Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001586

Physical Location & Seq

Genomic Coordinates Forward (+)

22100321 .. 22100600

Gene Structure 280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCCAGATGCTAACGATTGTCATCGAGAAGACAGACTTGCACCCCGAAGGCCTAGACCTTACTACGGTTGGATTTGTAGCGATGACGAGGAAGATCCAGTGGTAATGGCATCGTCTCCATTGTCAGAGTTGGTTAAATTGCTTATTAGGCCAGATAAGAAGAGAAAGCGGAAGTCGAGGTGGGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WIYLD

Protein Analysis

64

Amino Acids

7.53

Weight (kDa)

8.71

Isoelectric Point (pI)

88.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT2G40020 AT2G40020 AT2G40020 AT2G40020
fragaria_vesca	FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_7g23100 FvH4_7g24210 FvH4_7g24210
malus_domestica	MD01G1149600.v1.1 MD17G1067400.v1.1
prunus_persica	Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1
pyrus_communis	pycom01g16760 pycom07g19830 pycom17g06770
rosa_chinensis	RchiOBHm_Chr1g0369781 RchiOBHm_Chr6g0274431
rosa_laevigata	RLG00000013543 RLG00000027106
rosa_multiflora	Rmu_sc0001154.1_g000041 Rmu_sc0001289.1_g000015 Rmu_sc0007743.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287390 Rroxscaffold_7G00194230
rosa_rugosa	Rorug01G0352100 Rorug01G0352200 Rorug01G0352300 Rorug06G0081800
rosa_samantha	Rh1AG360800 Rh1BG324500 Rh1CG337700 Rh1DG354900 Rh6AG198200 Rh6BG201500 Rh6CG202200 Rh6DG192700
rosa_wichuraiana	Rw1G031760 Rw6G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	50, 149
BbsI	GAAGAC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	52, 151
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	52, 151
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	52, 151
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	52, 151
BtgZI	GCGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	105
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	2 cut(s)	52, 151
CviKI_1	RGCY	2 cut(s)	52, 151
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	1 cut(s)	186
FspBI	CTAG	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	52, 151
Hin1II	CATG	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	3 cut(s)	18, 111, 165
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	54
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	3 cut(s)	41, 104, 172
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	2 cut(s)	82, 171
MseI	TTAA	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	190
NspI	RCATGY	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	52
PciI	ACATGT	1 cut(s)	186
PscI	ACATGT	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	94
SetI	ASST	2 cut(s)	61, 182
SfaNI	GCATC	1 cut(s)	119
SgeI	CNNG	8 cut(s)	17, 38, 50, 57, 66, 100, 110, 164
Sse9I	AATT	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	25, 176
TasI	AATT	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	105
TspRI	CASTG	1 cut(s)	105
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.