RLG00000027106

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001586
Physical Location & Seq
Reverse (-)
8464782 .. 8468108
3327 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027106

Sequence Viewer

Length: 984 bp
ATGGCTCCAAGAAGAGGTCGAGGTGGACCAACCAAGACTTCTCGTATGGCTGCCGCCGTTGAGGCCATGGCGGACATGGGTTTCGAGCCCAAACTGGTCCGTCAGAAGGTGAACCGGTTACTAAAGAAAGACCTTTATGGAGAAGAGGGCTGGCGTTTTATTGAAGAAGGTTCTTACAGTGTACTACTTGAAGCCCTTCTGGAGGAGCAAACAGATGGTGATGAAAATGGGAATCCTTCTCTGGAAAAATCAAAAGGTGGAAAAGATGCTGAAACTGCAGGAGCTGGACCCTCCTTGAGCAAGAATGCTTCTCTGAAAAAATCAACCTGTGGAAATGACGCTGAAACTTCAGAAGCTGGACTATTAACCAAGGATGTATCTCTACAAACTGATGCAAGAGGTGTAAATGATACTGAAACTTCAGGAGCTGGACTATCCATAATCAAGGATACGTCTCCACAAACTGATGCAAGAGGTGTAAATGATGCTGAATCATCAGGAGATGGACCTTCCTCAAGCAAGGTTGCTTCTGTAGAAAATGATCCAAGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGTACCCTCCTCCTTAATCAAGGTTTTTCTTCCATGCTCAAACCTTGAGACTGTGAGCAGAACATTACAGAGCAAGGATGATCTGGATTCCTCATCACATAACGAACTTTTGACCACTGCATCGCCCACTCAATTGCGTGATGCTGATAACTTTCTCCTACCTACTGAAGGAGAAATACAAGGCCAGCAAGGTACTCCTGTTACCCACTCTGTACAAGAAGTTGATACTCTTCCAGCCAGGAGGCGTAGACCATACCATGGTTGGGTTGGTTGTGATGATGATGATTTTGTGGAACAAACTGAGGCTCCTTTGCCAGAAGTGTTGCGGAAAATGTTCATTCTGACTGTTGATTCTGGTAAGAGAAAGCGCAAGAGAAGGTGGGATGTGAAGCCTGAGAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

328

Amino Acids

35.21

Weight (kDa)

4.92

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 12 - 70 6.5e-17 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 551, 836
AccI GTMKAC 1 cut(s) 826
AciI CCGC 3 cut(s) 54, 71, 904
AclWI GGATC 1 cut(s) 536
AcuI CTGAAG 3 cut(s) 333, 405, 765
AfaI GTAC 4 cut(s) 183, 582, 772, 792
AfiI CCNNNNNNNGG 7 cut(s) 14, 106, 202, 551, 746, 836, 841
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 3 cut(s) 164, 191, 566
AjnI CCWGG 1 cut(s) 815
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 3 cut(s) 284, 356, 428
AluI AGCT 3 cut(s) 284, 356, 428
Alw26I GTCTC 2 cut(s) 459, 620
AlwI GGATC 1 cut(s) 536
AlwNI CAGNNNCTG 4 cut(s) 284, 356, 428, 578
AoxI GGCC 2 cut(s) 63, 760
ApeKI GCWGC 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsiGI ACCGGT 1 cut(s) 114
Asp700I GAANNNNTTC 2 cut(s) 195, 911
AspLEI GCGC 1 cut(s) 948
AspS9I GGNCC 5 cut(s) 26, 97, 287, 506, 575
AsuHPI GGTGA 2 cut(s) 121, 230
AvaII GGWCC 5 cut(s) 26, 97, 287, 506, 575
BaeI ACNNNNGTAYC 2 cut(s) 762, 795
BanII GRGCYC 1 cut(s) 90
BarI GAAGNNNNNNTAC 2 cut(s) 738, 770
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 209, 497
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 817
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 459, 620
BfmI CTRYAG 2 cut(s) 276, 531
BfuI GTATCC 1 cut(s) 442
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 817
Bme18I GGWCC 5 cut(s) 26, 97, 287, 506, 575
BmgT120I GGNCC 5 cut(s) 26, 97, 287, 506, 575
BmiI GGNNCC 3 cut(s) 6, 289, 885
BmrFI CCNGG 1 cut(s) 817
BmsI GCATC 6 cut(s) 256, 382, 457, 475, 707, 709
BpmI CTGGAG 1 cut(s) 221
BpuEI CTTGAG 3 cut(s) 316, 499, 644
BsaJI CCNNGG 3 cut(s) 66, 369, 835
BsaWI WCCGGW 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 7 cut(s) 14, 106, 202, 551, 746, 836, 841
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 817
BseDI CCNNGG 3 cut(s) 66, 369, 835
BseGI GGATG 3 cut(s) 379, 661, 967
BseLI CCNNNNNNNGG 7 cut(s) 14, 106, 202, 551, 746, 836, 841
BseMII CTCAG 2 cut(s) 870, 963
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 2 cut(s) 218, 577
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 65, 762
BshTI ACCGGT 1 cut(s) 114
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 7 cut(s) 14, 106, 202, 551, 746, 836, 841
BsmAI GTCTC 2 cut(s) 459, 620
BsmBI CGTCTC 1 cut(s) 459
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 65, 762
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 2 cut(s) 541, 658
Bsp19I CCATGG 2 cut(s) 66, 835
BspACI CCGC 3 cut(s) 54, 71, 904
BspANI GGCC 2 cut(s) 65, 762
BspCNI CTCAG 2 cut(s) 871, 964
BspLI GGNNCC 3 cut(s) 6, 289, 885
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 114
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 66, 369, 835
BssMI GATC 2 cut(s) 541, 658
BssT1I CCWWGG 3 cut(s) 66, 369, 835
Bst2UI CCWGG 1 cut(s) 817
Bst4CI ACNGT 3 cut(s) 179, 631, 925
Bst6I CTCTTC 3 cut(s) 7, 138, 813
BstAUI TGTACA 1 cut(s) 790
BstC8I GCNNGC 2 cut(s) 152, 764
BstDEI CTNAG 2 cut(s) 879, 972
BstDSI CCRYGG 2 cut(s) 66, 835
BstENI CCTNNNNNAGG 2 cut(s) 200, 744
BstF5I GGATG 3 cut(s) 379, 661, 967
BstHHI GCGC 1 cut(s) 948
BstKTI GATC 2 cut(s) 544, 661
BstMAI GTCTC 2 cut(s) 459, 620
BstMBI GATC 2 cut(s) 541, 658
BstMWI GCNNNNNNNGC 2 cut(s) 62, 275
BstNI CCWGG 1 cut(s) 817
BstSCI CCNGG 1 cut(s) 815
BstSFI CTRYAG 2 cut(s) 276, 531
BstV1I GCAGC 1 cut(s) 37
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 2 cut(s) 65, 762
BtgI CCRYGG 2 cut(s) 66, 835
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 3 cut(s) 379, 661, 967
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 2 cut(s) 184, 693
Cac8I GCNNGC 2 cut(s) 152, 764
CaiI CAGNNNCTG 4 cut(s) 284, 356, 428, 578
CfoI GCGC 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 5 cut(s) 26, 97, 287, 506, 575
CseI GACGC 1 cut(s) 347
Csp6I GTAC 4 cut(s) 182, 581, 771, 791
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 4 cut(s) 67, 76, 612, 836
CviQI GTAC 4 cut(s) 182, 581, 771, 791
DdeI CTNAG 2 cut(s) 879, 972
DpnI GATC 2 cut(s) 543, 660
DpnII GATC 2 cut(s) 541, 658
Eam1104I CTCTTC 3 cut(s) 7, 138, 813
EarI CTCTTC 3 cut(s) 7, 138, 813
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 66, 369, 835
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 5 cut(s) 26, 97, 287, 506, 575
Eco57I CTGAAG 3 cut(s) 333, 405, 765
EcoNI CCTNNNNNAGG 2 cut(s) 200, 744
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 815
EcoT14I CCWWGG 3 cut(s) 66, 369, 835
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 66, 369, 835
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 4 cut(s) 70, 79, 615, 839
FatI CATG 4 cut(s) 66, 75, 611, 835
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 3 cut(s) 386, 668, 974
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 51, 54
GlaI GCGC 1 cut(s) 947
GluI GCNGC 2 cut(s) 51, 54
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 65, 762
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 948
Hin1II CATG 4 cut(s) 70, 79, 615, 839
Hin6I GCGC 1 cut(s) 946
HinP1I GCGC 1 cut(s) 946
HinfI GANTC 4 cut(s) 232, 491, 665, 929
HpaII CCGG 1 cut(s) 115
HphI GGTGA 2 cut(s) 121, 230
Hpy166II GTNNAC 4 cut(s) 26, 112, 182, 827
Hpy188I TCNGA 4 cut(s) 105, 315, 352, 921
Hpy188III TCNNGA 6 cut(s) 200, 242, 423, 498, 573, 662
Hpy8I GTNNAC 4 cut(s) 26, 112, 182, 827
HpyAV CCTTC 7 cut(s) 100, 161, 206, 246, 519, 740, 948
HpyCH4III ACNGT 3 cut(s) 179, 631, 925
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 4 cut(s) 278, 395, 470, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 275
HpyF3I CTNAG 2 cut(s) 879, 972
HpySE526I ACGT 1 cut(s) 452
Hsp92II CATG 4 cut(s) 70, 79, 615, 839
HspAI GCGC 1 cut(s) 946
Kzo9I GATC 2 cut(s) 541, 658
LmnI GCTCC 5 cut(s) 10, 205, 281, 425, 889
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 6 cut(s) 256, 382, 457, 475, 707, 709
MaeII ACGT 1 cut(s) 452
MaeIII GTNAC 2 cut(s) 117, 778
MalI GATC 2 cut(s) 543, 660
MboI GATC 2 cut(s) 541, 658
MboII GAAGA 5 cut(s) 24, 155, 176, 599, 800
MfeI CAATTG 1 cut(s) 710
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 1 cut(s) 710
MroXI GAANNNNTTC 2 cut(s) 195, 911
MseI TTAA 2 cut(s) 365, 593
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 817
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 817
MwoI GCNNNNNNNGC 2 cut(s) 62, 275
NcoI CCATGG 2 cut(s) 66, 835
NdeII GATC 2 cut(s) 541, 658
NlaIII CATG 4 cut(s) 70, 79, 615, 839
NlaIV GGNNCC 3 cut(s) 6, 289, 885
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 2 cut(s) 195, 911
PfeI GAWTC 4 cut(s) 232, 491, 665, 929
PflMI CCANNNNNTGG 2 cut(s) 551, 836
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 2 cut(s) 52, 55
PpuMI RGGWCCY 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 815
PspGI CCWGG 1 cut(s) 815
PspN4I GGNNCC 3 cut(s) 6, 289, 885
PspPI GGNCC 5 cut(s) 26, 97, 287, 506, 575
PspPPI RGGWCCY 1 cut(s) 575
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 4 cut(s) 284, 356, 428, 578
RsaI GTAC 4 cut(s) 183, 582, 772, 792
RsaNI GTAC 4 cut(s) 182, 581, 771, 791
SaqAI TTAA 2 cut(s) 365, 593
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 541, 658
Sau96I GGNCC 5 cut(s) 26, 97, 287, 506, 575
ScrFI CCNGG 1 cut(s) 817
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 6 cut(s) 256, 382, 457, 475, 707, 709
SfcI CTRYAG 2 cut(s) 276, 531
SinI GGWCC 5 cut(s) 26, 97, 287, 506, 575
SmlI CTYRAG 3 cut(s) 295, 514, 623
SmoI CTYRAG 3 cut(s) 295, 514, 623
Sse9I AATT 1 cut(s) 710
SsiI CCGC 3 cut(s) 54, 71, 904
StyD4I CCNGG 1 cut(s) 815
StyI CCWWGG 3 cut(s) 66, 369, 835
TaaI ACNGT 3 cut(s) 179, 631, 925
TaiI ACGT 1 cut(s) 455
TaqI TCGA 2 cut(s) 19, 84
TasI AATT 1 cut(s) 710
TatI WGTACW 2 cut(s) 181, 790
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 232, 491, 665, 929
Tru1I TTAA 2 cut(s) 365, 593
Tru9I TTAA 2 cut(s) 365, 593
TscAI CASTG 2 cut(s) 184, 700
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 237, 904
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 184, 700
Van91I CCANNNNNTGG 2 cut(s) 551, 836
VpaK11BI GGWCC 5 cut(s) 26, 97, 287, 506, 575
XagI CCTNNNNNAGG 2 cut(s) 200, 744
XcmI CCANNNNNNNNNTGG 3 cut(s) 73, 837, 842
XmiI GTMKAC 1 cut(s) 826
XmnI GAANNNNTTC 2 cut(s) 195, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.