FvH4_2g13151

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001586
Physical Location & Seq
Reverse (-)
11521517 .. 11526894
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13151.t2

Sequence Viewer

Length: 900 bp
ATGGCCTGGTCAAAACGCTGTCGTTTTTATAATTTTCCCCTCTCGCTAAAAACACGGCGTCTGGAAGTCTCTTCCTCAAGCTCAGCTCTCAAGAGTGCGCGCAGTGCAGCTCAGCTGATCCCACATATGGCTCCAAGAGTTCGGGCCAGAAAGAGGGGTCATTTGGATAGGGCTCTAAAGGCTATGGCTGCCCTTTCTTTTCCAGAGAAACTAGTCCGTGATACAGTGGATGAATTACTTGAAGTTTATGGAGGAGATCATGGATGGGGCTTTATTGAAGATGCTTCTTATTCTGTCCTTGTCGATGCTCTTCTTGAAAAACAACAAGATGGTACTGAAAAGCCGATTGCTTCTCCACAAGATCATGCAAGAAGTGAACATGGTCCTGAAACTTCAGCAGTTGTGCCTACCTGCACACCATTGAAGGTCGTGCAATCACAGACTACTCAACCTCTGAACTCTACACCACTGACTAAAATACCAGCAGCATCTGCGCTTGAGGCGGAGGCCATGGCGGCATCATCAGCGATGGAGCTCGCAAAAAAATTCCGGTTCCAATCAGTCATCTTCGAATCAGATTCACAAAACTTGGTTGATGCGATTAATGGTTCGAAGACTACACCACATTGGAGCCTCATTCCCACAATCAATCGGATCCGCCATGATTCTTGTTTCTTCAGAACCTTCTCATGGAGGTGGACTACCCGTCAAGCGAACTCGGCAGCCGATCATGTTGCCGTGCTATCCTTGAGGAAGATGTGCTCTGACATTCTATCGAGGATGGTCTTCCTTGTCCTCCGACAGCATCATGACTTGGGAAACAGAATTGGCGTTGACTGCACTGACTCTTATCATATGAGATGTCGTATCGTGTTCGTCTGCTCCAGCTCTAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

300

Amino Acids

33.41

Weight (kDa)

9.43

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 51 - 109 1.8e-18 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 419
AccII CGCG 1 cut(s) 100
AciI CCGC 3 cut(s) 503, 515, 658
AclWI GGATC 3 cut(s) 112, 649, 662
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 2 cut(s) 378, 661
AcyI GRCGYC 1 cut(s) 58
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 4 cut(s) 127, 153, 690, 891
AgsI TTSAA 4 cut(s) 242, 278, 317, 424
AhdI GACNNNNNGTC 1 cut(s) 705
AhlI ACTAGT 1 cut(s) 211
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 6 cut(s) 81, 86, 110, 115, 535, 888
AluI AGCT 6 cut(s) 81, 86, 110, 115, 535, 888
Alw21I GWGCWC 2 cut(s) 537, 764
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 3 cut(s) 112, 649, 662
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 3 cut(s) 3, 144, 507
ApeKI GCWGC 4 cut(s) 107, 188, 485, 722
ApoI RAATTY 1 cut(s) 545
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 3 cut(s) 100, 102, 496
AspS9I GGNCC 2 cut(s) 144, 383
AsuII TTCGAA 2 cut(s) 570, 611
AvaII GGWCC 1 cut(s) 383
BamHI GGATCC 1 cut(s) 654
BanII GRGCYC 2 cut(s) 175, 537
BbsI GAAGAC 2 cut(s) 620, 778
Bbv12I GWGCWC 2 cut(s) 537, 764
BbvI GCAGC 4 cut(s) 119, 175, 497, 734
BccI CCATC 4 cut(s) 258, 323, 523, 775
BceAI ACGGC 2 cut(s) 71, 722
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 211
BfaI CTAG 3 cut(s) 212, 891, 898
BfuAI ACCTGC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 5 cut(s) 108, 189, 486, 516, 723
BlpI GCTNAGC 2 cut(s) 82, 111
BlsI GCNGC 5 cut(s) 109, 190, 487, 517, 724
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 383
BmeRI GACNNNNNGTC 1 cut(s) 705
BmgT120I GGNCC 2 cut(s) 144, 383
BmiI GGNNCC 4 cut(s) 132, 554, 632, 656
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 6 cut(s) 271, 295, 497, 527, 586, 814
BpiI GAAGAC 2 cut(s) 620, 778
BpmI CTGGAG 1 cut(s) 868
Bpu1102I GCTNAGC 2 cut(s) 82, 111
Bpu14I TTCGAA 2 cut(s) 570, 611
BpuEI CTTGAG 4 cut(s) 61, 74, 518, 769
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 510
BsaWI WCCGGW 1 cut(s) 549
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 153, 690, 891
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 3 cut(s) 235, 269, 786
BseLI CCNNNNNNNGG 4 cut(s) 127, 153, 690, 891
BseMII CTCAG 2 cut(s) 96, 125
BsePI GCGCGC 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 4 cut(s) 119, 175, 497, 734
BsgI GTGCAG 3 cut(s) 126, 397, 823
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 5, 146, 509
BsiHKAI GWGCWC 2 cut(s) 537, 764
BsiSI CCGG 1 cut(s) 550
BslI CCNNNNNNNGG 4 cut(s) 127, 153, 690, 891
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 3 cut(s) 5, 146, 509
Bsp119I TTCGAA 2 cut(s) 570, 611
Bsp1286I GDGCHC 3 cut(s) 175, 537, 764
Bsp143I GATC 5 cut(s) 117, 256, 361, 654, 727
Bsp1720I GCTNAGC 2 cut(s) 82, 111
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 3 cut(s) 503, 515, 658
BspANI GGCC 3 cut(s) 5, 146, 509
BspCNI CTCAG 2 cut(s) 95, 124
BspFNI CGCG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 4 cut(s) 132, 554, 632, 656
BspMI ACCTGC 1 cut(s) 419
BspPI GGATC 3 cut(s) 112, 649, 662
BspQI GCTCTTC 1 cut(s) 315
BspT104I TTCGAA 2 cut(s) 570, 611
BssECI CCNNGG 1 cut(s) 510
BssHII GCGCGC 1 cut(s) 98
BssMI GATC 5 cut(s) 117, 256, 361, 654, 727
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 76, 315
BstACI GRCGYC 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBI TTCGAA 2 cut(s) 570, 611
BstC8I GCNNGC 2 cut(s) 100, 537
BstDEI CTNAG 2 cut(s) 82, 111
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 3 cut(s) 235, 269, 786
BstFNI CGCG 1 cut(s) 100
BstHHI GCGC 3 cut(s) 100, 102, 496
BstKTI GATC 5 cut(s) 120, 259, 364, 657, 730
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 5 cut(s) 117, 256, 361, 654, 727
BstMWI GCNNNNNNNGC 9 cut(s) 104, 179, 188, 491, 500, 515, 524, 719, 837
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 4 cut(s) 119, 175, 497, 734
BstV2I GAAGAC 2 cut(s) 620, 778
BstX2I RGATCY 1 cut(s) 654
BstYI RGATCY 1 cut(s) 654
BsuRI GGCC 3 cut(s) 5, 146, 509
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 1 cut(s) 542
BtsCI GGATG 3 cut(s) 235, 269, 786
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 4 cut(s) 109, 231, 467, 840
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 100, 537
CaiI CAGNNNCTG 1 cut(s) 491
CciI TCATGA 1 cut(s) 808
CfoI GCGC 3 cut(s) 100, 102, 496
Cfr13I GGNCC 2 cut(s) 144, 383
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 333
CviAII CATG 8 cut(s) 260, 365, 380, 511, 662, 690, 731, 809
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 82, 111
DpnI GATC 5 cut(s) 119, 258, 363, 656, 729
DpnII GATC 5 cut(s) 117, 256, 361, 654, 727
DriI GACNNNNNGTC 1 cut(s) 705
Eam1104I CTCTTC 2 cut(s) 76, 315
Eam1105I GACNNNNNGTC 1 cut(s) 705
EarI CTCTTC 2 cut(s) 76, 315
EciI GGCGGA 2 cut(s) 518, 647
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 2 cut(s) 175, 537
Eco47I GGWCC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 535
Eco57I CTGAAG 2 cut(s) 378, 661
EcoICRI GAGCTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 2 cut(s) 175, 537
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 8 cut(s) 263, 368, 383, 514, 665, 693, 734, 812
FatI CATG 8 cut(s) 259, 364, 379, 510, 661, 689, 730, 808
FauNDI CATATG 2 cut(s) 126, 855
Fnu4HI GCNGC 5 cut(s) 108, 189, 486, 516, 723
FokI GGATG 3 cut(s) 242, 276, 793
FriOI GRGCYC 2 cut(s) 175, 537
Fsp4HI GCNGC 5 cut(s) 108, 189, 486, 516, 723
FspBI CTAG 3 cut(s) 212, 891, 898
GlaI GCGC 3 cut(s) 99, 101, 495
GluI GCNGC 5 cut(s) 108, 189, 486, 516, 723
GsuI CTGGAG 1 cut(s) 868
HaeIII GGCC 3 cut(s) 5, 146, 509
HapII CCGG 1 cut(s) 550
HgaI GACGC 1 cut(s) 47
HhaI GCGC 3 cut(s) 100, 102, 496
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 8 cut(s) 263, 368, 383, 514, 665, 693, 734, 812
Hin6I GCGC 3 cut(s) 98, 100, 494
HinP1I GCGC 3 cut(s) 98, 100, 494
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 4 cut(s) 572, 578, 665, 845
HpaII CCGG 1 cut(s) 550
Hpy166II GTNNAC 3 cut(s) 377, 699, 835
Hpy188I TCNGA 6 cut(s) 456, 577, 654, 680, 766, 800
Hpy188III TCNNGA 6 cut(s) 62, 91, 203, 314, 386, 809
Hpy8I GTNNAC 3 cut(s) 377, 699, 835
HpyAV CCTTC 2 cut(s) 418, 694
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 5 cut(s) 107, 368, 414, 433, 840
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 179, 188, 491, 500, 515, 524, 719, 837
HpyF3I CTNAG 2 cut(s) 82, 111
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 8 cut(s) 263, 368, 383, 514, 665, 693, 734, 812
HspAI GCGC 3 cut(s) 98, 100, 494
Kzo9I GATC 5 cut(s) 117, 256, 361, 654, 727
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 4 cut(s) 136, 532, 630, 887
LpnPI CCDG 8 cut(s) 19, 47, 160, 216, 399, 424, 495, 563
Lsp1109I GCAGC 4 cut(s) 119, 175, 497, 734
LweI GCATC 6 cut(s) 271, 295, 497, 527, 586, 814
MaeI CTAG 3 cut(s) 212, 891, 898
MalI GATC 5 cut(s) 119, 258, 363, 656, 729
MboI GATC 5 cut(s) 117, 256, 361, 654, 727
MboII GAAGA 8 cut(s) 63, 290, 302, 559, 625, 667, 766, 778
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 3 cut(s) 175, 537, 764
MluCI AATT 4 cut(s) 31, 233, 545, 825
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 1 cut(s) 823
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 694
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 9 cut(s) 104, 179, 188, 491, 500, 515, 524, 719, 837
NcoI CCATGG 1 cut(s) 510
NdeI CATATG 2 cut(s) 126, 855
NdeII GATC 5 cut(s) 117, 256, 361, 654, 727
NlaIII CATG 8 cut(s) 263, 368, 383, 514, 665, 693, 734, 812
NlaIV GGNNCC 4 cut(s) 132, 554, 632, 656
NmeAIII GCCGAG 1 cut(s) 698
NspV TTCGAA 2 cut(s) 570, 611
PagI TCATGA 1 cut(s) 808
PauI GCGCGC 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 572, 578, 665
PkrI GCNGC 5 cut(s) 109, 190, 487, 517, 724
PleI GAGTC 1 cut(s) 839
PpsI GAGTC 1 cut(s) 839
PshBI ATTAAT 1 cut(s) 603
PsiI TTATAA 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 4 cut(s) 132, 554, 632, 656
PspPI GGNCC 2 cut(s) 144, 383
PstNI CAGNNNCTG 1 cut(s) 491
PsuI RGATCY 1 cut(s) 654
PteI GCGCGC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 694
SacI GAGCTC 1 cut(s) 537
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 5 cut(s) 108, 189, 486, 516, 723
Sau3AI GATC 5 cut(s) 117, 256, 361, 654, 727
Sau96I GGNCC 2 cut(s) 144, 383
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 3 cut(s) 175, 537, 764
SfaNI GCATC 6 cut(s) 271, 295, 497, 527, 586, 814
SfuI TTCGAA 2 cut(s) 570, 611
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 694
SmlI CTYRAG 4 cut(s) 76, 89, 497, 748
SmoI CTYRAG 4 cut(s) 76, 89, 497, 748
SpeI ACTAGT 1 cut(s) 211
Sse9I AATT 4 cut(s) 31, 233, 545, 825
SsiI CCGC 3 cut(s) 503, 515, 658
SspMI CTAG 3 cut(s) 212, 891, 898
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 4 cut(s) 303, 570, 611, 776
TasI AATT 4 cut(s) 31, 233, 545, 825
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 3 cut(s) 572, 578, 665
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 4 cut(s) 109, 231, 474, 847
TseI GCWGC 4 cut(s) 107, 188, 485, 722
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 4 cut(s) 109, 231, 474, 847
VpaK11BI GGWCC 1 cut(s) 383
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 1 cut(s) 545
XspI CTAG 3 cut(s) 212, 891, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.