Rw1G031760

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001586
Physical Location & Seq
Forward (+)
59955738 .. 59958548
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031760.1

Sequence Viewer

Length: 663 bp
ATGGCTCCAAGAAGAGGTCGAGGTGGACCACCCAAGACTTCTCGTATGGCTGCCGCCGTTGAGGCCATGGCGGACATGGGTTTCGAGCCCAAACTGGTCCGTCAGAAGGTGAACCGGTTACTAAAAAAAGACCTTTATGGAGAAGAGGGCTGGCGTTTTATTGAAGAAGGTTCTTACAGTGTTCTACTTGAAGCCCTTCTGGAGGAGCAAACAGATGGTGATGAAAATGGGGTTGCTTCTGTAGAAAATGATCCAAGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGTACCCTCCTCCTCAACCAAGGTTTTTCTTCCATGCTCAAACATTGAGACTGTGAGCAGAACATTACAGAGCAAGGATGATCTGGATTCCTCATCACATAACGAACCTTTGACCACTGCATCGCCCACTCAATTGCCTGGAGAAATACAAGGCCAGCAAGGTACTCCTGTTACCCACTCTGTACAAGAAGTTGATACTCTTCCAGCCAGGAGGCGAAGACCATACCATGGTTGGGTTGGTTGTGATGATGATGATTTTGTGGAACAAACAGAGGCTCCATTGCCAGAAGTGTTGCGGAAAATGTTCATTCTGACTGTTGATTCTGGTAAGAGAAAGCGCAAGAGAAGGTGGGATGTGAAGCCTGAGAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

220

Amino Acids

24.37

Weight (kDa)

5.17

Isoelectric Point (pI)

74.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 13 - 70 4e-17 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 260, 515
AciI CCGC 3 cut(s) 54, 71, 583
AclWI GGATC 1 cut(s) 245
AfaI GTAC 3 cut(s) 291, 451, 471
AfiI CCNNNNNNNGG 6 cut(s) 14, 106, 202, 260, 515, 520
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 3 cut(s) 164, 191, 275
AjnI CCWGG 2 cut(s) 424, 494
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 2 cut(s) 63, 439
ApeKI GCWGC 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsiGI ACCGGT 1 cut(s) 114
Asp700I GAANNNNTTC 2 cut(s) 195, 590
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 3 cut(s) 26, 97, 284
AsuHPI GGTGA 2 cut(s) 121, 230
AvaII GGWCC 3 cut(s) 26, 97, 284
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 511
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 426, 496
BcoDI GTCTC 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 2 cut(s) 426, 496
Bme18I GGWCC 3 cut(s) 26, 97, 284
BmgT120I GGNCC 3 cut(s) 26, 97, 284
BmiI GGNNCC 2 cut(s) 6, 564
BmrFI CCNGG 2 cut(s) 426, 496
BmsI GCATC 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 511
BpmI CTGGAG 2 cut(s) 221, 447
BsaJI CCNNGG 3 cut(s) 66, 306, 514
BsaWI WCCGGW 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 106, 202, 260, 515, 520
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 566
BseBI CCWGG 2 cut(s) 426, 496
BseDI CCNNGG 3 cut(s) 66, 306, 514
BseGI GGATG 2 cut(s) 370, 646
BseLI CCNNNNNNNGG 6 cut(s) 14, 106, 202, 260, 515, 520
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 218, 286, 289
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 65, 441
BshTI ACCGGT 1 cut(s) 114
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 6 cut(s) 14, 106, 202, 260, 515, 520
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 2 cut(s) 65, 441
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 2 cut(s) 250, 367
Bsp19I CCATGG 2 cut(s) 66, 514
BspACI CCGC 3 cut(s) 54, 71, 583
BspANI GGCC 2 cut(s) 65, 441
BspCNI CTCAG 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 6, 564
BspPI GGATC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 114
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 66, 306, 514
BssMI GATC 2 cut(s) 250, 367
BssT1I CCWWGG 3 cut(s) 66, 306, 514
Bst2UI CCWGG 2 cut(s) 426, 496
Bst4CI ACNGT 3 cut(s) 179, 340, 604
Bst6I CTCTTC 3 cut(s) 7, 138, 492
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 152, 443
BstDEI CTNAG 1 cut(s) 651
BstDSI CCRYGG 2 cut(s) 66, 514
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 370, 646
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 2 cut(s) 253, 370
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 250, 367
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 426, 496
BstSCI CCNGG 2 cut(s) 424, 494
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 511
BsuRI GGCC 2 cut(s) 65, 441
BtgI CCRYGG 2 cut(s) 66, 514
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 370, 646
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 184, 402
Cac8I GCNNGC 2 cut(s) 152, 443
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 627
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 26, 97, 284
Csp6I GTAC 3 cut(s) 290, 450, 470
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 4 cut(s) 67, 76, 321, 515
CviQI GTAC 3 cut(s) 290, 450, 470
DdeI CTNAG 1 cut(s) 651
DpnI GATC 2 cut(s) 252, 369
DpnII GATC 2 cut(s) 250, 367
Eam1104I CTCTTC 3 cut(s) 7, 138, 492
EarI CTCTTC 3 cut(s) 7, 138, 492
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 66, 306, 514
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 3 cut(s) 26, 97, 284
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 424, 494
EcoT14I CCWWGG 3 cut(s) 66, 306, 514
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 66, 306, 514
FaeI CATG 4 cut(s) 70, 79, 324, 518
FaiI YATR 9 cut(s) 47, 68, 77, 138, 322, 387, 511, 516, 659
FatI CATG 4 cut(s) 66, 75, 320, 514
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 2 cut(s) 377, 653
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 51, 54
GlaI GCGC 1 cut(s) 626
GluI GCNGC 2 cut(s) 51, 54
GsuI CTGGAG 2 cut(s) 221, 447
HaeIII GGCC 2 cut(s) 65, 441
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 627
Hin1II CATG 4 cut(s) 70, 79, 324, 518
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HinfI GANTC 2 cut(s) 374, 608
HpaII CCGG 1 cut(s) 115
HphI GGTGA 2 cut(s) 121, 230
Hpy166II GTNNAC 2 cut(s) 26, 112
Hpy188I TCNGA 2 cut(s) 105, 600
Hpy188III TCNNGA 3 cut(s) 200, 282, 371
Hpy8I GTNNAC 2 cut(s) 26, 112
HpyAV CCTTC 4 cut(s) 100, 161, 206, 627
HpyCH4III ACNGT 3 cut(s) 179, 340, 604
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 651
Hsp92II CATG 4 cut(s) 70, 79, 324, 518
HspAI GCGC 1 cut(s) 625
Kzo9I GATC 2 cut(s) 250, 367
LmnI GCTCC 3 cut(s) 10, 205, 568
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 117, 457
MalI GATC 2 cut(s) 252, 369
MboI GATC 2 cut(s) 250, 367
MboII GAAGA 6 cut(s) 24, 155, 176, 308, 479, 516
MfeI CAATTG 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 1 cut(s) 419
MroXI GAANNNNTTC 2 cut(s) 195, 590
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 426, 496
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 2 cut(s) 426, 496
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 2 cut(s) 66, 514
NdeII GATC 2 cut(s) 250, 367
NlaIII CATG 4 cut(s) 70, 79, 324, 518
NlaIV GGNNCC 2 cut(s) 6, 564
PdmI GAANNNNTTC 2 cut(s) 195, 590
PfeI GAWTC 2 cut(s) 374, 608
PflMI CCANNNNNTGG 2 cut(s) 260, 515
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 2 cut(s) 52, 55
PpuMI RGGWCCY 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 424, 494
PspGI CCWGG 2 cut(s) 424, 494
PspN4I GGNNCC 2 cut(s) 6, 564
PspPI GGNCC 3 cut(s) 26, 97, 284
PspPPI RGGWCCY 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 287
RsaI GTAC 3 cut(s) 291, 451, 471
RsaNI GTAC 3 cut(s) 290, 450, 470
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 250, 367
Sau96I GGNCC 3 cut(s) 26, 97, 284
ScrFI CCNGG 2 cut(s) 426, 496
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 3 cut(s) 26, 97, 284
Sse9I AATT 1 cut(s) 419
SsiI CCGC 3 cut(s) 54, 71, 583
StyD4I CCNGG 2 cut(s) 424, 494
StyI CCWWGG 3 cut(s) 66, 306, 514
TaaI ACNGT 3 cut(s) 179, 340, 604
TaqI TCGA 2 cut(s) 19, 84
TasI AATT 1 cut(s) 419
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 374, 608
TscAI CASTG 2 cut(s) 184, 409
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 237, 583
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 184, 409
Van91I CCANNNNNTGG 2 cut(s) 260, 515
VpaK11BI GGWCC 3 cut(s) 26, 97, 284
XagI CCTNNNNNAGG 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 3 cut(s) 73, 516, 521
XmnI GAANNNNTTC 2 cut(s) 195, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.