Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001586

Physical Location & Seq

Genomic Coordinates Forward (+)

16710929 .. 16713339

Gene Structure 2411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCGAGAGGATGCAGCACGAGATCGCATGAGAGGATTTGGGTTTCATGAGCATGTTATCAGTGAGAGTATTAAGGAACTGTTAGAGGTCTACGAAGACCAATGGTTTTTGATTGAAGATGATAGCTATGGTCCCCTCCTTGCTATCTGCCTTGAAAAGCAAGAGGAAAAAGAGAAACAATTGGCTGAAGTACAAGCCAACCAATTGCCTGAGAATCACAATGAAGAGATGGCTGAGGAAGAACAACCCAATCAATTGGCTGTGGAAATACACGAAGAAGAGAAGGAGCAGGAGCAGGACATGCATATTGAGTATGGAAGAGACCAAGCTGATGAGTTATCAATCAATAGCGAAGCAGTCAATGACCCATCACCAGCAGCTATTCATTTGGGAGAAGCATCATCAGATTATGCACAAAGTTCTGTTCGAGGTGTGGAGAATCTTCATTGTGGATGGCTAATTGATGAGGAGGAGACGGATCCTGAGGAGGAAACGGATCCAGAGGAGAAGGAGACCGAGCCAGAGGATCCAAAGGAGAAGGAGACGGAGCCAGAGGAGGATAGTGATGGTGATGATGATGAGATCATTCAGCTTACTCCAGAACCTCTTTGTGAAGAACTTCAAGAGCTTCTCAGGGAAGTACGTGGACAGAAGAGGAGGAAGAAAGAGATGAGGTGGGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

228

Amino Acids

26.6

Weight (kDa)

4.19

Isoelectric Point (pI)

80.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	8 - 68	9.5e-22	Ubiquitin-binding WIYLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT2G40020 AT2G40020 AT2G40020 AT2G40020
fragaria_vesca	FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_7g23100 FvH4_7g24210 FvH4_7g24210
malus_domestica	MD01G1149600.v1.1 MD17G1067400.v1.1
prunus_persica	Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1
pyrus_communis	pycom01g16760 pycom07g19830 pycom17g06770
rosa_chinensis	RchiOBHm_Chr1g0369781 RchiOBHm_Chr6g0274431
rosa_laevigata	RLG00000013543 RLG00000027106
rosa_multiflora	Rmu_sc0001154.1_g000041 Rmu_sc0001289.1_g000015 Rmu_sc0007743.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287390 Rroxscaffold_7G00194230
rosa_rugosa	Rorug01G0352100 Rorug01G0352200 Rorug01G0352300 Rorug06G0081800
rosa_samantha	Rh1AG360800 Rh1BG324500 Rh1CG337700 Rh1DG354900 Rh6AG198200 Rh6BG201500 Rh6CG202200 Rh6DG192700
rosa_wichuraiana	Rw1G031760 Rw6G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AclWI	GGATC	6 cut(s)	473, 486, 491, 504, 521, 534
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	192, 642
AgsI	TTSAA	3 cut(s)	116, 155, 623
AluBI	AGCT	5 cut(s)	126, 329, 380, 592, 628
AluI	AGCT	5 cut(s)	126, 329, 380, 592, 628
Alw26I	GTCTC	4 cut(s)	315, 467, 506, 536
AlwI	GGATC	6 cut(s)	473, 486, 491, 504, 521, 534
ApeKI	GCWGC	2 cut(s)	14, 377
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	363, 581
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	483
BamHI	GGATCC	3 cut(s)	478, 496, 526
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	26, 389
BccI	CCATC	4 cut(s)	223, 376, 447, 560
BcoDI	GTCTC	4 cut(s)	315, 467, 506, 536
BisI	GCNGC	2 cut(s)	15, 378
BlsI	GCNGC	2 cut(s)	16, 379
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	5 cut(s)	133, 480, 498, 528, 549
BmsI	GCATC	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	644
BsaI	GGTCTC	2 cut(s)	315, 506
Bse21I	CCTNAGG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	16, 458
BseMII	CTCAG	4 cut(s)	201, 225, 474, 646
BseRI	GAGGAG	6 cut(s)	482, 485, 500, 518, 569, 670
BseXI	GCAGC	2 cut(s)	26, 389
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	4 cut(s)	315, 467, 506, 536
BsmBI	CGTCTC	2 cut(s)	467, 536
BsmFI	GGGAC	1 cut(s)	117
Bso31I	GGTCTC	2 cut(s)	315, 506
Bsp143I	GATC	5 cut(s)	22, 478, 496, 526, 582
BspCNI	CTCAG	4 cut(s)	202, 226, 475, 645
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	5 cut(s)	133, 480, 498, 528, 549
BspPI	GGATC	6 cut(s)	473, 486, 491, 504, 521, 534
BspTNI	GGTCTC	2 cut(s)	315, 506
BssMI	GATC	5 cut(s)	22, 478, 496, 526, 582
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	4 cut(s)	219, 273, 313, 647
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	644
BstDEI	CTNAG	4 cut(s)	210, 234, 483, 632
BstF5I	GGATG	2 cut(s)	16, 458
BstKTI	GATC	5 cut(s)	25, 481, 499, 529, 585
BstMAI	GTCTC	4 cut(s)	315, 467, 506, 536
BstMBI	GATC	5 cut(s)	22, 478, 496, 526, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNSI	RCATGY	2 cut(s)	56, 304
BstV1I	GCAGC	2 cut(s)	26, 389
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	3 cut(s)	478, 496, 526
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	3 cut(s)	478, 496, 526
Bsu36I	CCTNAGG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	16, 458
BtsIMutI	CAGTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	191, 641
CviAII	CATG	4 cut(s)	28, 47, 53, 301
CviQI	GTAC	2 cut(s)	191, 641
DdeI	CTNAG	4 cut(s)	210, 234, 483, 632
DpnI	GATC	5 cut(s)	24, 480, 498, 528, 584
DpnII	GATC	5 cut(s)	22, 478, 496, 526, 582
Eam1104I	CTCTTC	4 cut(s)	219, 273, 313, 647
EarI	CTCTTC	4 cut(s)	219, 273, 313, 647
Eco31I	GGTCTC	2 cut(s)	315, 506
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	306
Esp3I	CGTCTC	2 cut(s)	467, 536
FaeI	CATG	4 cut(s)	31, 50, 56, 304
FaiI	YATR	8 cut(s)	29, 48, 54, 129, 302, 306, 315, 411
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	4 cut(s)	27, 46, 52, 300
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	15, 378
FokI	GGATG	2 cut(s)	23, 465
Fsp4HI	GCNGC	2 cut(s)	15, 378
GluI	GCNGC	2 cut(s)	15, 378
GsuI	CTGGAG	1 cut(s)	582
Hin1II	CATG	4 cut(s)	31, 50, 56, 304
HinfI	GANTC	2 cut(s)	214, 439
HphI	GGTGA	2 cut(s)	363, 581
Hpy166II	GTNNAC	2 cut(s)	91, 647
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	5 cut(s)	47, 482, 500, 599, 623
Hpy8I	GTNNAC	2 cut(s)	91, 647
HpyAV	CCTTC	3 cut(s)	277, 502, 532
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	3 cut(s)	14, 304, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	4 cut(s)	210, 234, 483, 632
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	4 cut(s)	31, 50, 56, 304
Kzo9I	GATC	5 cut(s)	22, 478, 496, 526, 582
LmnI	GCTCC	3 cut(s)	286, 292, 547
Lsp1109I	GCAGC	2 cut(s)	26, 389
LweI	GCATC	1 cut(s)	407
MaeII	ACGT	1 cut(s)	643
MalI	GATC	5 cut(s)	24, 480, 498, 528, 584
MboI	GATC	5 cut(s)	22, 478, 496, 526, 582
MfeI	CAATTG	3 cut(s)	179, 203, 254
MflI	RGATCY	3 cut(s)	478, 496, 526
MluCI	AATT	4 cut(s)	179, 203, 254, 459
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	51
MunI	CAATTG	3 cut(s)	179, 203, 254
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	5 cut(s)	22, 478, 496, 526, 582
NlaIII	CATG	4 cut(s)	31, 50, 56, 304
NlaIV	GGNNCC	5 cut(s)	133, 480, 498, 528, 549
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	2 cut(s)	56, 304
PagI	TCATGA	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	214, 439
PkrI	GCNGC	2 cut(s)	16, 379
Ppu21I	YACGTR	1 cut(s)	644
PspN4I	GGNNCC	5 cut(s)	133, 480, 498, 528, 549
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	3 cut(s)	478, 496, 526
RsaI	GTAC	2 cut(s)	192, 642
RsaNI	GTAC	2 cut(s)	191, 641
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	15, 378
Sau3AI	GATC	5 cut(s)	22, 478, 496, 526, 582
Sau96I	GGNCC	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	407
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	4 cut(s)	179, 203, 254, 459
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	1 cut(s)	427
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	4 cut(s)	179, 203, 254, 459
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	214, 439
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	2 cut(s)	14, 377
TspDTI	ATGAA	4 cut(s)	35, 237, 374, 434
TspGWI	ACGGA	3 cut(s)	491, 509, 560
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	131
XceI	RCATGY	2 cut(s)	56, 304
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	618
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.