AT1G45248

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001586
Physical Location & Seq
Reverse (-)
17162813 .. 17164779
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G45248.2

Sequence Viewer

Length: 369 bp
ATGGCTCCCGAAGGTCCCAAAGGAAGAAAAAATATTGGATTGAGGCGTGAGGATGCAGCACGAGACCGCATGAAAGAGTTTGGGTTTAAGAAGCCTGTTATCAATGCGAGTATCAAGCAAGTGCTAAAGGTGTATGGTGAGGACCAATGGTTTCTGATTGAAGATGCTAACTATGAGGTCTCCTTAATATTTCCCTTAAAAAGCAAGAGGAACAAGCCTACCGATTGGCGGCCGAGGAACACGAAGAAACAGCTCAGGAAGAACCAGAAGAAGAAAAGCTTTTCAATTCGTAGAAGCACCACCAGTAGATTATGCACACCATTCTGTTGGAGGTGCGCAGAGTTCTCACTGTGGATGGCTAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

122

Amino Acids

14.48

Weight (kDa)

10.42

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 11 - 62 6e-20 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 337
AciI CCGC 2 cut(s) 67, 229
AcoI YGGCCR 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 2 cut(s) 161, 285
AluBI AGCT 2 cut(s) 253, 279
AluI AGCT 2 cut(s) 253, 279
Alw26I GTCTC 2 cut(s) 57, 184
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 14, 142
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 2 cut(s) 14, 142
BauI CACGAG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 57, 184
BisI GCNGC 2 cut(s) 57, 230
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 2 cut(s) 58, 231
Bme18I GGWCC 2 cut(s) 14, 142
BmgT120I GGNCC 2 cut(s) 14, 142
BmiI GGNNCC 2 cut(s) 6, 16
BmsI GCATC 2 cut(s) 43, 154
Bpu10I CCTNAGC 1 cut(s) 254
Bpu1102I GCTNAGC 1 cut(s) 360
BsaI GGTCTC 2 cut(s) 57, 184
BsaJI CCNNGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 58, 360
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 303
BseX3I CGGCCG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 57, 184
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 2 cut(s) 57, 184
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 2 cut(s) 67, 229
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 6, 16
BspTNI GGTCTC 2 cut(s) 57, 184
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 233
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 254, 360
BstF5I GGATG 2 cut(s) 58, 360
BstHHI GCGC 1 cut(s) 338
BstMAI GTCTC 2 cut(s) 57, 184
BstMCI CGRYCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 230
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 2 cut(s) 58, 360
BtsIMutI CAGTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 14, 142
CviAII CATG 1 cut(s) 70
CviJI RGCY 7 cut(s) 5, 94, 217, 232, 253, 279, 359
CviKI_1 RGCY 7 cut(s) 5, 94, 217, 232, 253, 279, 359
DdeI CTNAG 2 cut(s) 254, 360
EaeI YGGCCR 1 cut(s) 230
EagI CGGCCG 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 230
Eco31I GGTCTC 2 cut(s) 57, 184
Eco47I GGWCC 2 cut(s) 14, 142
Eco52I CGGCCG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 14
FaeI CATG 1 cut(s) 73
FaiI YATR 4 cut(s) 71, 135, 174, 313
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 57, 230
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 57, 230
FspI TGCGCA 1 cut(s) 337
GlaI GCGC 1 cut(s) 337
GluI GCNGC 2 cut(s) 57, 230
HaeIII GGCC 1 cut(s) 232
HhaI GCGC 1 cut(s) 338
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 277
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 8, 256
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 56, 315
HpyF3I CTNAG 2 cut(s) 254, 360
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 108, 241, 278, 316
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 43, 154
MboII GAAGA 6 cut(s) 36, 173, 256, 271, 280, 283
MluCI AATT 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 7 cut(s) 36, 43, 133, 169, 201, 228, 324
MseI TTAA 3 cut(s) 87, 185, 197
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 6, 16
NmeAIII GCCGAG 1 cut(s) 258
NsbI TGCGCA 1 cut(s) 337
PkrI GCNGC 2 cut(s) 58, 231
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 6, 16
PspPI GGNCC 2 cut(s) 14, 142
PspPPI RGGWCCY 1 cut(s) 14
SaqAI TTAA 3 cut(s) 87, 185, 197
SatI GCNGC 2 cut(s) 57, 230
Sau96I GGNCC 2 cut(s) 14, 142
SetI ASST 6 cut(s) 16, 132, 180, 255, 281, 335
SfaNI GCATC 2 cut(s) 43, 154
SinI GGWCC 2 cut(s) 14, 142
Sse9I AATT 1 cut(s) 285
SsiI CCGC 2 cut(s) 67, 229
SspI AATATT 2 cut(s) 34, 189
TaaI ACNGT 1 cut(s) 351
TasI AATT 1 cut(s) 285
TauI GCSGC 1 cut(s) 232
Tru1I TTAA 3 cut(s) 87, 185, 197
Tru9I TTAA 3 cut(s) 87, 185, 197
TscAI CASTG 1 cut(s) 354
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 2 cut(s) 14, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.