Rmu_sc0007743.1_g000004

zinc metalloprotease EGY2, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007743.1
Physical Location & Seq
Forward (+)
5315 .. 13424
8110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007743.1_g000004.1.cds

Sequence Viewer

Length: 1536 bp
atggctccaagaagaggtcgaggtggaccacccaagacttctcgtatggctgccgccgttgaggccatggcggacatgggtttcgagcccaaactggtccgtcagaaggtgaaccggttactaaaaaaagacctttatggagaagagggctggcgttttattgaagaaggttcttacagtgttctacttgaagcccttctggaggagcaaacagatggtgatgaaaatgggaatgcttctccggaaaaatcaaaaggtggaaaagatgctgaaactgcaggagctggaccctcctcgagcaagaatgcttctccgaaaaaatcaacctatggaaatgacgctgaaacttcagaagctggactattaagcaaggatgtatctttacaaactgatgcaagaggtgtaaatgatactgaaacttcaggagctggactatccataatcaagtatgtgcctccacaaactgatgcaagaggtgtaaatgatgctgaatcatcaggagctggaccttcctcaagcaaggttgcttctgtagaaaatgatccaagtggtggaagtgaggttgaaacatcaggacctgtaccctcctcctcaaccaaggtttttcttccatgctcaaacattgagactgtgagcagaacattacagagcaaggatgatctggattcctcatcacataacgaacctttgaccactgcatcgcccactcaattgcctgctgaagttttgaactatagttcggcctttgataatgttgagctgttaaacaaaggcttacctggagcccttgtaactgcacttgttttgggggtgcatgagcttggccacattttagctgcaaacagcactggaatcaagcttggagtgccatactttgtccccagttggcagataggctcttttggtacaattacaagaattgtaaatattgtacccaagcgtgaagatcttctgaaagttgcagcagctggacctttagctggattttccttgggcattgttcttttgcttttagggttcatcttaccgcccagtgatggtgttggtgtcattgttgatgcttctgtgtttcatgagtcctttcttgcagggggtattgcaaagcttcttcttggtgatgcactcaaggaaggcacaccaatatctgttaatcctctcttgatatgggcatgggctggacttcttatcaatgccattaacagcattcctgccggagaactcgatgggggaagaatttcttttgccatttggggaagaaaggcttcagctcgcttcactggtttctcaatcgtgctgcttggattatcttcactaatcaatgatgtggcattctattgggtagctctgatattcttcttacagagggggccaattgctccgcttgctgaagagatcacagatcctgatgacaagtatgttgccgtaggcgtgttagttttgttcttggggttgctggtatgcttaccatacccgtttcccttcacatatgacatgaccagtttgtcaagtttctcagggttaacagatatgctctga

Protein Analysis

511

Amino Acids

53.63

Weight (kDa)

4.81

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1501
AccB7I CCANNNNNTGG 1 cut(s) 551
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 4 cut(s) 54, 71, 1028, 1379
AclWI GGATC 2 cut(s) 536, 1394
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 1 cut(s) 1233
AcuI CTGAAG 5 cut(s) 333, 405, 741, 1248, 1407
AfaI GTAC 3 cut(s) 582, 907, 933
AfiI CCNNNNNNNGG 6 cut(s) 14, 106, 202, 551, 980, 1037
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 4 cut(s) 164, 191, 566, 730
AjnI CCWGG 1 cut(s) 778
Alw26I GTCTC 1 cut(s) 620
AlwI GGATC 2 cut(s) 536, 1394
AlwNI CAGNNNCTG 7 cut(s) 284, 356, 428, 503, 578, 968, 1403
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 4 cut(s) 63, 741, 823, 1367
ApeKI GCWGC 5 cut(s) 50, 836, 962, 965, 1294
ApoI RAATTY 1 cut(s) 1233
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsiGI ACCGGT 1 cut(s) 114
Asp700I GAANNNNTTC 4 cut(s) 195, 948, 1234, 1261
AspS9I GGNCC 7 cut(s) 26, 97, 287, 506, 575, 971, 1367
AsuHPI GGTGA 3 cut(s) 121, 230, 1127
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 6 cut(s) 26, 97, 287, 506, 575, 971
BalI TGGCCA 1 cut(s) 825
BanII GRGCYC 2 cut(s) 90, 787
BbvI GCAGC 5 cut(s) 37, 823, 974, 977, 1281
BccI CCATC 3 cut(s) 209, 1031, 1217
BceAI ACGGC 2 cut(s) 41, 1406
BciT130I CCWGG 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 620
BfmI CTRYAG 3 cut(s) 276, 531, 733
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 946
BisI GCNGC 6 cut(s) 51, 54, 837, 963, 966, 1295
BlsI GCNGC 6 cut(s) 52, 55, 838, 964, 967, 1296
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 6 cut(s) 26, 97, 287, 506, 575, 971
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 7 cut(s) 26, 97, 287, 506, 575, 971, 1367
BmiI GGNNCC 4 cut(s) 6, 289, 784, 1368
BmrFI CCNGG 1 cut(s) 780
BmrI ACTGGG 2 cut(s) 876, 1026
BmsI GCATC 7 cut(s) 256, 382, 457, 475, 707, 1048, 1108
BmuI ACTGGG 2 cut(s) 876, 1026
BpmI CTGGAG 2 cut(s) 221, 801
BpuEI CTTGAG 2 cut(s) 499, 1109
BsaJI CCNNGG 3 cut(s) 66, 597, 990
BsaWI WCCGGW 2 cut(s) 114, 241
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 106, 202, 551, 980, 1037
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 6 cut(s) 99, 853, 882, 1032, 1282, 1497
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 3 cut(s) 66, 597, 990
BseGI GGATG 2 cut(s) 379, 661
BseLI CCNNNNNNNGG 6 cut(s) 14, 106, 202, 551, 980, 1037
BseMII CTCAG 1 cut(s) 1527
BseNI ACTGG 6 cut(s) 99, 853, 882, 1032, 1282, 1497
BseRI GAGGAG 4 cut(s) 218, 283, 577, 580
BseXI GCAGC 5 cut(s) 37, 823, 974, 977, 1281
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 4 cut(s) 65, 743, 825, 1369
BshTI ACCGGT 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 115, 242, 1212
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 6 cut(s) 14, 106, 202, 551, 980, 1037
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 863
BsmI GAATGC 4 cut(s) 238, 310, 1203, 1328
BsnI GGCC 4 cut(s) 65, 743, 825, 1369
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 90, 787
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 5 cut(s) 541, 658, 946, 1392, 1399
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 4 cut(s) 54, 71, 1028, 1379
BspANI GGCC 4 cut(s) 65, 743, 825, 1369
BspCNI CTCAG 1 cut(s) 1526
BspEI TCCGGA 1 cut(s) 241
BspHI TCATGA 1 cut(s) 1072
BspLI GGNNCC 4 cut(s) 6, 289, 784, 1368
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 2 cut(s) 536, 1394
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 6 cut(s) 99, 853, 882, 1032, 1282, 1497
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 66, 597, 990
BssMI GATC 5 cut(s) 541, 658, 946, 1392, 1399
BssT1I CCWWGG 3 cut(s) 66, 597, 990
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 2 cut(s) 179, 631
Bst6I CTCTTC 3 cut(s) 7, 138, 1383
BstC8I GCNNGC 4 cut(s) 152, 717, 1270, 1383
BstDEI CTNAG 1 cut(s) 1513
BstDSI CCRYGG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 379, 661
BstKTI GATC 5 cut(s) 544, 661, 949, 1395, 1402
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 5 cut(s) 541, 658, 946, 1392, 1399
BstMWI GCNNNNNNNGC 4 cut(s) 62, 275, 865, 1382
BstNI CCWGG 1 cut(s) 780
BstSCI CCNGG 1 cut(s) 778
BstSFI CTRYAG 3 cut(s) 276, 531, 733
BstV1I GCAGC 5 cut(s) 37, 823, 974, 977, 1281
BstX2I RGATCY 2 cut(s) 946, 1399
BstYI RGATCY 2 cut(s) 946, 1399
BsuRI GGCC 4 cut(s) 65, 743, 825, 1369
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 2 cut(s) 379, 661
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 5 cut(s) 184, 693, 846, 1039, 1275
Cac8I GCNNGC 4 cut(s) 152, 717, 1270, 1383
CaiI CAGNNNCTG 7 cut(s) 284, 356, 428, 503, 578, 968, 1403
CciI TCATGA 1 cut(s) 1072
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 7 cut(s) 26, 97, 287, 506, 575, 971, 1367
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 581, 906, 932
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 7 cut(s) 67, 76, 612, 815, 1073, 1170, 1492
CviQI GTAC 3 cut(s) 581, 906, 932
DdeI CTNAG 1 cut(s) 1513
DpnI GATC 5 cut(s) 543, 660, 948, 1394, 1401
DpnII GATC 5 cut(s) 541, 658, 946, 1392, 1399
DrdI GACNNNNNNGTC 1 cut(s) 1501
DseDI GACNNNNNNGTC 1 cut(s) 1501
EaeI YGGCCR 1 cut(s) 823
Eam1104I CTCTTC 3 cut(s) 7, 138, 1383
EarI CTCTTC 3 cut(s) 7, 138, 1383
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 66, 597, 990
Eco24I GRGCYC 2 cut(s) 90, 787
Eco47I GGWCC 6 cut(s) 26, 97, 287, 506, 575, 971
Eco57I CTGAAG 5 cut(s) 333, 405, 741, 1248, 1407
Eco88I CYCGRG 1 cut(s) 295
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 3 cut(s) 66, 597, 990
EcoT38I GRGCYC 2 cut(s) 90, 787
ErhI CCWWGG 3 cut(s) 66, 597, 990
FaeI CATG 7 cut(s) 70, 79, 615, 818, 1076, 1173, 1495
FalI AAGNNNNNCTT 4 cut(s) 1222, 1254, 1246, 1278
FaqI GGGAC 1 cut(s) 863
FatI CATG 7 cut(s) 66, 75, 611, 814, 1072, 1169, 1491
FauNDI CATATG 1 cut(s) 1486
Fnu4HI GCNGC 6 cut(s) 51, 54, 837, 963, 966, 1295
FokI GGATG 2 cut(s) 386, 668
FriOI GRGCYC 2 cut(s) 90, 787
Fsp4HI GCNGC 6 cut(s) 51, 54, 837, 963, 966, 1295
GluI GCNGC 6 cut(s) 51, 54, 837, 963, 966, 1295
GsuI CTGGAG 2 cut(s) 221, 801
HaeIII GGCC 4 cut(s) 65, 743, 825, 1369
HapII CCGG 3 cut(s) 115, 242, 1212
HgaI GACGC 1 cut(s) 347
Hin1II CATG 7 cut(s) 70, 79, 615, 818, 1076, 1173, 1495
HincII GTYRAC 1 cut(s) 1521
HindII GTYRAC 1 cut(s) 1521
HindIII AAGCTT 2 cut(s) 857, 1103
HinfI GANTC 4 cut(s) 491, 665, 852, 1076
HpaI GTTAAC 1 cut(s) 1521
HpaII CCGG 3 cut(s) 115, 242, 1212
HphI GGTGA 3 cut(s) 121, 230, 1127
Hpy166II GTNNAC 3 cut(s) 26, 112, 1521
Hpy188I TCNGA 6 cut(s) 105, 315, 352, 954, 1347, 1535
Hpy188III TCNNGA 9 cut(s) 200, 242, 423, 498, 573, 662, 1073, 1159, 1403
Hpy8I GTNNAC 3 cut(s) 26, 112, 1521
HpyAV CCTTC 6 cut(s) 100, 161, 206, 519, 1124, 1489
HpyCH4III ACNGT 2 cut(s) 179, 631
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 275, 865, 1382
HpyF3I CTNAG 1 cut(s) 1513
Hsp92II CATG 7 cut(s) 70, 79, 615, 818, 1076, 1173, 1495
Kpn2I TCCGGA 1 cut(s) 241
KspAI GTTAAC 1 cut(s) 1521
Kzo9I GATC 5 cut(s) 541, 658, 946, 1392, 1399
LmnI GCTCC 7 cut(s) 10, 205, 281, 425, 500, 782, 1381
Lsp1109I GCAGC 5 cut(s) 37, 823, 974, 977, 1281
LweI GCATC 7 cut(s) 256, 382, 457, 475, 707, 1048, 1108
MaeIII GTNAC 2 cut(s) 117, 790
MalI GATC 5 cut(s) 543, 660, 948, 1394, 1401
MboI GATC 5 cut(s) 541, 658, 946, 1392, 1399
MfeI CAATTG 2 cut(s) 710, 1371
MflI RGATCY 2 cut(s) 946, 1399
MhlI GDGCHC 2 cut(s) 90, 787
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 5 cut(s) 710, 909, 918, 1233, 1371
MluNI TGGCCA 1 cut(s) 825
MlyI GAGTC 1 cut(s) 1085
Mox20I TGGCCA 1 cut(s) 825
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 4 cut(s) 195, 948, 1234, 1261
MscI TGGCCA 1 cut(s) 825
MseI TTAA 5 cut(s) 365, 764, 1149, 1197, 1520
Msp20I TGGCCA 1 cut(s) 825
MspA1I CMGCKG 1 cut(s) 968
MspI CCGG 3 cut(s) 115, 242, 1212
MspR9I CCNGG 1 cut(s) 780
MunI CAATTG 2 cut(s) 710, 1371
Mva1269I GAATGC 4 cut(s) 238, 310, 1203, 1328
MvaI CCWGG 1 cut(s) 780
MwoI GCNNNNNNNGC 4 cut(s) 62, 275, 865, 1382
NcoI CCATGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 1486
NdeII GATC 5 cut(s) 541, 658, 946, 1392, 1399
NlaIII CATG 7 cut(s) 70, 79, 615, 818, 1076, 1173, 1495
NlaIV GGNNCC 4 cut(s) 6, 289, 784, 1368
PaeR7I CTCGAG 1 cut(s) 295
PagI TCATGA 1 cut(s) 1072
PctI GAATGC 4 cut(s) 238, 310, 1203, 1328
PdmI GAANNNNTTC 4 cut(s) 195, 948, 1234, 1261
PfeI GAWTC 3 cut(s) 491, 665, 852
PflMI CCANNNNNTGG 1 cut(s) 551
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 6 cut(s) 52, 55, 838, 964, 967, 1296
PleI GAGTC 1 cut(s) 1084
PpsI GAGTC 1 cut(s) 1084
PpuMI RGGWCCY 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 4 cut(s) 6, 289, 784, 1368
PspPI GGNCC 7 cut(s) 26, 97, 287, 506, 575, 971, 1367
PspPPI RGGWCCY 1 cut(s) 575
PspXI VCTCGAGB 1 cut(s) 295
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 7 cut(s) 284, 356, 428, 503, 578, 968, 1403
PsuI RGATCY 2 cut(s) 946, 1399
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 3 cut(s) 582, 907, 933
RsaNI GTAC 3 cut(s) 581, 906, 932
SaqAI TTAA 5 cut(s) 365, 764, 1149, 1197, 1520
SatI GCNGC 6 cut(s) 51, 54, 837, 963, 966, 1295
Sau3AI GATC 5 cut(s) 541, 658, 946, 1392, 1399
Sau96I GGNCC 7 cut(s) 26, 97, 287, 506, 575, 971, 1367
SchI GAGTC 1 cut(s) 1085
ScrFI CCNGG 1 cut(s) 780
SduI GDGCHC 2 cut(s) 90, 787
SfaNI GCATC 7 cut(s) 256, 382, 457, 475, 707, 1048, 1108
SfcI CTRYAG 3 cut(s) 276, 531, 733
Sfr274I CTCGAG 1 cut(s) 295
SinI GGWCC 6 cut(s) 26, 97, 287, 506, 575, 971
SlaI CTCGAG 1 cut(s) 295
SmlI CTYRAG 3 cut(s) 295, 514, 1124
SmoI CTYRAG 3 cut(s) 295, 514, 1124
Sse9I AATT 5 cut(s) 710, 909, 918, 1233, 1371
SsiI CCGC 4 cut(s) 54, 71, 1028, 1379
SspI AATATT 1 cut(s) 928
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 3 cut(s) 66, 597, 990
TaaI ACNGT 2 cut(s) 179, 631
TaqI TCGA 4 cut(s) 19, 84, 296, 1221
TasI AATT 5 cut(s) 710, 909, 918, 1233, 1371
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 3 cut(s) 491, 665, 852
Tru1I TTAA 5 cut(s) 365, 764, 1149, 1197, 1520
Tru9I TTAA 5 cut(s) 365, 764, 1149, 1197, 1520
TscAI CASTG 5 cut(s) 184, 700, 853, 1039, 1282
TseI GCWGC 5 cut(s) 50, 836, 962, 965, 1294
TspDTI ATGAA 3 cut(s) 237, 1009, 1061
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 5 cut(s) 184, 700, 853, 1039, 1282
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 6 cut(s) 26, 97, 287, 506, 575, 971
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 1233
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 295
XmnI GAANNNNTTC 4 cut(s) 195, 948, 1234, 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.