Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001586

Physical Location & Seq

Genomic Coordinates Reverse (-)

37929809 .. 37931926

Gene Structure 2118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTCCAAGAGGTCGGCCCAGAAAGAGGGGTAATCCTCATTTGGATGCAGCTCTTAAGGCTATGGCTGCCCTTACTTTTCCAGAGAAACTAGTCCGCGATACAGTGGATGAGTTACTTGAAATTGCTTCTCCACAAGATCATGCAAGAAGTGAACATGATACTGAAGCTTCAGCTGTTCTGCCTTCCTCAAGCAGGTTTAGTTCACCTACCTGCACACCAATGGAGGTTTTGCAACCACAGACTAATCAACCTCTGAACTCTGCACCACTGACTCAAATGCCAGATTCTAAGGATTGTCTTCCATCCAAGAGGCGTAGACCATATCACGGTTGGATAGGCAATGATGATGAGGATCTTGTTCTTGTGGAACTCACTCCAGCTCCATTGCCACAAGGGCTGAAACTTCTTTATTGTGTAATGGGAAGTGAATCTGCAAGACAAGGTGGAAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WIYLD

Protein Analysis

152

Amino Acids

16.67

Weight (kDa)

6.07

Isoelectric Point (pI)

69.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT1G45248 AT2G40020 AT2G40020 AT2G40020 AT2G40020
fragaria_vesca	FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_2g13151 FvH4_7g23100 FvH4_7g24210 FvH4_7g24210
malus_domestica	MD01G1149600.v1.1 MD17G1067400.v1.1
prunus_persica	Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1 Prupe.2G247900_v2.0.a1
pyrus_communis	pycom01g16760 pycom07g19830 pycom17g06770
rosa_chinensis	RchiOBHm_Chr1g0369781 RchiOBHm_Chr6g0274431
rosa_laevigata	RLG00000013543 RLG00000027106
rosa_multiflora	Rmu_sc0001154.1_g000041 Rmu_sc0001289.1_g000015 Rmu_sc0007743.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287390 Rroxscaffold_7G00194230
rosa_rugosa	Rorug01G0352100 Rorug01G0352200 Rorug01G0352300 Rorug06G0081800
rosa_samantha	Rh1AG360800 Rh1BG324500 Rh1CG337700 Rh1DG354900 Rh6AG198200 Rh6BG201500 Rh6CG202200 Rh6DG192700
rosa_wichuraiana	Rw1G031760 Rw6G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	186, 221
AccI	GTMKAC	1 cut(s)	319
AccII	CGCG	1 cut(s)	99
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	156, 186
AfiI	CCNNNNNNNGG	3 cut(s)	27, 195, 329
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	91
AluBI	AGCT	4 cut(s)	53, 170, 176, 383
AluI	AGCT	4 cut(s)	53, 170, 176, 383
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	50, 68
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	55, 62
BccI	CCATC	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	56
BfuAI	ACCTGC	2 cut(s)	186, 221
BglI	GCCNNNNNGGC	1 cut(s)	397
BisI	GCNGC	2 cut(s)	51, 69
BlsI	GCNGC	2 cut(s)	52, 70
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 195, 329
Bse3DI	GCAATG	2 cut(s)	349, 386
Bse8I	GATNNNNATC	1 cut(s)	354
BseGI	GGATG	3 cut(s)	52, 115, 305
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	27, 195, 329
BseMI	GCAATG	2 cut(s)	349, 386
BseXI	GCAGC	2 cut(s)	55, 62
BsgI	GTGCAG	2 cut(s)	199, 249
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	27, 195, 329
BsnI	GGCC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	139, 355
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	186, 221
BspPI	GGATC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	349, 386
BssMI	GATC	2 cut(s)	139, 355
Bst4CI	ACNGT	2 cut(s)	106, 332
BstAFI	CTTAAG	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	52, 115, 305
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	142, 358
BstMBI	GATC	2 cut(s)	139, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 68, 397
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	55, 62
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	52, 115, 305
BtsIMutI	CAGTG	2 cut(s)	111, 269
BveI	ACCTGC	2 cut(s)	186, 221
Cfr13I	GGNCC	1 cut(s)	18
CviAII	CATG	2 cut(s)	143, 158
CviJI	RGCY	9 cut(s)	5, 19, 53, 62, 68, 170, 176, 383, 400
CviKI_1	RGCY	9 cut(s)	5, 19, 53, 62, 68, 170, 176, 383, 400
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	2 cut(s)	141, 357
DpnII	GATC	2 cut(s)	139, 355
Eco57I	CTGAAG	2 cut(s)	156, 186
EcoNI	CCTNNNNNAGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	146, 161
FaiI	YATR	5 cut(s)	65, 144, 159, 325, 455
FatI	CATG	2 cut(s)	142, 157
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	51, 69
FokI	GGATG	3 cut(s)	59, 122, 292
Fsp4HI	GCNGC	2 cut(s)	51, 69
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	51, 69
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	146, 161
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	3 cut(s)	274, 287, 431
HphI	GGTGA	1 cut(s)	198
Hpy166II	GTNNAC	3 cut(s)	155, 206, 320
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	3 cut(s)	155, 206, 320
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	2 cut(s)	106, 332
HpyCH4V	TGCA	6 cut(s)	50, 146, 216, 235, 266, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 68, 397
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	146, 161
Kzo9I	GATC	2 cut(s)	139, 355
LmnI	GCTCC	2 cut(s)	10, 388
LpnPI	CCDG	6 cut(s)	34, 96, 181, 226, 297, 393
Lsp1109I	GCAGC	2 cut(s)	55, 62
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	2 cut(s)	141, 357
MboI	GATC	2 cut(s)	139, 355
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	8 cut(s)	5, 21, 48, 199, 220, 264, 306, 346
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	2 cut(s)	45, 221
MspA1I	CMGCKG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	59, 68, 397
NdeII	GATC	2 cut(s)	139, 355
NlaIII	CATG	2 cut(s)	146, 161
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	287, 431
PkrI	GCNGC	2 cut(s)	52, 70
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	176
RseI	CAYNNNNRTG	2 cut(s)	45, 221
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	51, 69
Sau3AI	GATC	2 cut(s)	139, 355
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	45, 221
SmlI	CTYRAG	2 cut(s)	56, 190
SmoI	CTYRAG	2 cut(s)	56, 190
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	106, 332
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	287, 431
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	111, 276
TseI	GCWGC	2 cut(s)	50, 68
TspRI	CASTG	2 cut(s)	111, 276
Vha464I	CTTAAG	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	319
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.