Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001154.1

Orthogroup ID

OG0001586

Physical Location & Seq

Genomic Coordinates Forward (+)

220688 .. 223498

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001154.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggctccaagaagaggtcgaggtggaccacccaagacttctcgtatggctgccgccgttgaggccatggcggacatgggtttcgagcccaaactggtccgtcagaaggtgaaccggttactaaaaaaagacctttatggagaagagggctggcgttttattgaagaaggttcttacagtgttctacttgaagcccttctggaggagcaaacagatggtgatgaaaatgggaatgcttctccggaaaaatcaaaaggtggaaaagatgctgaaactgcaggagctggaccctcctcgagcaagaatgcttctccgaaaaaatcaacctatggaaatgacgctgaaacttcagaagctggactattaagcaaggatgtatctttacaaactgatgcaagaggtgtaaatgatactgaaacttcaggagctggactatccataatcaagtatgtgcctccacaaactgatgcaagaggtgtaaatgatgctgaatcatcaggagctggaccttcctcaagcaaggttgcttctgtagaaaatgatccaagtggtggaagtgaggttgaaacatcaggacctgtaccctcctcctcaaccaaggtttttcttccatgctcaaacattgagactgtgagcagaacattacagagcaaggatgatctggattcctcatcacataacgaacctttgaccactgcatcgcccactcaattgcctgatgctggtaactttctcctacctactgaaggagaaatacaaggccagcaaggtactcctgttacccactctgtacaagaagttgatactcttccagccaggaggcgaagaccataccatggttgggttggttgtgatgatgatgattttgtggaacaaacagaggctccattgccagaagtgttgcggaaaatgttcattctgactgttgattctggtaagagaaagcgcaagagaaggtgggatgtgaagcctgagaatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WIYLD

Protein Analysis

327

Amino Acids

35.01

Weight (kDa)

5.01

Isoelectric Point (pI)

62.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT2G40020 AT2G40020 AT2G40020 AT2G40020
fragaria_vesca	FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_7g23100 FvH4_7g24210 FvH4_7g24210
malus_domestica	MD01G1149600.v1.1 MD17G1067400.v1.1
prunus_persica	Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1
pyrus_communis	pycom01g16760 pycom07g19830 pycom17g06770
rosa_chinensis	RchiOBHm_Chr1g0369781 RchiOBHm_Chr6g0274431
rosa_laevigata	RLG00000013543 RLG00000027106
rosa_multiflora	Rmu_sc0001154.1_g000041 Rmu_sc0001289.1_g000015 Rmu_sc0007743.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287390 Rroxscaffold_7G00194230
rosa_rugosa	Rorug01G0352100 Rorug01G0352200 Rorug01G0352300 Rorug06G0081800
rosa_samantha	Rh1AG360800 Rh1BG324500 Rh1CG337700 Rh1DG354900 Rh6AG198200 Rh6BG201500 Rh6CG202200 Rh6DG192700
rosa_wichuraiana	Rw1G031760 Rw6G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	551, 836
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	3 cut(s)	54, 71, 904
AclWI	GGATC	1 cut(s)	536
AcuI	CTGAAG	3 cut(s)	333, 405, 765
AfaI	GTAC	3 cut(s)	582, 772, 792
AfiI	CCNNNNNNNGG	8 cut(s)	14, 106, 202, 551, 722, 746, 836, 841
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	164, 191, 566
AjnI	CCWGG	1 cut(s)	815
AluBI	AGCT	4 cut(s)	284, 356, 428, 503
AluI	AGCT	4 cut(s)	284, 356, 428, 503
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	5 cut(s)	284, 356, 428, 503, 578
Ama87I	CYCGRG	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	2 cut(s)	63, 760
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	114
Asp700I	GAANNNNTTC	2 cut(s)	195, 911
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
AsuHPI	GGTGA	2 cut(s)	121, 230
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	5 cut(s)	26, 97, 287, 506, 575
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BanII	GRGCYC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbsI	GAAGAC	1 cut(s)	832
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	817
BcoDI	GTCTC	1 cut(s)	620
BfmI	CTRYAG	2 cut(s)	276, 531
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
Bme1390I	CCNGG	1 cut(s)	817
Bme18I	GGWCC	5 cut(s)	26, 97, 287, 506, 575
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
BmiI	GGNNCC	3 cut(s)	6, 289, 885
BmrFI	CCNGG	1 cut(s)	817
BmsI	GCATC	6 cut(s)	256, 382, 457, 475, 707, 709
BpiI	GAAGAC	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	499
BsaJI	CCNNGG	3 cut(s)	66, 597, 835
BsaWI	WCCGGW	2 cut(s)	114, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	8 cut(s)	14, 106, 202, 551, 722, 746, 836, 841
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	887
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	817
BseDI	CCNNGG	3 cut(s)	66, 597, 835
BseGI	GGATG	3 cut(s)	379, 661, 967
BseLI	CCNNNNNNNGG	8 cut(s)	14, 106, 202, 551, 722, 746, 836, 841
BseMI	GCAATG	1 cut(s)	887
BseMII	CTCAG	1 cut(s)	963
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	4 cut(s)	218, 283, 577, 580
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	65, 762
BshTI	ACCGGT	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	115, 242
BslI	CCNNNNNNNGG	8 cut(s)	14, 106, 202, 551, 722, 746, 836, 841
BsmAI	GTCTC	1 cut(s)	620
BsmI	GAATGC	2 cut(s)	238, 310
BsnI	GGCC	2 cut(s)	65, 762
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	2 cut(s)	541, 658
Bsp19I	CCATGG	2 cut(s)	66, 835
BspACI	CCGC	3 cut(s)	54, 71, 904
BspANI	GGCC	2 cut(s)	65, 762
BspCNI	CTCAG	1 cut(s)	964
BspEI	TCCGGA	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	6, 289, 885
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	887
BsrFI	RCCGGY	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	99
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	66, 597, 835
BssMI	GATC	2 cut(s)	541, 658
BssT1I	CCWWGG	3 cut(s)	66, 597, 835
Bst2UI	CCWGG	1 cut(s)	817
Bst4CI	ACNGT	3 cut(s)	179, 631, 925
Bst6I	CTCTTC	3 cut(s)	7, 138, 813
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	152, 764
BstDEI	CTNAG	1 cut(s)	972
BstDSI	CCRYGG	2 cut(s)	66, 835
BstENI	CCTNNNNNAGG	2 cut(s)	200, 744
BstF5I	GGATG	3 cut(s)	379, 661, 967
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	2 cut(s)	544, 661
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	2 cut(s)	541, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 275
BstNI	CCWGG	1 cut(s)	817
BstSCI	CCNGG	1 cut(s)	815
BstSFI	CTRYAG	2 cut(s)	276, 531
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	832
BsuRI	GGCC	2 cut(s)	65, 762
BtgI	CCRYGG	2 cut(s)	66, 835
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	3 cut(s)	379, 661, 967
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	184, 693
Cac8I	GCNNGC	2 cut(s)	152, 764
CaiI	CAGNNNCTG	5 cut(s)	284, 356, 428, 503, 578
CfoI	GCGC	1 cut(s)	948
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	581, 771, 791
CspAI	ACCGGT	1 cut(s)	114
CviAII	CATG	4 cut(s)	67, 76, 612, 836
CviQI	GTAC	3 cut(s)	581, 771, 791
DdeI	CTNAG	1 cut(s)	972
DpnI	GATC	2 cut(s)	543, 660
DpnII	GATC	2 cut(s)	541, 658
Eam1104I	CTCTTC	3 cut(s)	7, 138, 813
EarI	CTCTTC	3 cut(s)	7, 138, 813
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	3 cut(s)	66, 597, 835
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	5 cut(s)	26, 97, 287, 506, 575
Eco57I	CTGAAG	3 cut(s)	333, 405, 765
Eco88I	CYCGRG	1 cut(s)	295
EcoNI	CCTNNNNNAGG	2 cut(s)	200, 744
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	815
EcoT14I	CCWWGG	3 cut(s)	66, 597, 835
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	3 cut(s)	66, 597, 835
FaeI	CATG	4 cut(s)	70, 79, 615, 839
FatI	CATG	4 cut(s)	66, 75, 611, 835
Fnu4HI	GCNGC	2 cut(s)	51, 54
FokI	GGATG	3 cut(s)	386, 668, 974
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	51, 54
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	2 cut(s)	51, 54
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	65, 762
HapII	CCGG	2 cut(s)	115, 242
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	4 cut(s)	70, 79, 615, 839
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HinfI	GANTC	3 cut(s)	491, 665, 929
HpaII	CCGG	2 cut(s)	115, 242
HphI	GGTGA	2 cut(s)	121, 230
Hpy166II	GTNNAC	2 cut(s)	26, 112
Hpy188I	TCNGA	4 cut(s)	105, 315, 352, 921
Hpy188III	TCNNGA	6 cut(s)	200, 242, 423, 498, 573, 662
Hpy8I	GTNNAC	2 cut(s)	26, 112
HpyAV	CCTTC	6 cut(s)	100, 161, 206, 519, 740, 948
HpyCH4III	ACNGT	3 cut(s)	179, 631, 925
HpyCH4V	TGCA	4 cut(s)	278, 395, 470, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 275
HpyF3I	CTNAG	1 cut(s)	972
Hsp92II	CATG	4 cut(s)	70, 79, 615, 839
HspAI	GCGC	1 cut(s)	946
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	541, 658
LmnI	GCTCC	6 cut(s)	10, 205, 281, 425, 500, 889
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	6 cut(s)	256, 382, 457, 475, 707, 709
MaeIII	GTNAC	3 cut(s)	117, 725, 778
MalI	GATC	2 cut(s)	543, 660
MboI	GATC	2 cut(s)	541, 658
MboII	GAAGA	6 cut(s)	24, 155, 176, 599, 800, 837
MfeI	CAATTG	1 cut(s)	710
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	710
MroI	TCCGGA	1 cut(s)	241
MroXI	GAANNNNTTC	2 cut(s)	195, 911
MseI	TTAA	1 cut(s)	365
MspI	CCGG	2 cut(s)	115, 242
MspR9I	CCNGG	1 cut(s)	817
MunI	CAATTG	1 cut(s)	710
Mva1269I	GAATGC	2 cut(s)	238, 310
MvaI	CCWGG	1 cut(s)	817
MwoI	GCNNNNNNNGC	2 cut(s)	62, 275
NcoI	CCATGG	2 cut(s)	66, 835
NdeII	GATC	2 cut(s)	541, 658
NlaIII	CATG	4 cut(s)	70, 79, 615, 839
NlaIV	GGNNCC	3 cut(s)	6, 289, 885
PaeR7I	CTCGAG	1 cut(s)	295
PctI	GAATGC	2 cut(s)	238, 310
PdmI	GAANNNNTTC	2 cut(s)	195, 911
PfeI	GAWTC	3 cut(s)	491, 665, 929
PflMI	CCANNNNNTGG	2 cut(s)	551, 836
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	52, 55
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	815
PspGI	CCWGG	1 cut(s)	815
PspN4I	GGNNCC	3 cut(s)	6, 289, 885
PspPI	GGNCC	5 cut(s)	26, 97, 287, 506, 575
PspPPI	RGGWCCY	1 cut(s)	575
PspXI	VCTCGAGB	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	5 cut(s)	284, 356, 428, 503, 578
RsaI	GTAC	3 cut(s)	582, 772, 792
RsaNI	GTAC	3 cut(s)	581, 771, 791
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	2 cut(s)	51, 54
Sau3AI	GATC	2 cut(s)	541, 658
Sau96I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
ScrFI	CCNGG	1 cut(s)	817
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	6 cut(s)	256, 382, 457, 475, 707, 709
SfcI	CTRYAG	2 cut(s)	276, 531
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	5 cut(s)	26, 97, 287, 506, 575
SlaI	CTCGAG	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	295, 514
SmoI	CTYRAG	2 cut(s)	295, 514
Sse9I	AATT	1 cut(s)	710
SsiI	CCGC	3 cut(s)	54, 71, 904
StyD4I	CCNGG	1 cut(s)	815
StyI	CCWWGG	3 cut(s)	66, 597, 835
TaaI	ACNGT	3 cut(s)	179, 631, 925
TaqI	TCGA	3 cut(s)	19, 84, 296
TasI	AATT	1 cut(s)	710
TatI	WGTACW	1 cut(s)	790
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	491, 665, 929
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	2 cut(s)	184, 700
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	237, 904
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	184, 700
Van91I	CCANNNNNTGG	2 cut(s)	551, 836
VpaK11BI	GGWCC	5 cut(s)	26, 97, 287, 506, 575
XagI	CCTNNNNNAGG	2 cut(s)	200, 744
XcmI	CCANNNNNNNNNTGG	3 cut(s)	73, 837, 842
XhoI	CTCGAG	1 cut(s)	295
XmnI	GAANNNNTTC	2 cut(s)	195, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.