Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007807

Physical Location & Seq

Genomic Coordinates Reverse (-)

25785577 .. 25786743

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTCAATCCCAATTGGGGATGGGGAGGGACAAGACCGCTTGATTTGGCCCTGGAATAAGAATGGAACCTATAGTGTTAGTTCAGGCTACCATTGGATTCACAGAAACCTATCTTACTCCCTCAATCATGGTATTGGCCCTTCTCACATGATCAATTCGCTCGTTTGGAAGTCGGTTTGGAAGTTGAACACTCTTCCTAAAGTTAAACTTTTCCTCTGGAGAGTTTTAAATGGGGCATCTCCTACTATGCAGGCCTTATACAAAAGAAGGGTAGTAAGCAATCCATTATGTCCTATCTGTGGGACTGAGGCAGAAAGTTTTGAACATCTATTGTTATTATGTACATGGGTTGAAAAGGTATGGTTTGGCTCTCCGCTAGGCATCAAGGTAGACAAACAGAAAATTACTACCTTTGATAGGTGGCTACTTCAATTCATCAACATTACTTCCAACAAGAGTGAAAAAAGAAGGGTACTCACCTTGATCAGTTTCATCGCTTGGAACATTTGGAAGGCTAGATGTGCCTTTGTCTACCAACATAAACCTGTGTCACCAAGTTGTACAATATGGGCTGTTGTCTACCTCGCATCGGATTTTATTGATGCCACTACTAATCTTCCAGCTGCAGCAAGTACCAGTACTGATTTGGTCACTCCGGTTAAGTGGTTAGCCCCTCCAATCGATTTTGTTAAGGTCAACTACGATGCCGCATGGAAACCCCCCTCTTCAGCTGGTCTTGGAGTGGTGATCCGAAGCCATATGGGGTTGGTTTTGGGTGGCTCCGCTATGTCGGCTGTGTGCGGCACTGTGGCCACTGCGGAAGCTGAATCAATTCTCTCTGGTGTCAAACTTGCCTTATCAATGTATCTGAAAAAAGTAAAGATTGAATCAGACTCCAAAGAAGTTATCTCAGATTTGAATTCTTCTAGTTCTTGCAAAAACTGGAGAATTTACCCGATTATAGTGCAAATTAGAAGGCGTTGTATGGGTTTTGATGATTATAGTTGGGACTGGGTTCCCCGTGAAGCGAACCAAGCCGCTCATTCAGCAGCTTCGCTTGCCATCCGGTCGGTGGGTCCTCTGCGATGGGCTGATCAGCCACCACCTTCCCTCTCTCTTGTTCTGCGCAATGACGGCCTCCCCTGTCCTCACGCAGTGGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Alpha-L-AF_C

Protein Analysis

388

Amino Acids

43.23

Weight (kDa)

9.33

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	53 - 121	4.4e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	233 - 353	1.8e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10740 AT3G10740 AT3G10740 AT3G10740
fragaria_vesca	FvH4_1g29140 FvH4_1g29140
malus_domestica	MD12G1112100.v1.1 MD14G1101200.v1.1
prunus_persica	Prupe.7G021200_v2.0.a1 Prupe.7G021200_v2.0.a1 Prupe.7G021200_v2.0.a1
pyrus_communis	pycom12g09150 pycom14g08790
rosa_chinensis	RchiOBHm_Chr3g0494401
rosa_laevigata	RLG00000022674
rosa_multiflora	Rmu_sc0001481.1_g000002
rosa_roxburghii	Rroxscaffold_6G00391120
rosa_rugosa	Rorug03G0265100 Rorug03G0265200
rosa_samantha	Rh3AG315400 Rh3BG350600 Rh3CG347300 Rh3DG349900
rosa_wichuraiana	Rw3G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1127
AccBSI	CCGCTC	1 cut(s)	1040
AccI	GTMKAC	3 cut(s)	390, 531, 579
AciI	CCGC	7 cut(s)	37, 374, 708, 783, 801, 818, 1038
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	2 cut(s)	919, 948
AcuI	CTGAAG	1 cut(s)	711
AdeI	CACNNNGTG	1 cut(s)	1156
AfaI	GTAC	5 cut(s)	343, 474, 562, 634, 640
AfiI	CCNNNNNNNGG	5 cut(s)	16, 299, 417, 589, 1072
AgsI	TTSAA	6 cut(s)	187, 323, 353, 431, 887, 919
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	5 cut(s)	623, 731, 824, 1052, 1162
AluI	AGCT	5 cut(s)	623, 731, 824, 1052, 1162
AlwI	GGATC	1 cut(s)	742
AoxI	GGCC	5 cut(s)	47, 136, 252, 810, 1135
ApeKI	GCWGC	3 cut(s)	623, 626, 1049
ApoI	RAATTY	2 cut(s)	919, 948
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	1128
AspS9I	GGNCC	3 cut(s)	48, 137, 1076
AsuHPI	GGTGA	3 cut(s)	469, 543, 757
AvaII	GGWCC	1 cut(s)	1076
BalI	TGGCCA	1 cut(s)	812
BarI	GAAGNNNNNNTAC	2 cut(s)	124, 156
BbvI	GCAGC	3 cut(s)	610, 638, 1061
BccI	CCATC	3 cut(s)	14, 1070, 1080
BceAI	ACGGC	1 cut(s)	1150
BcgI	CGANNNNNNTGC	2 cut(s)	946, 980
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	3 cut(s)	150, 483, 1093
BfaI	CTAG	3 cut(s)	377, 516, 927
BfmI	CTRYAG	2 cut(s)	70, 624
BisI	GCNGC	6 cut(s)	624, 627, 708, 802, 1038, 1050
BlsI	GCNGC	6 cut(s)	625, 628, 709, 803, 1039, 1051
BmcAI	AGTACT	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	1076
BmgT120I	GGNCC	3 cut(s)	48, 137, 1076
BmiI	GGNNCC	4 cut(s)	67, 781, 1017, 1077
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	1021
BmsI	GCATC	5 cut(s)	245, 390, 592, 596, 694
BmuI	ACTGGG	1 cut(s)	1021
BpmI	CTGGAG	2 cut(s)	238, 964
Bsa29I	ATCGAT	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	50
BsaWI	WCCGGW	2 cut(s)	655, 1065
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 299, 417, 589, 1072
Bse1I	ACTGG	3 cut(s)	636, 947, 1016
Bse3DI	GCAATG	1 cut(s)	1135
BseBI	CCWGG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	25, 1062
BseLI	CCNNNNNNNGG	5 cut(s)	16, 299, 417, 589, 1072
BseMI	GCAATG	1 cut(s)	1135
BseMII	CTCAG	2 cut(s)	297, 924
BseNI	ACTGG	3 cut(s)	636, 947, 1016
BseXI	GCAGC	3 cut(s)	610, 638, 1061
Bsh1285I	CGRYCG	1 cut(s)	1070
BshFI	GGCC	5 cut(s)	49, 138, 254, 812, 1137
BshVI	ATCGAT	1 cut(s)	681
BsiEI	CGRYCG	1 cut(s)	1070
BsiSI	CCGG	2 cut(s)	656, 1066
BslFI	GGGAC	3 cut(s)	42, 316, 1022
BslI	CCNNNNNNNGG	5 cut(s)	16, 299, 417, 589, 1072
BsmFI	GGGAC	3 cut(s)	42, 316, 1022
BsnI	GGCC	5 cut(s)	49, 138, 254, 812, 1137
Bsp1407I	TGTACA	2 cut(s)	341, 560
Bsp143I	GATC	4 cut(s)	150, 483, 747, 1093
BspACI	CCGC	7 cut(s)	37, 374, 708, 783, 801, 818, 1038
BspANI	GGCC	5 cut(s)	49, 138, 254, 812, 1137
BspCNI	CTCAG	2 cut(s)	298, 923
BspDI	ATCGAT	1 cut(s)	681
BspLI	GGNNCC	4 cut(s)	67, 781, 1017, 1077
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	1 cut(s)	742
BsrBI	CCGCTC	1 cut(s)	1040
BsrDI	GCAATG	1 cut(s)	1135
BsrGI	TGTACA	2 cut(s)	341, 560
BsrI	ACTGG	3 cut(s)	636, 947, 1016
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	4 cut(s)	150, 483, 747, 1093
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	2 cut(s)	198, 730
BstAUI	TGTACA	2 cut(s)	341, 560
BstC8I	GCNNGC	2 cut(s)	252, 1059
BstDEI	CTNAG	2 cut(s)	306, 910
BstENI	CCTNNNNNAGG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	25, 1062
BstHHI	GCGC	1 cut(s)	1128
BstKTI	GATC	4 cut(s)	153, 486, 750, 1096
BstMBI	GATC	4 cut(s)	150, 483, 747, 1093
BstMCI	CGRYCG	1 cut(s)	1070
BstMWI	GCNNNNNNNGC	6 cut(s)	521, 791, 1034, 1046, 1058, 1134
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	70, 624
BstV1I	GCAGC	3 cut(s)	610, 638, 1061
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	5 cut(s)	49, 138, 254, 812, 1137
BsuTUI	ATCGAT	1 cut(s)	681
BtgZI	GCGATG	2 cut(s)	478, 1099
BtsCI	GGATG	2 cut(s)	25, 1062
BtsI	GCAGTG	2 cut(s)	813, 1161
BtsIMutI	CAGTG	3 cut(s)	804, 813, 1161
Cac8I	GCNNGC	2 cut(s)	252, 1059
CfoI	GCGC	1 cut(s)	1128
Cfr13I	GGNCC	3 cut(s)	48, 137, 1076
ClaI	ATCGAT	1 cut(s)	681
Csp6I	GTAC	5 cut(s)	342, 473, 561, 633, 639
CviAII	CATG	4 cut(s)	128, 148, 345, 711
CviQI	GTAC	5 cut(s)	342, 473, 561, 633, 639
DdeI	CTNAG	2 cut(s)	306, 910
DpnI	GATC	4 cut(s)	152, 485, 749, 1095
DpnII	GATC	4 cut(s)	150, 483, 747, 1093
DraI	TTTAAA	1 cut(s)	228
DraIII	CACNNNGTG	1 cut(s)	1156
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	2 cut(s)	198, 730
EarI	CTCTTC	2 cut(s)	198, 730
Eco147I	AGGCCT	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	1076
Eco57I	CTGAAG	1 cut(s)	711
EcoNI	CCTNNNNNAGG	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	1076
EcoRI	GAATTC	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	50
FaeI	CATG	4 cut(s)	131, 151, 348, 714
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	3 cut(s)	42, 316, 1022
FatI	CATG	4 cut(s)	127, 147, 344, 710
FauNDI	CATATG	1 cut(s)	759
FbaI	TGATCA	3 cut(s)	150, 483, 1093
FblI	GTMKAC	3 cut(s)	390, 531, 579
Fnu4HI	GCNGC	6 cut(s)	624, 627, 708, 802, 1038, 1050
FokI	GGATG	2 cut(s)	32, 1049
Fsp4HI	GCNGC	6 cut(s)	624, 627, 708, 802, 1038, 1050
FspBI	CTAG	3 cut(s)	377, 516, 927
FspI	TGCGCA	1 cut(s)	1127
GlaI	GCGC	1 cut(s)	1127
GluI	GCNGC	6 cut(s)	624, 627, 708, 802, 1038, 1050
GsuI	CTGGAG	2 cut(s)	238, 964
HaeIII	GGCC	5 cut(s)	49, 138, 254, 812, 1137
HapII	CCGG	2 cut(s)	656, 1066
HhaI	GCGC	1 cut(s)	1128
Hin1II	CATG	4 cut(s)	131, 151, 348, 714
Hin6I	GCGC	1 cut(s)	1126
HinP1I	GCGC	1 cut(s)	1126
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	4 cut(s)	97, 827, 887, 893
HpaII	CCGG	2 cut(s)	656, 1066
HphI	GGTGA	3 cut(s)	469, 543, 757
Hpy166II	GTNNAC	4 cut(s)	391, 532, 580, 697
Hpy188I	TCNGA	5 cut(s)	592, 752, 870, 892, 913
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	4 cut(s)	391, 532, 580, 697
HpyAV	CCTTC	6 cut(s)	150, 261, 462, 505, 969, 1116
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4V	TGCA	4 cut(s)	250, 626, 936, 967
HpyF10VI	GCNNNNNNNGC	6 cut(s)	521, 791, 1034, 1046, 1058, 1134
HpyF3I	CTNAG	2 cut(s)	306, 910
Hsp92II	CATG	4 cut(s)	131, 151, 348, 714
HspAI	GCGC	1 cut(s)	1126
Ksp22I	TGATCA	3 cut(s)	150, 483, 1093
Kzo9I	GATC	4 cut(s)	150, 483, 747, 1093
LmnI	GCTCC	2 cut(s)	785, 1159
Lsp1109I	GCAGC	3 cut(s)	610, 638, 1061
LweI	GCATC	5 cut(s)	245, 390, 592, 596, 694
MaeI	CTAG	3 cut(s)	377, 516, 927
MaeIII	GTNAC	2 cut(s)	549, 649
MalI	GATC	4 cut(s)	152, 485, 749, 1095
MbiI	CCGCTC	1 cut(s)	1040
MboI	GATC	4 cut(s)	150, 483, 747, 1093
MboII	GAAGA	4 cut(s)	185, 608, 717, 915
MfeI	CAATTG	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	8 cut(s)	12, 154, 402, 431, 831, 919, 948, 969
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	474
Mox20I	TGGCCA	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	4 cut(s)	204, 227, 660, 690
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	2 cut(s)	623, 731
MspI	CCGG	2 cut(s)	656, 1066
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	6 cut(s)	521, 791, 1034, 1046, 1058, 1134
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	4 cut(s)	150, 483, 747, 1093
NlaIII	CATG	4 cut(s)	131, 151, 348, 714
NlaIV	GGNNCC	4 cut(s)	67, 781, 1017, 1077
NmuCI	GTSAC	2 cut(s)	549, 649
NsbI	TGCGCA	1 cut(s)	1127
PceI	AGGCCT	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	97, 827, 887
PkrI	GCNGC	6 cut(s)	625, 628, 709, 803, 1039, 1051
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PpuMI	RGGWCCY	1 cut(s)	1076
Psp5II	RGGWCCY	1 cut(s)	1076
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	4 cut(s)	67, 781, 1017, 1077
PspPI	GGNCC	3 cut(s)	48, 137, 1076
PspPPI	RGGWCCY	1 cut(s)	1076
PstI	CTGCAG	1 cut(s)	628
PvuII	CAGCTG	2 cut(s)	623, 731
RsaI	GTAC	5 cut(s)	343, 474, 562, 634, 640
RsaNI	GTAC	5 cut(s)	342, 473, 561, 633, 639
SaqAI	TTAA	4 cut(s)	204, 227, 660, 690
SatI	GCNGC	6 cut(s)	624, 627, 708, 802, 1038, 1050
Sau3AI	GATC	4 cut(s)	150, 483, 747, 1093
Sau96I	GGNCC	3 cut(s)	48, 137, 1076
ScaI	AGTACT	1 cut(s)	640
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	52
SfaNI	GCATC	5 cut(s)	245, 390, 592, 596, 694
SfcI	CTRYAG	2 cut(s)	70, 624
SinI	GGWCC	1 cut(s)	1076
Sse9I	AATT	8 cut(s)	12, 154, 402, 431, 831, 919, 948, 969
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	7 cut(s)	37, 374, 708, 783, 801, 818, 1038
SspMI	CTAG	3 cut(s)	377, 516, 927
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	808
TaqI	TCGA	1 cut(s)	681
TasI	AATT	8 cut(s)	12, 154, 402, 431, 831, 919, 948, 969
TatI	WGTACW	3 cut(s)	341, 560, 638
TauI	GCSGC	3 cut(s)	710, 804, 1040
TfiI	GAWTC	3 cut(s)	97, 827, 887
Tru1I	TTAA	4 cut(s)	204, 227, 660, 690
Tru9I	TTAA	4 cut(s)	204, 227, 660, 690
TscAI	CASTG	3 cut(s)	811, 820, 1161
TseFI	GTSAC	2 cut(s)	549, 649
TseI	GCWGC	3 cut(s)	623, 626, 1049
Tsp45I	GTSAC	2 cut(s)	549, 649
TspDTI	ATGAA	2 cut(s)	424, 481
TspRI	CASTG	3 cut(s)	811, 820, 1161
VpaK11BI	GGWCC	1 cut(s)	1076
XagI	CCTNNNNNAGG	1 cut(s)	415
XapI	RAATTY	2 cut(s)	919, 948
XcmI	CCANNNNNNNNNTGG	2 cut(s)	643, 1069
XmiI	GTMKAC	3 cut(s)	390, 531, 579
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	3 cut(s)	377, 516, 927
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.