Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001586

Physical Location & Seq

Genomic Coordinates Forward (+)

16268137 .. 16270649

Gene Structure 2513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTCCACGAGCACGAGGCAGAAAGAAGGACACTCGAATGGATGCAGCCATTGATGCGACGCGTGAAATGGGTTTTGACGAGAAACTCGTTCGTGCTACGGTGAATGACCTACTGAAGGTTTATAAGGGAGATAATAGGACAGAGAATCCATGGCGATTTATCGAAGAGGGTTCTTATACGCTATTAGTTGAGCAACTTCTTGAGAAAGTAGAAGCCCAAGAGGCTGCTGAAAAAAGGGATGCTGCTTCACAAGACAATAATGCTCCACAAGACGACGCCGCTATGCAAGAAGACACTGCTATGCAAGAAGGCGCTGGTATGCAAGAAGATGTTGCTATGCAAGATGATGCTGCTCCGCTAGAAGATGTTGCTTTACTAGAAGATGCTTCTCCACTAGACGATGCTGCACCACTAGATGATGCATTAGCTGCTGTGCCCTCAAACACTGCCATTCTATCTACTTGCGATAATGCTCCGCAAGATGCTGGATCAGTGGCCGGAACTGCAAGGACTGCCATTTTATCTACCTGCTCAGAGGCTGTCAACAGCACATTGCTGACTGAGGATCCTTGTGACTCTGCATCACATACTAATGGACCTATCCCGGCATCAATGATTAAAATGCCAGATGCTAAGGATGGCCTCCGAGTAGACAGTTGCCCACCCCGGAGGCCTAGACCTTACTACGGCTGGGTTTGCAGCGATGACGAGGAATATCCTGTGGAAGTGGCGTCGTCTCCATTGTCAGAGTTGGTCAAATTGCTTATTAGGCCAGATAAGAAGAAAAAGCGGAAGTCGAGATGGGACATGGGACCTGAAGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WIYLD

Protein Analysis

277

Amino Acids

30.07

Weight (kDa)

4.42

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT2G40020 AT2G40020 AT2G40020 AT2G40020
fragaria_vesca	FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_7g23100 FvH4_7g24210 FvH4_7g24210
malus_domestica	MD01G1149600.v1.1 MD17G1067400.v1.1
prunus_persica	Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1
pyrus_communis	pycom01g16760 pycom07g19830 pycom17g06770
rosa_chinensis	RchiOBHm_Chr1g0369781 RchiOBHm_Chr6g0274431
rosa_laevigata	RLG00000013543 RLG00000027106
rosa_multiflora	Rmu_sc0001154.1_g000041 Rmu_sc0001289.1_g000015 Rmu_sc0007743.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287390 Rroxscaffold_7G00194230
rosa_rugosa	Rorug01G0352100 Rorug01G0352200 Rorug01G0352300 Rorug06G0081800
rosa_samantha	Rh1AG360800 Rh1BG324500 Rh1CG337700 Rh1DG354900 Rh6AG198200 Rh6BG201500 Rh6CG202200 Rh6DG192700
rosa_wichuraiana	Rw1G031760 Rw6G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	64
AciI	CCGC	4 cut(s)	282, 359, 479, 793
AclWI	GGATC	3 cut(s)	499, 563, 576
AcoI	YGGCCR	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	2 cut(s)	279, 734
AfiI	CCNNNNNNNGG	2 cut(s)	118, 689
AflIII	ACRYGT	1 cut(s)	62
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	744
AlwI	GGATC	3 cut(s)	499, 563, 576
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	4 cut(s)	498, 643, 674, 773
ApeKI	GCWGC	7 cut(s)	47, 227, 245, 353, 407, 431, 702
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	599, 815
AsuC2I	CCSGG	2 cut(s)	608, 670
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	599, 815
BaeGI	GKGCMC	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	568
BauI	CACGAG	2 cut(s)	9, 15
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	7 cut(s)	59, 214, 232, 340, 394, 418, 714
BccI	CCATC	2 cut(s)	635, 798
BceAI	ACGGC	1 cut(s)	706
BcnI	CCSGG	2 cut(s)	608, 670
BcoDI	GTCTC	1 cut(s)	744
BfaI	CTAG	5 cut(s)	362, 380, 398, 416, 678
BfoI	RGCGCY	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	539
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	8 cut(s)	48, 228, 246, 282, 354, 408, 432, 703
BlsI	GCNGC	8 cut(s)	49, 229, 247, 283, 355, 409, 433, 704
Bme1390I	CCNGG	2 cut(s)	608, 670
Bme18I	GGWCC	2 cut(s)	599, 815
BmgT120I	GGNCC	2 cut(s)	599, 815
BmiI	GGNNCC	3 cut(s)	6, 570, 816
BmrFI	CCNGG	2 cut(s)	608, 670
BpiI	GAAGAC	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	2 cut(s)	608, 670
BsaHI	GRCGYC	2 cut(s)	279, 734
BsaJI	CCNNGG	2 cut(s)	152, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 689
Bse3DI	GCAATG	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	152, 668
BseGI	GGATG	3 cut(s)	49, 247, 646
BseLI	CCNNNNNNNGG	2 cut(s)	118, 689
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	549, 555
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	7 cut(s)	59, 214, 232, 340, 394, 418, 714
BseYI	CCCAGC	1 cut(s)	693
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	4 cut(s)	500, 645, 676, 775
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	501, 608, 670
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	2 cut(s)	118, 689
BsmAI	GTCTC	1 cut(s)	744
BsmBI	CGTCTC	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	821
BsnI	GGCC	4 cut(s)	500, 645, 676, 775
Bsp1286I	GDGCHC	2 cut(s)	16, 441
Bsp143I	GATC	2 cut(s)	491, 568
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	4 cut(s)	282, 359, 479, 793
BspANI	GGCC	4 cut(s)	500, 645, 676, 775
BspCNI	CTCAG	2 cut(s)	548, 556
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	6, 570, 816
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	3 cut(s)	499, 563, 576
BsrDI	GCAATG	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	152, 668
BssMI	GATC	2 cut(s)	491, 568
BssNI	GRCGYC	2 cut(s)	279, 734
BssSI	CACGAG	2 cut(s)	9, 15
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	2 cut(s)	9, 15
Bst4CI	ACNGT	2 cut(s)	103, 659
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	2 cut(s)	279, 734
BstAPI	GCANNNNNTGC	2 cut(s)	431, 515
BstDEI	CTNAG	3 cut(s)	535, 564, 636
BstDSI	CCRYGG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	3 cut(s)	49, 247, 646
BstFNI	CGCG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	2 cut(s)	494, 571
BstMAI	GTCTC	1 cut(s)	744
BstMBI	GATC	2 cut(s)	491, 568
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 56, 224, 431, 506, 515, 699, 772
BstSCI	CCNGG	2 cut(s)	606, 668
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	7 cut(s)	59, 214, 232, 340, 394, 418, 714
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	4 cut(s)	500, 645, 676, 775
BtgI	CCRYGG	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	49, 247, 646
BtsI	GCAGTG	2 cut(s)	297, 447
BtsIMutI	CAGTG	3 cut(s)	297, 447, 501
BveI	ACCTGC	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	599, 815
CseI	GACGC	3 cut(s)	70, 287, 723
CviAII	CATG	2 cut(s)	153, 811
DdeI	CTNAG	3 cut(s)	535, 564, 636
DpnI	GATC	2 cut(s)	493, 570
DpnII	GATC	2 cut(s)	491, 568
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	599, 815
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	815
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	744
FaeI	CATG	2 cut(s)	156, 814
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	2 cut(s)	152, 810
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	8 cut(s)	48, 228, 246, 282, 354, 408, 432, 703
FokI	GGATG	3 cut(s)	56, 254, 653
Fsp4HI	GCNGC	8 cut(s)	48, 228, 246, 282, 354, 408, 432, 703
FspBI	CTAG	5 cut(s)	362, 380, 398, 416, 678
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	8 cut(s)	48, 228, 246, 282, 354, 408, 432, 703
GsaI	CCCAGC	1 cut(s)	697
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	500, 645, 676, 775
HapII	CCGG	3 cut(s)	501, 608, 670
HgaI	GACGC	3 cut(s)	70, 287, 723
HhaI	GCGC	1 cut(s)	317
Hin1I	GRCGYC	2 cut(s)	279, 734
Hin1II	CATG	2 cut(s)	156, 814
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	2 cut(s)	148, 578
HpaII	CCGG	3 cut(s)	501, 608, 670
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	547, 655
Hpy188I	TCNGA	3 cut(s)	538, 650, 751
Hpy188III	TCNNGA	2 cut(s)	203, 801
Hpy8I	GTNNAC	2 cut(s)	547, 655
Hpy99I	CGWCG	3 cut(s)	64, 281, 739
HpyAV	CCTTC	3 cut(s)	22, 112, 305
HpyCH4III	ACNGT	2 cut(s)	103, 659
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 56, 224, 431, 506, 515, 699, 772
HpyF3I	CTNAG	3 cut(s)	535, 564, 636
Hsp92I	GRCGYC	2 cut(s)	279, 734
Hsp92II	CATG	2 cut(s)	156, 814
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	491, 568
LmnI	GCTCC	4 cut(s)	10, 271, 361, 481
Lsp1109I	GCAGC	7 cut(s)	59, 214, 232, 340, 394, 418, 714
MaeI	CTAG	5 cut(s)	362, 380, 398, 416, 678
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	2 cut(s)	493, 570
MboI	GATC	2 cut(s)	491, 568
MboII	GAAGA	6 cut(s)	179, 305, 341, 377, 395, 796
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	16, 441
MluCI	AATT	1 cut(s)	761
MluI	ACGCGT	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	9 cut(s)	11, 163, 217, 451, 532, 559, 656, 666, 706
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	3 cut(s)	38, 302, 594
MspI	CCGG	3 cut(s)	501, 608, 670
MspR9I	CCNGG	2 cut(s)	608, 670
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	8 cut(s)	11, 56, 224, 431, 506, 515, 699, 772
NciI	CCSGG	2 cut(s)	608, 670
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	491, 568
NlaIII	CATG	2 cut(s)	156, 814
NlaIV	GGNNCC	3 cut(s)	6, 570, 816
NmuCI	GTSAC	1 cut(s)	575
NsiI	ATGCAT	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	8 cut(s)	49, 229, 247, 283, 355, 409, 433, 704
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	815
PspFI	CCCAGC	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	6, 570, 816
PspPI	GGNCC	2 cut(s)	599, 815
PspPPI	RGGWCCY	1 cut(s)	815
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	568
RseI	CAYNNNNRTG	3 cut(s)	38, 302, 594
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	8 cut(s)	48, 228, 246, 282, 354, 408, 432, 703
Sau3AI	GATC	2 cut(s)	491, 568
Sau96I	GGNCC	2 cut(s)	599, 815
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	608, 670
SduI	GDGCHC	2 cut(s)	16, 441
SetI	ASST	7 cut(s)	114, 123, 433, 533, 604, 685, 820
SinI	GGWCC	2 cut(s)	599, 815
SmiMI	CAYNNNNRTG	3 cut(s)	38, 302, 594
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	761
SseBI	AGGCCT	1 cut(s)	676
SsiI	CCGC	4 cut(s)	282, 359, 479, 793
SspMI	CTAG	5 cut(s)	362, 380, 398, 416, 678
StuI	AGGCCT	1 cut(s)	676
StyD4I	CCNGG	2 cut(s)	606, 668
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	103, 659
TaqI	TCGA	3 cut(s)	37, 165, 800
TasI	AATT	1 cut(s)	761
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	3 cut(s)	304, 454, 501
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	7 cut(s)	47, 227, 245, 353, 407, 431, 702
Tsp45I	GTSAC	1 cut(s)	575
TspRI	CASTG	3 cut(s)	304, 454, 501
VpaK11BI	GGWCC	2 cut(s)	599, 815
XagI	CCTNNNNNAGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	5 cut(s)	362, 380, 398, 416, 678
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.