Rmu_sc0001289.1_g000015

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001289.1
OG0001586
Physical Location & Seq
Reverse (-)
70477 .. 73718
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001289.1_g000015.1.cds

Sequence Viewer

Length: 561 bp
atggctccaagaggtcggcccagaaagaggggtaaacctcatttggatgcagctcttaaggctatggctgcccttacttttccagagaaactagtccgcgatacagtggatgagttacttgaagtttatggaggagatgatggatggggctttattgaagactcttcttattctgtccttattgatactcttctcgaaagacaaaaagatggtactgaaaagtggattgcttctccacaagatcatgcaagaagtgaacatgatactgaagcttcagctgttctgccttcctcaagcagggttagttcacctacctgcacaccaatggaggttttgcaaccacggactaatcaacctctgaactctgcaccactgactcaaatgccagattctaaggattgtcttccatccaagaggcgtagaccatatctcggttggataggcaatgatgatgaggatcttgttcttgtggaactcactccagctccattgccacaagggctgaaacttctttattgtgtaatgggaagtgaatctgcaagacaaattggaaatatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

186

Amino Acids

20.56

Weight (kDa)

5.26

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 421
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 465
AcuI CTGAAG 2 cut(s) 258, 288
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 27, 297, 431
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 122, 158
AhlI ACTAGT 1 cut(s) 91
AluBI AGCT 4 cut(s) 53, 272, 278, 485
AluI AGCT 4 cut(s) 53, 272, 278, 485
AlwI GGATC 1 cut(s) 465
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 50, 68
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 300
BbsI GAAGAC 2 cut(s) 165, 395
BbvI GCAGC 2 cut(s) 55, 62
BccI CCATC 4 cut(s) 134, 138, 203, 415
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 1 cut(s) 92
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 499
BisI GCNGC 2 cut(s) 51, 69
BlsI GCNGC 2 cut(s) 52, 70
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 165, 395
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 297, 431
Bse3DI GCAATG 2 cut(s) 451, 488
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 4 cut(s) 52, 115, 149, 407
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 27, 297, 431
BseMI GCAATG 2 cut(s) 451, 488
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 55, 62
BsgI GTGCAG 2 cut(s) 301, 351
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 27, 297, 431
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 241, 457
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 19
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 451, 488
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 2 cut(s) 241, 457
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 169, 195
BstAFI CTTAAG 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 341
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 4 cut(s) 52, 115, 149, 407
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 2 cut(s) 244, 460
BstMBI GATC 2 cut(s) 241, 457
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 499
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 55, 62
BstV2I GAAGAC 2 cut(s) 165, 395
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 4 cut(s) 52, 115, 149, 407
BtsIMutI CAGTG 2 cut(s) 111, 371
BveI ACCTGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 245, 260
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 243, 459
DpnII GATC 2 cut(s) 241, 457
Eam1104I CTCTTC 2 cut(s) 169, 195
EarI CTCTTC 2 cut(s) 169, 195
Eco57I CTGAAG 2 cut(s) 258, 288
EcoNI CCTNNNNNAGG 1 cut(s) 295
FaeI CATG 2 cut(s) 248, 263
FaiI YATR 6 cut(s) 65, 129, 246, 261, 427, 557
FatI CATG 2 cut(s) 244, 259
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 51, 69
FokI GGATG 4 cut(s) 59, 122, 156, 394
Fsp4HI GCNGC 2 cut(s) 51, 69
FspBI CTAG 1 cut(s) 92
GluI GCNGC 2 cut(s) 51, 69
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 2 cut(s) 248, 263
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 4 cut(s) 161, 376, 389, 533
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 4 cut(s) 35, 257, 308, 422
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 2 cut(s) 83, 194
Hpy8I GTNNAC 4 cut(s) 35, 257, 308, 422
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 6 cut(s) 50, 248, 318, 337, 368, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 499
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 2 cut(s) 248, 263
Kzo9I GATC 2 cut(s) 241, 457
LmnI GCTCC 2 cut(s) 10, 490
LpnPI CCDG 6 cut(s) 34, 96, 283, 328, 399, 495
Lsp1109I GCAGC 2 cut(s) 55, 62
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 114
MalI GATC 2 cut(s) 243, 459
MboI GATC 2 cut(s) 241, 457
MboII GAAGA 4 cut(s) 156, 170, 182, 395
MflI RGATCY 1 cut(s) 457
MluCI AATT 1 cut(s) 546
MlyI GAGTC 2 cut(s) 155, 370
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 9 cut(s) 5, 21, 48, 125, 301, 322, 366, 408, 448
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 2 cut(s) 45, 323
MspA1I CMGCKG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 56
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 499
NdeII GATC 2 cut(s) 241, 457
NlaIII CATG 2 cut(s) 248, 263
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 389, 533
PkrI GCNGC 2 cut(s) 52, 70
PleI GAGTC 2 cut(s) 155, 370
PpsI GAGTC 2 cut(s) 155, 370
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 2 cut(s) 45, 323
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 51, 69
Sau3AI GATC 2 cut(s) 241, 457
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 155, 370
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 45, 323
SmlI CTYRAG 2 cut(s) 56, 292
SmoI CTYRAG 2 cut(s) 56, 292
SpeI ACTAGT 1 cut(s) 91
Sse9I AATT 1 cut(s) 546
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 546
TfiI GAWTC 2 cut(s) 389, 533
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 111, 378
TseI GCWGC 2 cut(s) 50, 68
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 2 cut(s) 111, 378
Vha464I CTTAAG 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.