Rh1CG337700

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001586
Physical Location & Seq
Forward (+)
61185504 .. 61188335
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG337700.1

Sequence Viewer

Length: 732 bp
ATGGCTCCAAGAAGAGGTCGAGGTGGACCACCCAAGACTTCTCGTATGGCTGCCGCCGTTGAGGCCATGGCGGACATGGGTTTCGAGCCCAAACTCGTCCGTCAGAAGGTGAACCGGTTACTAAAAAAAGACCTTTATGGAGAAGAGGGCTGGCGTTTTATTGAAGAAGGTTCTTACAGTGTACTACTTGAAGCCCTTCTGGAGGAGCAAACAGATGGTGATGAAAATGGGAATGCTTCTCCGGAAAAATCAAAAGGTGGAAAAGATGCTGAAACTGCAGGAGCTGGACCCTCCTCGAGCAAGAATGCTTCTCCGAAAAAATCAACCTGTGGAAATGACGCTGAAACTTCAGAAGCTGGACTATTAACCAAGGATGTATCTTTACAAACTGATGCAAGAGGTGTAAATGATACTGAAACTTCAGGAGCTGGACTATCCATAATCAAGGATGTGTCTCCACAAACTGATGCAAGAGGTGTAAATGATGCTGAATCATCAGGAGCTGGACCTTCCTCAAGCAAGGTTGCTTCTGTAGAAAATGATCCAAGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGTACCCTCCTCCTTAACCAAGGTTTTTCTTCCATGCTCAAACCTTGAGACTGTGAGCAGAACATTACAGAGCAAGGATGATCTGGATTCCTCATCACATAACGAACCTTTGACCACTGCATCGCCCACTCAATTGCCTGGTAAAATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

243

Amino Acids

25.25

Weight (kDa)

4.79

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 13 - 70 4.8e-17 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 551
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 2 cut(s) 54, 71
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 1 cut(s) 723
AcuI CTGAAG 2 cut(s) 333, 405
AfaI GTAC 2 cut(s) 183, 582
AfiI CCNNNNNNNGG 4 cut(s) 14, 106, 202, 551
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 3 cut(s) 164, 191, 566
AjnI CCWGG 1 cut(s) 715
AluBI AGCT 4 cut(s) 284, 356, 428, 503
AluI AGCT 4 cut(s) 284, 356, 428, 503
Alw26I GTCTC 2 cut(s) 459, 620
AlwI GGATC 1 cut(s) 536
AlwNI CAGNNNCTG 5 cut(s) 284, 356, 428, 503, 578
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 723
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsiGI ACCGGT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 4 cut(s) 26, 287, 506, 575
AsuHPI GGTGA 2 cut(s) 121, 230
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 4 cut(s) 26, 287, 506, 575
BanII GRGCYC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 717
BcoDI GTCTC 2 cut(s) 459, 620
BfmI CTRYAG 2 cut(s) 276, 531
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 717
Bme18I GGWCC 4 cut(s) 26, 287, 506, 575
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 4 cut(s) 26, 287, 506, 575
BmiI GGNNCC 2 cut(s) 6, 289
BmrFI CCNGG 1 cut(s) 717
BmsI GCATC 5 cut(s) 256, 382, 457, 475, 707
BpmI CTGGAG 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 499, 644
BsaJI CCNNGG 3 cut(s) 66, 369, 597
BsaWI WCCGGW 2 cut(s) 114, 241
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 106, 202, 551
Bse118I RCCGGY 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 3 cut(s) 66, 369, 597
BseGI GGATG 3 cut(s) 379, 454, 661
BseLI CCNNNNNNNGG 4 cut(s) 14, 106, 202, 551
BseRI GAGGAG 3 cut(s) 218, 283, 577
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 2 cut(s) 115, 242
BslI CCNNNNNNNGG 4 cut(s) 14, 106, 202, 551
BsmAI GTCTC 2 cut(s) 459, 620
BsmI GAATGC 2 cut(s) 238, 310
BsnI GGCC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 90
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 541, 658
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 54, 71
BspANI GGCC 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 6, 289
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 66, 369, 597
BssMI GATC 2 cut(s) 541, 658
BssT1I CCWWGG 3 cut(s) 66, 369, 597
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 2 cut(s) 179, 631
Bst6I CTCTTC 2 cut(s) 7, 138
BstC8I GCNNGC 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 3 cut(s) 379, 454, 661
BstKTI GATC 2 cut(s) 544, 661
BstMAI GTCTC 2 cut(s) 459, 620
BstMBI GATC 2 cut(s) 541, 658
BstMWI GCNNNNNNNGC 2 cut(s) 62, 275
BstNI CCWGG 1 cut(s) 717
BstSCI CCNGG 1 cut(s) 715
BstSFI CTRYAG 2 cut(s) 276, 531
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 3 cut(s) 379, 454, 661
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 2 cut(s) 184, 693
Cac8I GCNNGC 1 cut(s) 152
CaiI CAGNNNCTG 5 cut(s) 284, 356, 428, 503, 578
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 4 cut(s) 26, 287, 506, 575
CseI GACGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 182, 581
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 3 cut(s) 67, 76, 612
CviQI GTAC 2 cut(s) 182, 581
DpnI GATC 2 cut(s) 543, 660
DpnII GATC 2 cut(s) 541, 658
Eam1104I CTCTTC 2 cut(s) 7, 138
EarI CTCTTC 2 cut(s) 7, 138
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 66, 369, 597
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 4 cut(s) 26, 287, 506, 575
Eco57I CTGAAG 2 cut(s) 333, 405
Eco88I CYCGRG 1 cut(s) 295
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 715
EcoT14I CCWWGG 3 cut(s) 66, 369, 597
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 66, 369, 597
FaeI CATG 3 cut(s) 70, 79, 615
FaiI YATR 7 cut(s) 47, 68, 77, 138, 440, 613, 678
FatI CATG 3 cut(s) 66, 75, 611
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 3 cut(s) 386, 461, 668
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 51, 54
GluI GCNGC 2 cut(s) 51, 54
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 115, 242
HgaI GACGC 1 cut(s) 347
Hin1II CATG 3 cut(s) 70, 79, 615
HinfI GANTC 2 cut(s) 491, 665
HpaII CCGG 2 cut(s) 115, 242
HphI GGTGA 2 cut(s) 121, 230
Hpy166II GTNNAC 3 cut(s) 26, 112, 182
Hpy188I TCNGA 3 cut(s) 105, 315, 352
Hpy188III TCNNGA 6 cut(s) 200, 242, 423, 498, 573, 662
Hpy8I GTNNAC 3 cut(s) 26, 112, 182
HpyAV CCTTC 4 cut(s) 100, 161, 206, 519
HpyCH4III ACNGT 2 cut(s) 179, 631
HpyCH4V TGCA 4 cut(s) 278, 395, 470, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 275
Hsp92II CATG 3 cut(s) 70, 79, 615
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 541, 658
LmnI GCTCC 5 cut(s) 10, 205, 281, 425, 500
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 5 cut(s) 256, 382, 457, 475, 707
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 543, 660
MboI GATC 2 cut(s) 541, 658
MboII GAAGA 4 cut(s) 24, 155, 176, 599
MfeI CAATTG 1 cut(s) 710
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 2 cut(s) 710, 723
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 2 cut(s) 365, 593
MspI CCGG 2 cut(s) 115, 242
MspR9I CCNGG 1 cut(s) 717
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 2 cut(s) 238, 310
MvaI CCWGG 1 cut(s) 717
MwoI GCNNNNNNNGC 2 cut(s) 62, 275
NcoI CCATGG 1 cut(s) 66
NdeII GATC 2 cut(s) 541, 658
NlaIII CATG 3 cut(s) 70, 79, 615
NlaIV GGNNCC 2 cut(s) 6, 289
PaeR7I CTCGAG 1 cut(s) 295
PctI GAATGC 2 cut(s) 238, 310
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 491, 665
PflMI CCANNNNNTGG 1 cut(s) 551
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 2 cut(s) 52, 55
PpuMI RGGWCCY 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 715
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 2 cut(s) 6, 289
PspPI GGNCC 4 cut(s) 26, 287, 506, 575
PspPPI RGGWCCY 1 cut(s) 575
PspXI VCTCGAGB 1 cut(s) 295
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 5 cut(s) 284, 356, 428, 503, 578
RsaI GTAC 2 cut(s) 183, 582
RsaNI GTAC 2 cut(s) 182, 581
SaqAI TTAA 2 cut(s) 365, 593
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 541, 658
Sau96I GGNCC 4 cut(s) 26, 287, 506, 575
ScrFI CCNGG 1 cut(s) 717
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 5 cut(s) 256, 382, 457, 475, 707
SfcI CTRYAG 2 cut(s) 276, 531
Sfr274I CTCGAG 1 cut(s) 295
SinI GGWCC 4 cut(s) 26, 287, 506, 575
SlaI CTCGAG 1 cut(s) 295
SmlI CTYRAG 3 cut(s) 295, 514, 623
SmoI CTYRAG 3 cut(s) 295, 514, 623
Sse9I AATT 2 cut(s) 710, 723
SsiI CCGC 2 cut(s) 54, 71
StyD4I CCNGG 1 cut(s) 715
StyI CCWWGG 3 cut(s) 66, 369, 597
TaaI ACNGT 2 cut(s) 179, 631
TaqI TCGA 3 cut(s) 19, 84, 296
TasI AATT 2 cut(s) 710, 723
TatI WGTACW 1 cut(s) 181
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 491, 665
Tru1I TTAA 2 cut(s) 365, 593
Tru9I TTAA 2 cut(s) 365, 593
TscAI CASTG 2 cut(s) 184, 700
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 184, 700
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 4 cut(s) 26, 287, 506, 575
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.