Rorug06G0081800

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001586
Physical Location & Seq
Forward (+)
10889722 .. 10890449
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0081800.1

Sequence Viewer

Length: 462 bp
ATGAGCAACAACACGGAAAGTGCAAATTCTGAGCCTCTTGAGCGTGACGACGGCGCTGAGGCGGTTACCTCAATTCCCGATTCTTCTGGCATTGAGGATGCGGTGCCGCAGCTGCTGCACGTCGTCGTTTCAGAACCATCGAAGAGCAAGACGAGAATGAATCTGACGACGATGAGGATATCCCCAATAAGTTCAGTCGGTTTCTTCACGTTACAAACCCTCAAGCTCGCCGCAATTCCTTCACCTTCTTCTTCTTTACGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACACACCAAGACCTCAAGTTCCTCTCTTCTTCGTCAAGGGCTTTTTAGCCTCAGCCGTACAATCCACTGTCGCTACAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTGTGAAACCACAGTGGAAAGTGATAGATTTCAAGGGGCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

153

Amino Acids

16.47

Weight (kDa)

9.13

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AciI CCGC 4 cut(s) 62, 101, 107, 231
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 366
AgsI TTSAA 2 cut(s) 271, 448
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 2 cut(s) 112, 226
AluI AGCT 2 cut(s) 112, 226
AlwNI CAGNNNCTG 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 109, 112, 115
ApoI RAATTY 1 cut(s) 25
AspLEI GCGC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 234
BanI GGYRCC 1 cut(s) 103
BbvCI CCTCAGC 2 cut(s) 57, 358
BbvI GCAGC 3 cut(s) 99, 102, 121
BccI CCATC 1 cut(s) 145
BceAI ACGGC 2 cut(s) 67, 347
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 5 cut(s) 107, 110, 113, 116, 231
BlsI GCNGC 5 cut(s) 108, 111, 114, 117, 232
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 1 cut(s) 88
Bpu10I CCTNAGC 2 cut(s) 57, 358
BpuEI CTTGAG 3 cut(s) 59, 206, 306
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 3 cut(s) 21, 48, 372
BseXI GCAGC 3 cut(s) 99, 102, 121
BsgI GTGCAG 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 103
BspACI CCGC 4 cut(s) 62, 101, 107, 231
BspCNI CTCAG 3 cut(s) 22, 49, 371
BspLI GGNNCC 1 cut(s) 105
BspQI GCTCTTC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 376, 429
Bst6I CTCTTC 2 cut(s) 137, 338
BstAPI GCANNNNNTGC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 30, 57, 358
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 40, 112, 115, 392
BstPI GGTNACC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 99, 102, 121
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 372, 434
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 365
CviAII CATG 1 cut(s) 455
CviJI RGCY 8 cut(s) 34, 112, 226, 306, 348, 356, 362, 402
CviKI_1 RGCY 8 cut(s) 34, 112, 226, 306, 348, 356, 362, 402
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 3 cut(s) 30, 57, 358
Eam1104I CTCTTC 2 cut(s) 137, 338
EarI CTCTTC 2 cut(s) 137, 338
Eco32I GATATC 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRV GATATC 1 cut(s) 180
FaeI CATG 1 cut(s) 458
FaiI YATR 2 cut(s) 303, 456
FatI CATG 1 cut(s) 454
Fnu4HI GCNGC 5 cut(s) 107, 110, 113, 116, 231
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 5 cut(s) 107, 110, 113, 116, 231
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 107, 110, 113, 116, 231
HaeII RGCGCY 1 cut(s) 57
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 458
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 2 cut(s) 80, 160
HphI GGTGA 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 31, 133, 165
Hpy188III TCNNGA 2 cut(s) 38, 77
Hpy99I CGWCG 4 cut(s) 53, 125, 128, 172
HpyAV CCTTC 3 cut(s) 249, 255, 298
HpyCH4III ACNGT 2 cut(s) 376, 429
HpyCH4IV ACGT 2 cut(s) 120, 209
HpyCH4V TGCA 2 cut(s) 23, 118
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 112, 115, 392
HpyF3I CTNAG 3 cut(s) 30, 57, 358
HpySE526I ACGT 2 cut(s) 120, 209
Hsp92II CATG 1 cut(s) 458
HspAI GCGC 1 cut(s) 54
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 2 cut(s) 72, 417
Lsp1109I GCAGC 3 cut(s) 99, 102, 121
LweI GCATC 1 cut(s) 88
MaeII ACGT 2 cut(s) 120, 209
MaeIII GTNAC 3 cut(s) 44, 64, 210
MboII GAAGA 7 cut(s) 75, 154, 196, 240, 243, 325, 328
MluCI AATT 3 cut(s) 25, 72, 234
MspA1I CMGCKG 1 cut(s) 112
MwoI GCNNNNNNNGC 4 cut(s) 40, 112, 115, 392
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 80, 160
PkrI GCNGC 5 cut(s) 108, 111, 114, 117, 232
PspEI GGTNACC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 137
SatI GCNGC 5 cut(s) 107, 110, 113, 116, 231
SetI ASST 9 cut(s) 71, 114, 123, 212, 228, 247, 290, 322, 418
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 381
SmlI CTYRAG 3 cut(s) 38, 221, 321
SmoI CTYRAG 3 cut(s) 38, 221, 321
Sse9I AATT 3 cut(s) 25, 72, 234
SsiI CCGC 4 cut(s) 62, 101, 107, 231
TaaI ACNGT 2 cut(s) 376, 429
TaiI ACGT 2 cut(s) 123, 212
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 25, 72, 234
TauI GCSGC 2 cut(s) 109, 233
TfiI GAWTC 2 cut(s) 80, 160
TscAI CASTG 2 cut(s) 379, 434
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 3 cut(s) 109, 112, 115
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 2 cut(s) 29, 253
TspRI CASTG 2 cut(s) 379, 434
XapI RAATTY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.