGGGGCTGGACCCTCATCGAGCAAGGTTTTATTGCCATGTTCAAATCTTGAGGCTGTGAACATAACATTACAGAGCAAGGATGATCTGGATCCTGCATCACACAATGAAGCTCTGAACAATTCACCCCCCACTGAATTGCCTGATGCTAGTAACTTCCTACCTACTGTAGTAGAAACACAAGGCCAGGAAGGAACTCCAGTTACCCACTCTGCACAACAAGTCGATACTCTTCCAACCAGAAGGCGCAGACCATACTACGGTTGGGTTGGATGTGAAGATGATGATTTTGTGGTACTAACAGAGGCTCCATTGCCAGGAGTGTTGCGGAAAATGTTTATTCCGAATGTTGATTCTGGTAAGAGAAAGCGCAAGAGCAGGTGGGATGTGCAGCCTCAGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

229

Amino Acids

25.28

Weight (kDa)

5.04

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 14 - 72 6e-17 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 648
Acc36I ACCTGC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 31
AciI CCGC 3 cut(s) 59, 80, 607
AclWI GGATC 2 cut(s) 365, 378
AfaI GTAC 2 cut(s) 192, 576
AfiI CCNNNNNNNGG 2 cut(s) 539, 596
AgeI ACCGGT 1 cut(s) 123
AgsI TTSAA 3 cut(s) 173, 275, 324
AjnI CCWGG 2 cut(s) 465, 595
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
AlwI GGATC 2 cut(s) 365, 378
AoxI GGCC 2 cut(s) 72, 463
ApeKI GCWGC 2 cut(s) 62, 670
AsiGI ACCGGT 1 cut(s) 123
AspLEI GCGC 2 cut(s) 528, 651
AspS9I GGNCC 2 cut(s) 20, 290
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 239, 396
AvaII GGWCC 2 cut(s) 20, 290
AxyI CCTNAGG 1 cut(s) 675
BamHI GGATCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 49, 682
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 467, 597
BcnI CCSGG 1 cut(s) 283
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 648
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 60, 63, 671
BlsI GCNGC 3 cut(s) 61, 64, 672
Bme1390I CCNGG 3 cut(s) 283, 467, 597
Bme18I GGWCC 2 cut(s) 20, 290
BmgT120I GGNCC 2 cut(s) 20, 290
BmiI GGNNCC 4 cut(s) 6, 292, 372, 588
BmrFI CCNGG 3 cut(s) 283, 467, 597
BmsI GCATC 3 cut(s) 190, 386, 415
BpmI CTGGAG 2 cut(s) 230, 462
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 23, 75, 282
BsaWI WCCGGW 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 596
Bse118I RCCGGY 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 108, 479
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 1 cut(s) 590
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 2 cut(s) 467, 597
BseDI CCNNGG 3 cut(s) 23, 75, 282
BseGI GGATG 4 cut(s) 220, 367, 557, 670
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 539, 596
BseMI GCAATG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 108, 479
BseXI GCAGC 2 cut(s) 49, 682
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 2 cut(s) 74, 465
BshTI ACCGGT 1 cut(s) 123
BsiSI CCGG 2 cut(s) 124, 282
BslI CCNNNNNNNGG 2 cut(s) 539, 596
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 74, 465
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 364, 370
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 3 cut(s) 59, 80, 607
BspANI GGCC 2 cut(s) 74, 465
BspLI GGNNCC 4 cut(s) 6, 292, 372, 588
BspMI ACCTGC 1 cut(s) 648
BspPI GGATC 2 cut(s) 365, 378
BspQI GCTCTTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 123
BsrI ACTGG 2 cut(s) 108, 479
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 23, 75, 282
BssMI GATC 2 cut(s) 364, 370
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 467, 597
Bst4CI ACNGT 3 cut(s) 188, 448, 542
Bst6I CTCTTC 3 cut(s) 10, 210, 516
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 675
BstDSI CCRYGG 2 cut(s) 23, 75
BstF5I GGATG 4 cut(s) 220, 367, 557, 670
BstHHI GCGC 2 cut(s) 528, 651
BstKTI GATC 2 cut(s) 367, 373
BstMBI GATC 2 cut(s) 364, 370
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 467, 597
BstSCI CCNGG 3 cut(s) 281, 465, 595
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 49, 682
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 2 cut(s) 74, 465
BtgI CCRYGG 2 cut(s) 23, 75
BtsCI GGATG 4 cut(s) 220, 367, 557, 670
BtsIMutI CAGTG 2 cut(s) 193, 411
BveI ACCTGC 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 2 cut(s) 528, 651
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 20, 290
Csp6I GTAC 2 cut(s) 191, 575
CspAI ACCGGT 1 cut(s) 123
CviAII CATG 3 cut(s) 76, 269, 318
CviQI GTAC 2 cut(s) 191, 575
DdeI CTNAG 1 cut(s) 675
DpnI GATC 2 cut(s) 366, 372
DpnII GATC 2 cut(s) 364, 370
Eam1104I CTCTTC 3 cut(s) 10, 210, 516
EarI CTCTTC 3 cut(s) 10, 210, 516
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 20, 290
Eco81I CCTNAGG 1 cut(s) 675
EcoRII CCWGG 2 cut(s) 465, 595
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 3 cut(s) 79, 272, 321
FaiI YATR 9 cut(s) 56, 77, 147, 184, 270, 319, 344, 535, 683
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 3 cut(s) 75, 268, 317
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 60, 63, 671
FokI GGATG 4 cut(s) 227, 374, 564, 677
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 60, 63, 671
FspBI CTAG 1 cut(s) 429
GlaI GCGC 2 cut(s) 527, 650
GluI GCNGC 3 cut(s) 60, 63, 671
GsuI CTGGAG 2 cut(s) 230, 462
HaeIII GGCC 2 cut(s) 74, 465
HapII CCGG 2 cut(s) 124, 282
HhaI GCGC 2 cut(s) 528, 651
Hin1II CATG 3 cut(s) 79, 272, 321
Hin6I GCGC 2 cut(s) 526, 649
HinP1I GCGC 2 cut(s) 526, 649
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HinfI GANTC 2 cut(s) 176, 632
HpaII CCGG 2 cut(s) 124, 282
HphI GGTGA 2 cut(s) 239, 396
Hpy166II GTNNAC 5 cut(s) 23, 32, 121, 191, 340
Hpy188I TCNGA 3 cut(s) 114, 396, 624
Hpy188III TCNNGA 4 cut(s) 209, 329, 368, 677
Hpy8I GTNNAC 5 cut(s) 23, 32, 121, 191, 340
HpyAV CCTTC 3 cut(s) 37, 464, 516
HpyCH4III ACNGT 3 cut(s) 188, 448, 542
HpyCH4V TGCA 3 cut(s) 377, 494, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 675
Hsp92II CATG 3 cut(s) 79, 272, 321
HspAI GCGC 2 cut(s) 526, 649
Kzo9I GATC 2 cut(s) 364, 370
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 2 cut(s) 10, 592
Lsp1109I GCAGC 2 cut(s) 49, 682
LweI GCATC 3 cut(s) 190, 386, 415
MaeI CTAG 1 cut(s) 429
MaeIII GTNAC 3 cut(s) 126, 431, 481
MalI GATC 2 cut(s) 366, 372
MboI GATC 2 cut(s) 364, 370
MboII GAAGA 6 cut(s) 24, 27, 185, 197, 503, 569
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 400, 416
MmeI TCCRAC 2 cut(s) 529, 539
MnlI CCTC 9 cut(s) 11, 64, 148, 190, 205, 304, 325, 577, 684
MspI CCGG 2 cut(s) 124, 282
MspR9I CCNGG 3 cut(s) 283, 467, 597
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 467, 597
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 283
NcoI CCATGG 1 cut(s) 75
NdeII GATC 2 cut(s) 364, 370
NlaIII CATG 3 cut(s) 79, 272, 321
NlaIV GGNNCC 4 cut(s) 6, 292, 372, 588
PaqCI CACCTGC 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 210
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 176, 632
PinAI ACCGGT 1 cut(s) 123
PkrI GCNGC 3 cut(s) 61, 64, 672
Psp6I CCWGG 2 cut(s) 465, 595
PspGI CCWGG 2 cut(s) 465, 595
PspN4I GGNNCC 4 cut(s) 6, 292, 372, 588
PspPI GGNCC 2 cut(s) 20, 290
PsrI GAACNNNNNNTAC 2 cut(s) 466, 498
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 192, 576
RsaNI GTAC 2 cut(s) 191, 575
SalI GTCGAC 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 210
SatI GCNGC 3 cut(s) 60, 63, 671
Sau3AI GATC 2 cut(s) 364, 370
Sau96I GGNCC 2 cut(s) 20, 290
ScrFI CCNGG 3 cut(s) 283, 467, 597
SduI GDGCHC 1 cut(s) 99
SetI ASST 7 cut(s) 22, 48, 144, 309, 394, 445, 662
SfaNI GCATC 3 cut(s) 190, 386, 415
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 20, 290
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 400, 416
SsiI CCGC 3 cut(s) 59, 80, 607
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 3 cut(s) 281, 465, 595
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 3 cut(s) 188, 448, 542
TaqI TCGA 3 cut(s) 31, 299, 504
TasI AATT 2 cut(s) 400, 416
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 176, 632
TscAI CASTG 2 cut(s) 193, 418
TseI GCWGC 2 cut(s) 62, 670
TspDTI ATGAA 2 cut(s) 231, 402
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 193, 418
VpaK11BI GGWCC 2 cut(s) 20, 290
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 540
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.