RLG00000013543

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001586
Physical Location & Seq
Forward (+)
32920246 .. 32923152
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013543

Sequence Viewer

Length: 561 bp
ATGGCTCCAAGAGGTCGGCCCAGAAAGAGGGGTAATCCTCATTTGGATGCAGCTCTTAAGGCTATGGCTGCCCTTACTTTTCCAGAGAAACTAGTGCGTGATACAGTGGATGAATTACTTGAAGTTTATGGGGGAGATGATGGATGGGGCTTTATTAAAGACGCTTCTTATTCTGTCCTTATCGATACTCTTCTCGAAAAACAACAAGATGGCATTGAAAAGCGGATTGCTTCTCCACAAGATCATGCAAGAAGTGAACATGGTACTGAAACTTCAGCTGTTCTGCCTTCCTCAAGCAGGGTTAGTTCACCTACCTGCACACCAATGGAGGTTGTGCAATCACAGACTAATCAACCTCTGAACTCTGCACCACTGACTCAAATGCCAGATTCTAAGGATTGTCTTCCATCCAAGAGGCATAGACCATATCACGGTTGGATAGGCAATGATGATGAGGATCTTGTTCTTGTGGAACTCACACCAGCTCCATTGCTACAAGGGCTGAAACTTCTTTTTTGTGTAATGGGAAGTGAATCTGCAGGACAAGGTGGAAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

187

Amino Acids

20.25

Weight (kDa)

5.34

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 9 - 69 2e-18 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AciI CCGC 1 cut(s) 223
AclWI GGATC 1 cut(s) 465
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 3 cut(s) 27, 297, 431
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 122, 218
AhlI ACTAGT 1 cut(s) 91
AluBI AGCT 3 cut(s) 53, 278, 485
AluI AGCT 3 cut(s) 53, 278, 485
AlwI GGATC 1 cut(s) 465
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 50, 68
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 55, 62
BccI CCATC 4 cut(s) 134, 138, 203, 415
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 2 cut(s) 51, 69
BlsI GCNGC 2 cut(s) 52, 70
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 297, 431
Bse3DI GCAATG 2 cut(s) 451, 488
Bse8I GATNNNNATC 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 4 cut(s) 52, 115, 149, 407
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 27, 297, 431
BseMI GCAATG 2 cut(s) 451, 488
BseXI GCAGC 2 cut(s) 55, 62
BsgI GTGCAG 2 cut(s) 301, 351
BshFI GGCC 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 27, 297, 431
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 241, 457
BspACI CCGC 1 cut(s) 223
BspANI GGCC 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 541
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 451, 488
BssMI GATC 2 cut(s) 241, 457
Bst4CI ACNGT 2 cut(s) 106, 434
Bst6I CTCTTC 1 cut(s) 195
BstAFI CTTAAG 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 4 cut(s) 52, 115, 149, 407
BstKTI GATC 2 cut(s) 244, 460
BstMBI GATC 2 cut(s) 241, 457
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 499
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 55, 62
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 4 cut(s) 52, 115, 149, 407
BtsIMutI CAGTG 2 cut(s) 111, 371
BveI ACCTGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 264
CviAII CATG 2 cut(s) 245, 260
CviJI RGCY 9 cut(s) 5, 19, 53, 62, 68, 150, 278, 485, 502
CviKI_1 RGCY 9 cut(s) 5, 19, 53, 62, 68, 150, 278, 485, 502
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 243, 459
DpnII GATC 2 cut(s) 241, 457
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 258
EcoNI CCTNNNNNAGG 1 cut(s) 295
FaeI CATG 2 cut(s) 248, 263
FaiI YATR 7 cut(s) 65, 129, 246, 261, 420, 427, 557
FatI CATG 2 cut(s) 244, 259
Fnu4HI GCNGC 2 cut(s) 51, 69
FokI GGATG 4 cut(s) 59, 122, 156, 394
Fsp4HI GCNGC 2 cut(s) 51, 69
FspBI CTAG 1 cut(s) 92
GluI GCNGC 2 cut(s) 51, 69
HaeIII GGCC 1 cut(s) 19
HgaI GACGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 248, 263
HinfI GANTC 3 cut(s) 376, 389, 533
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 2 cut(s) 257, 308
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 2 cut(s) 83, 194
Hpy8I GTNNAC 2 cut(s) 257, 308
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 2 cut(s) 106, 434
HpyCH4V TGCA 6 cut(s) 50, 248, 318, 337, 368, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 499
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 2 cut(s) 248, 263
Kzo9I GATC 2 cut(s) 241, 457
LmnI GCTCC 2 cut(s) 10, 490
LpnPI CCDG 7 cut(s) 34, 96, 283, 328, 399, 495, 525
Lsp1109I GCAGC 2 cut(s) 55, 62
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 92
MalI GATC 2 cut(s) 243, 459
MboI GATC 2 cut(s) 241, 457
MboII GAAGA 2 cut(s) 182, 395
MflI RGATCY 1 cut(s) 457
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 8 cut(s) 5, 21, 48, 301, 322, 366, 408, 448
MseI TTAA 2 cut(s) 57, 156
MslI CAYNNNNRTG 2 cut(s) 45, 323
MspA1I CMGCKG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 499
NdeII GATC 2 cut(s) 241, 457
NlaIII CATG 2 cut(s) 248, 263
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 389, 533
PkrI GCNGC 2 cut(s) 52, 70
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 2 cut(s) 45, 323
SaqAI TTAA 2 cut(s) 57, 156
SatI GCNGC 2 cut(s) 51, 69
Sau3AI GATC 2 cut(s) 241, 457
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 370
SetI ASST 9 cut(s) 16, 55, 280, 313, 317, 333, 358, 487, 550
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 45, 323
SmlI CTYRAG 2 cut(s) 56, 292
SmoI CTYRAG 2 cut(s) 56, 292
SpeI ACTAGT 1 cut(s) 91
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 106, 434
TaqI TCGA 2 cut(s) 183, 195
TasI AATT 1 cut(s) 113
TfiI GAWTC 2 cut(s) 389, 533
Tru1I TTAA 2 cut(s) 57, 156
Tru9I TTAA 2 cut(s) 57, 156
TscAI CASTG 2 cut(s) 111, 378
TseI GCWGC 2 cut(s) 50, 68
TspDTI ATGAA 1 cut(s) 126
TspRI CASTG 2 cut(s) 111, 378
Vha464I CTTAAG 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.